Wall clock time and date at job start Tue Mar 31 2020 13:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48499 * 109.47049 * 275.38841 * 3 2 1 5 5 H 1.48502 * 109.46957 * 35.38724 * 3 2 1 6 6 H 1.48500 * 109.46884 * 155.38431 * 3 2 1 7 7 C 1.39943 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 342.09520 * 7 2 1 9 9 C 1.41401 * 119.99611 * 162.08912 * 7 2 1 10 10 C 1.40739 * 120.24353 * 329.77501 * 9 7 2 11 11 C 1.37599 * 119.74236 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24996 * 359.72490 * 11 10 9 13 13 C 1.38616 * 120.49769 * 0.55619 * 12 11 10 14 14 C 1.37635 * 120.25180 * 359.43991 * 13 12 11 15 15 C 1.50697 * 120.13029 * 180.29925 * 14 13 12 16 16 C 1.50701 * 109.47024 * 265.00398 * 15 14 13 17 17 O 1.21281 * 120.00168 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99890 * 180.02562 * 16 15 14 19 19 C 1.39408 * 119.99950 * 180.02562 * 18 16 15 20 20 N 1.32637 * 120.08289 * 0.02562 * 19 18 16 21 21 C 1.32177 * 119.92624 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.08891 * 359.97438 * 21 20 19 23 23 N 1.32214 * 120.16884 * 0.02591 * 22 21 20 24 24 C 1.31983 * 120.07506 * 359.65959 * 23 22 21 25 25 C 1.50697 * 120.04937 * 180.32596 * 24 23 22 26 26 C 1.52995 * 117.49877 * 9.03508 * 25 24 23 27 27 C 1.53000 * 117.49874 * 300.37336 * 25 24 23 28 28 H 0.96989 * 120.00516 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12992 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.87499 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.75525 * 180.29613 * 12 11 10 32 32 H 1.08001 * 119.87355 * 179.72352 * 13 12 11 33 33 H 1.08999 * 109.47197 * 25.00407 * 15 14 13 34 34 H 1.09003 * 109.47319 * 145.00542 * 15 14 13 35 35 H 0.97000 * 119.99571 * 359.97438 * 18 16 15 36 36 H 1.07997 * 119.95952 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.91165 * 179.97438 * 22 21 20 38 38 H 1.09006 * 115.55303 * 154.70951 * 25 24 23 39 39 H 1.08994 * 117.50157 * 0.02562 * 26 25 24 40 40 H 1.09004 * 117.49392 * 145.02128 * 26 25 24 41 41 H 1.08994 * 117.50103 * 214.97929 * 27 25 24 42 42 H 1.09001 * 117.49876 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3758 2.1122 -1.3939 5 1 1.5011 2.6172 0.8108 6 1 3.5920 1.4101 0.5832 7 6 2.0080 -1.2119 0.0005 8 1 1.5074 -2.1245 0.2885 9 6 3.3706 -1.2416 -0.3761 10 6 3.8686 -0.3132 -1.3092 11 6 5.1962 -0.3517 -1.6687 12 6 6.0437 -1.2969 -1.1111 13 6 5.5628 -2.2199 -0.1954 14 6 4.2385 -2.1999 0.1789 15 6 3.7202 -3.2003 1.1797 16 6 3.1232 -4.3766 0.4509 17 8 3.1194 -4.4005 -0.7616 18 7 2.5933 -5.4022 1.1468 19 6 2.0415 -6.4905 0.4727 20 7 2.0375 -6.5188 -0.8534 21 6 1.5131 -7.5520 -1.4893 22 6 0.9695 -8.6031 -0.7741 23 7 0.9715 -8.5787 0.5478 24 6 1.4991 -7.5531 1.1896 25 6 1.5077 -7.5293 2.6963 26 6 1.0867 -8.8068 3.4254 27 6 0.1566 -7.5912 3.4116 28 1 -0.4850 0.8399 -0.0004 29 1 3.2111 0.4262 -1.7420 30 1 5.5805 0.3594 -2.3848 31 1 7.0854 -1.3170 -1.3954 32 1 6.2309 -2.9546 0.2293 33 1 4.5409 -3.5421 1.8103 34 1 2.9563 -2.7314 1.7999 35 1 2.5967 -5.3832 2.1166 36 1 1.5091 -7.5754 -2.5690 37 1 0.5413 -9.4457 -1.2967 38 1 2.2914 -6.9244 3.1526 39 1 0.8040 -9.6646 2.8153 40 1 1.5933 -9.0422 4.3615 41 1 0.0516 -7.0274 4.3385 42 1 -0.7386 -7.6486 2.7923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906421180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:28 Heat of formation + Delta-G solvation = 70.805035 kcal Electronic energy + Delta-G solvation = -26404.156573 eV Core-core repulsion = 22736.308236 eV Total energy + Delta-G solvation = -3667.848337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35782 -39.26590 -37.64601 -37.31750 -34.94665 -33.59058 -33.42205 -31.94449 -30.36859 -30.17509 -27.14059 -25.65991 -24.96906 -23.80969 -22.48705 -21.43660 -21.21259 -20.75258 -19.62453 -18.23215 -17.34489 -17.28348 -16.64771 -15.82275 -15.69695 -15.53828 -15.17883 -14.67667 -14.37676 -14.30678 -13.81582 -13.67646 -13.52521 -13.34232 -12.70596 -12.17517 -12.05097 -11.91355 -11.76199 -11.62421 -11.41197 -11.31642 -11.24285 -10.93783 -10.80904 -10.74075 -10.71324 -10.25755 -10.07042 -9.72015 -9.63164 -9.57356 -9.12730 -8.65214 -8.16758 -7.60425 -7.51289 -6.93443 -4.48399 0.82653 1.26809 2.51176 2.71653 3.04962 3.12725 3.16734 3.23063 3.32314 3.54539 3.97806 3.98855 4.01634 4.30673 4.35572 4.52540 4.66513 4.83359 4.86332 5.11531 5.25671 5.32019 5.42490 5.50562 5.54583 5.65358 5.79508 5.85274 5.89375 6.03149 6.06962 6.15253 6.18029 6.24234 6.55628 6.63781 6.72038 6.95009 7.20267 7.21335 7.42939 7.55773 7.65878 7.75126 7.90207 8.02273 8.13826 8.35612 8.66074 8.67991 8.82131 10.08699 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003638 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.417086 B = 7694.967733 C = 8293.853050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.444 4.444 8 H 0.088 0.912 9 C 0.111 3.889 10 C -0.232 4.232 11 C -0.078 4.078 12 C -0.242 4.242 13 C -0.066 4.066 14 C -0.172 4.172 15 C -0.070 4.070 16 C 0.500 3.500 17 O -0.447 6.447 18 N -0.661 5.661 19 C 0.338 3.662 20 N -0.430 5.430 21 C 0.083 3.917 22 C 0.001 3.999 23 N -0.415 5.415 24 C 0.070 3.930 25 C -0.117 4.117 26 C -0.154 4.154 27 C -0.158 4.158 28 H 0.284 0.716 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.415 0.585 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -13.272 6.779 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.473 4.473 8 H 0.106 0.894 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.262 4.262 13 C -0.084 4.084 14 C -0.174 4.174 15 C -0.110 4.110 16 C 0.287 3.713 17 O -0.313 6.313 18 N -0.310 5.310 19 C 0.102 3.898 20 N -0.150 5.150 21 C -0.078 4.078 22 C -0.160 4.160 23 N -0.129 5.129 24 C -0.076 4.076 25 C -0.136 4.136 26 C -0.191 4.191 27 C -0.196 4.196 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.252 0.748 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.539 -13.043 5.871 14.386 hybrid contribution 0.123 0.775 0.151 0.799 sum 1.662 -12.268 6.022 13.767 Atomic orbital electron populations 1.69707 1.08105 1.30146 1.35321 1.26161 0.94667 1.01699 0.90850 0.86338 0.81302 0.79842 0.78863 1.19729 1.21946 1.16642 1.19408 0.92985 0.95710 1.39184 0.89437 1.17469 0.92582 0.90102 0.89030 1.21003 0.95532 1.04672 1.03944 1.20610 0.93872 0.97236 0.97942 1.20330 0.98125 1.01821 1.05877 1.20428 0.94499 0.96801 0.96716 1.19001 0.93161 1.01729 1.03489 1.20312 1.00748 0.91967 0.97969 1.21618 0.77915 0.82772 0.89022 1.90804 1.50658 1.76449 1.13349 1.44121 1.58467 1.17769 1.10616 1.19310 0.92525 0.88146 0.89805 1.68629 1.15342 1.24582 1.06410 1.23751 0.93093 0.89027 1.01956 1.23458 1.01835 1.00470 0.90201 1.67946 1.12008 1.23177 1.09740 1.20684 1.00312 0.91237 0.95391 1.20729 1.00540 1.04583 0.87795 1.22947 1.02596 0.92254 1.01314 1.23017 0.93054 1.01734 1.01755 0.90550 0.88295 0.88967 0.88966 0.89072 0.89925 0.87777 0.74758 0.81343 0.81607 0.86374 0.87461 0.88470 0.88001 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.65 13.93 55.55 0.77 -20.88 16 2 C 0.09 2.23 5.41 -17.34 -0.09 2.13 16 3 Si 0.91 20.79 24.52 -169.99 -4.17 16.62 16 4 H -0.27 -6.12 6.72 56.52 0.38 -5.74 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.63 6.86 56.52 0.39 -5.24 16 7 C -0.44 -11.92 8.56 -37.74 -0.32 -12.24 16 8 H 0.09 2.48 7.00 -52.49 -0.37 2.11 16 9 C 0.11 2.83 5.10 -106.82 -0.54 2.29 16 10 C -0.23 -5.79 7.17 -38.87 -0.28 -6.07 16 11 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 12 C -0.24 -5.19 10.05 -39.29 -0.39 -5.58 16 13 C -0.07 -1.41 9.66 -39.66 -0.38 -1.79 16 14 C -0.17 -3.90 4.43 -103.92 -0.46 -4.36 16 15 C -0.07 -1.29 5.19 -29.04 -0.15 -1.44 16 16 C 0.50 9.81 7.41 -10.98 -0.08 9.73 16 17 O -0.45 -10.87 14.31 5.56 0.08 -10.79 16 18 N -0.66 -10.31 5.33 -11.32 -0.06 -10.37 16 19 C 0.34 5.55 7.41 -154.40 -1.14 4.41 16 20 N -0.43 -7.87 8.05 -12.17 -0.10 -7.97 16 21 C 0.08 1.16 11.22 -17.39 -0.20 0.96 16 22 C 0.00 0.01 11.21 -17.38 -0.19 -0.19 16 23 N -0.41 -5.54 9.50 -9.13 -0.09 -5.63 16 24 C 0.07 0.97 6.47 -82.18 -0.53 0.44 16 25 C -0.12 -1.21 5.54 -91.78 -0.51 -1.72 16 26 C -0.15 -1.36 10.03 -26.69 -0.27 -1.63 16 27 C -0.16 -1.47 10.24 -26.69 -0.27 -1.74 16 28 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 29 H 0.10 2.46 4.77 -52.49 -0.25 2.21 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.10 1.88 7.13 -51.93 -0.37 1.51 16 35 H 0.41 4.72 6.74 -40.82 -0.28 4.44 16 36 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.12 0.98 6.74 -51.93 -0.35 0.63 16 39 H 0.11 1.05 7.59 -51.93 -0.39 0.66 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -33.82 352.47 -9.45 -43.27 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.98 Total: 9.41 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -6.22 Total: -18.98 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.53 Total: -44.85 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.17 Total: 16.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.82 -9.45 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906421180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.076 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds