Wall clock time and date at job start Tue Mar 31 2020 14:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86795 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99778 * 3 2 1 5 5 H 1.48507 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47043 * 120.00028 * 3 2 1 7 7 C 1.40220 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00051 * 177.77019 * 7 2 1 9 9 C 1.41106 * 120.00146 * 357.77824 * 7 2 1 10 10 C 1.40894 * 120.10307 * 214.02308 * 9 7 2 11 11 C 1.36314 * 119.89422 * 179.97438 * 10 9 7 12 12 C 1.40024 * 120.10561 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.89411 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00083 * 14.70985 * 13 12 11 15 15 N 1.34777 * 120.00154 * 194.70140 * 13 12 11 16 16 C 1.47419 * 125.65005 * 173.90261 * 15 13 12 17 17 C 1.54918 * 104.82956 * 155.90925 * 16 15 13 18 18 C 1.55153 * 101.61876 * 36.99271 * 17 16 15 19 19 C 1.47020 * 125.64483 * 353.94571 * 15 13 12 20 20 H 1.08996 * 109.88667 * 300.59468 * 19 15 13 21 21 C 1.50698 * 109.88430 * 61.60722 * 19 15 13 22 22 N 1.31794 * 119.12121 * 38.72408 * 21 19 15 23 23 C 1.32344 * 120.81922 * 179.76549 * 22 21 19 24 24 C 1.38599 * 119.09896 * 0.49903 * 23 22 21 25 25 C 1.38598 * 118.40205 * 359.75595 * 24 23 22 26 26 N 1.31797 * 119.12680 * 218.99710 * 21 19 15 27 27 C 1.40012 * 120.20425 * 0.25512 * 12 11 10 28 28 C 1.36316 * 120.11213 * 359.48562 * 27 12 11 29 29 H 0.97008 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.05350 * 359.95016 * 10 9 7 31 31 H 1.07997 * 119.95247 * 179.97438 * 11 10 9 32 32 H 1.08997 * 110.36823 * 37.07541 * 16 15 13 33 33 H 1.08999 * 110.46520 * 274.79367 * 16 15 13 34 34 H 1.09000 * 111.00162 * 155.08575 * 17 16 15 35 35 H 1.09001 * 111.00406 * 278.89463 * 17 16 15 36 36 H 1.08991 * 110.71882 * 82.87572 * 18 17 16 37 37 H 1.08995 * 110.72137 * 206.15590 * 18 17 16 38 38 H 1.07997 * 120.44807 * 180.23580 * 23 22 21 39 39 H 1.08003 * 120.79547 * 179.77781 * 24 23 22 40 40 H 1.07995 * 120.44455 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.94094 * 179.74448 * 27 12 11 42 42 H 1.07997 * 120.05733 * 180.27595 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6963 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0870 -1.2148 -0.0358 9 6 1.3028 -2.4359 0.0485 10 6 1.8473 -3.5394 0.7346 11 6 1.1626 -4.7173 0.7786 12 6 -0.0803 -4.8314 0.1438 13 6 -0.8176 -6.1095 0.1940 14 8 -0.4928 -6.9678 0.9915 15 7 -1.8508 -6.3247 -0.6442 16 6 -2.5893 -7.5923 -0.7898 17 6 -3.9769 -7.1815 -1.3427 18 6 -3.6006 -6.0191 -2.2991 19 6 -2.4275 -5.3346 -1.5653 20 1 -2.7910 -4.4737 -1.0041 21 6 -1.3863 -4.8940 -2.5617 22 7 -0.5449 -5.7850 -3.0464 23 6 0.3797 -5.4359 -3.9266 24 6 0.4617 -4.1122 -4.3289 25 6 -0.4373 -3.2034 -3.7931 26 7 -1.3380 -3.6269 -2.9211 27 6 -0.6232 -3.7389 -0.5433 28 6 0.0517 -2.5554 -0.5883 29 1 -0.4850 0.8401 -0.0004 30 1 2.8059 -3.4524 1.2246 31 1 1.5793 -5.5639 1.3039 32 1 -2.6965 -8.0823 0.1779 33 1 -2.0804 -8.2511 -1.4935 34 1 -4.4385 -8.0036 -1.8897 35 1 -4.6290 -6.8330 -0.5419 36 1 -3.2778 -6.4046 -3.2661 37 1 -4.4371 -5.3304 -2.4168 38 1 1.0638 -6.1718 -4.3227 39 1 1.2079 -3.7965 -5.0430 40 1 -0.4033 -2.1639 -4.0838 41 1 -1.5802 -3.8329 -1.0349 42 1 -0.3699 -1.7120 -1.1148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898966417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:52 Heat of formation + Delta-G solvation = 65.525337 kcal Electronic energy + Delta-G solvation = -28015.211260 eV Core-core repulsion = 24347.133978 eV Total energy + Delta-G solvation = -3668.077282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.60885 -40.78155 -39.17308 -38.28348 -35.66897 -34.67621 -33.81803 -32.84546 -31.52450 -31.18831 -29.80966 -27.73465 -25.81533 -25.35166 -24.21943 -23.01608 -22.63920 -21.91876 -20.67014 -19.34747 -18.62215 -18.35605 -17.55126 -17.40293 -16.92346 -16.46585 -16.30621 -15.85019 -15.47610 -15.40892 -15.03347 -14.62886 -14.48850 -14.41417 -14.23408 -13.91246 -13.73995 -13.64312 -13.44167 -13.08400 -12.82814 -12.70192 -12.44996 -12.34395 -12.14156 -11.80785 -11.73791 -11.67123 -11.59996 -11.20509 -11.09217 -10.72470 -10.37429 -10.07562 -9.76777 -9.43105 -9.26356 -8.63076 -6.51156 0.01414 0.26227 0.45322 1.13669 1.39274 1.43762 1.51079 1.95994 2.11926 2.18868 2.74306 2.85360 2.97857 3.29341 3.58303 3.65154 3.65584 3.85975 3.95884 4.13304 4.19818 4.26959 4.31628 4.38256 4.47209 4.47647 4.56968 4.80725 4.85667 4.91643 4.94565 4.99468 5.04970 5.07069 5.15390 5.27718 5.30716 5.41728 5.55496 5.62430 5.82134 5.99347 6.02702 6.17943 6.24968 6.49098 6.59194 6.81394 6.90662 7.21614 7.28424 8.27687 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.004874 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.403728 B = 5743.664119 C = 6428.548301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.480 4.480 8 H 0.078 0.922 9 C 0.097 3.903 10 C -0.246 4.246 11 C -0.047 4.047 12 C -0.281 4.281 13 C 0.586 3.414 14 O -0.603 6.603 15 N -0.602 5.602 16 C 0.100 3.900 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.187 3.813 20 H 0.100 0.900 21 C 0.305 3.695 22 N -0.525 5.525 23 C 0.129 3.871 24 C -0.220 4.220 25 C 0.140 3.860 26 N -0.517 5.517 27 C -0.102 4.102 28 C -0.163 4.163 29 H 0.292 0.708 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.189 0.811 39 H 0.177 0.823 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -4.510 -12.009 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.096 0.904 9 C 0.094 3.906 10 C -0.265 4.265 11 C -0.067 4.067 12 C -0.286 4.286 13 C 0.382 3.618 14 O -0.488 6.488 15 N -0.334 5.334 16 C -0.021 4.021 17 C -0.151 4.151 18 C -0.148 4.148 19 C 0.081 3.919 20 H 0.117 0.883 21 C 0.037 3.963 22 N -0.240 5.240 23 C -0.035 4.035 24 C -0.241 4.241 25 C -0.026 4.026 26 N -0.231 5.231 27 C -0.120 4.120 28 C -0.182 4.182 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.206 0.794 39 H 0.195 0.805 40 H 0.198 0.802 41 H 0.179 0.821 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.802 -5.107 -10.899 14.343 hybrid contribution 1.699 1.030 -0.049 1.988 sum -6.102 -4.077 -10.949 13.181 Atomic orbital electron populations 1.69741 1.08805 1.30897 1.34529 1.26835 0.95738 1.04341 0.91128 0.85128 0.78612 0.75200 0.80061 1.17827 1.18901 1.19069 1.19914 0.94998 0.90983 1.45026 0.90356 1.18248 0.92999 0.92260 0.87131 1.20948 1.02428 0.95134 1.08000 1.20469 0.93861 0.96371 0.95951 1.19304 0.99629 0.94928 1.14710 1.18163 0.78356 0.86745 0.78517 1.90600 1.68925 1.48642 1.40607 1.48108 1.32933 1.13994 1.38322 1.22401 0.92819 0.85584 1.01300 1.22801 0.94331 0.98764 0.99177 1.22723 0.95203 0.98321 0.98509 1.20838 0.90651 0.92885 0.87514 0.88318 1.23088 0.93930 0.85468 0.93803 1.68071 1.05598 1.39459 1.10822 1.23656 0.93584 0.96236 0.90051 1.23146 1.02065 0.95163 1.03735 1.23507 0.89066 1.01463 0.88550 1.68268 1.25616 1.16394 1.12812 1.22502 1.01157 0.92510 0.95794 1.21129 0.97173 0.96687 1.03231 0.89691 0.88044 0.88678 0.91304 0.91436 0.86305 0.89315 0.90075 0.86819 0.79435 0.80550 0.80178 0.82126 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.05 10.60 21.87 0.23 -39.82 16 2 C 0.04 1.70 5.41 85.35 0.46 2.16 16 3 Si 0.99 35.89 29.56 68.60 2.03 37.92 16 4 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 6 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.48 -24.89 9.04 23.46 0.21 -24.68 16 8 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 9 C 0.10 5.19 5.55 -21.28 -0.12 5.08 16 10 C -0.25 -12.91 9.73 22.47 0.22 -12.69 16 11 C -0.05 -2.46 9.52 22.25 0.21 -2.25 16 12 C -0.28 -14.07 5.64 -19.93 -0.11 -14.18 16 13 C 0.59 27.59 7.63 86.72 0.66 28.25 16 14 O -0.60 -31.53 16.65 -3.98 -0.07 -31.59 16 15 N -0.60 -22.08 2.79 -796.26 -2.22 -24.30 16 16 C 0.10 2.81 6.94 86.86 0.60 3.41 16 17 C -0.11 -2.02 7.08 31.99 0.23 -1.80 16 18 C -0.11 -2.25 6.47 31.80 0.21 -2.04 16 19 C 0.19 5.89 2.61 44.61 0.12 6.00 16 20 H 0.10 3.33 6.30 -2.39 -0.02 3.31 16 21 C 0.31 10.37 3.76 138.75 0.52 10.89 16 22 N -0.53 -17.69 10.02 -187.84 -1.88 -19.58 16 23 C 0.13 3.59 11.31 84.70 0.96 4.55 16 24 C -0.22 -5.53 10.17 22.44 0.23 -5.30 16 25 C 0.14 4.13 11.01 84.70 0.93 5.06 16 26 N -0.52 -17.59 7.51 -187.85 -1.41 -19.00 16 27 C -0.10 -4.83 6.13 22.25 0.14 -4.69 16 28 C -0.16 -8.31 7.83 22.47 0.18 -8.14 16 29 H 0.29 12.94 8.29 -92.70 -0.77 12.17 16 30 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.10 4.86 7.70 -2.91 -0.02 4.84 16 32 H 0.07 2.03 7.98 -2.39 -0.02 2.01 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.66 7.84 -2.39 -0.02 1.64 16 37 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 40 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.16 6.87 1.72 -3.13 -0.01 6.87 16 42 H 0.12 6.48 6.14 -2.91 -0.02 6.46 16 Total: -1.00 -71.54 342.92 3.38 -68.17 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 1.06 Total: 38.57 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.64 Total: -10.36 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.28 Total: -102.70 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.07 Total: -31.59 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -71.54 3.38 -68.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898966417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.692 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds