Wall clock time and date at job start Tue Mar 31 2020 13:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48499 * 109.47049 * 275.38841 * 3 2 1 5 5 H 1.48502 * 109.46957 * 35.38724 * 3 2 1 6 6 H 1.48500 * 109.46884 * 155.38431 * 3 2 1 7 7 C 1.39943 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 342.09520 * 7 2 1 9 9 C 1.41401 * 119.99611 * 162.08912 * 7 2 1 10 10 C 1.40739 * 120.24353 * 329.77501 * 9 7 2 11 11 C 1.37599 * 119.74236 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24996 * 359.72490 * 11 10 9 13 13 C 1.38616 * 120.49769 * 0.55619 * 12 11 10 14 14 C 1.37635 * 120.25180 * 359.43991 * 13 12 11 15 15 C 1.50697 * 120.13029 * 180.29925 * 14 13 12 16 16 C 1.50701 * 109.47024 * 265.00398 * 15 14 13 17 17 O 1.21281 * 120.00168 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99890 * 180.02562 * 16 15 14 19 19 C 1.39408 * 119.99950 * 180.02562 * 18 16 15 20 20 N 1.32637 * 120.08289 * 0.02562 * 19 18 16 21 21 C 1.32177 * 119.92624 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.08891 * 359.97438 * 21 20 19 23 23 N 1.32214 * 120.16884 * 0.02591 * 22 21 20 24 24 C 1.31983 * 120.07506 * 359.65959 * 23 22 21 25 25 C 1.50697 * 120.04937 * 180.32596 * 24 23 22 26 26 C 1.52995 * 117.49877 * 9.03508 * 25 24 23 27 27 C 1.53000 * 117.49874 * 300.37336 * 25 24 23 28 28 H 0.96989 * 120.00516 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12992 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.87499 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.75525 * 180.29613 * 12 11 10 32 32 H 1.08001 * 119.87355 * 179.72352 * 13 12 11 33 33 H 1.08999 * 109.47197 * 25.00407 * 15 14 13 34 34 H 1.09003 * 109.47319 * 145.00542 * 15 14 13 35 35 H 0.97000 * 119.99571 * 359.97438 * 18 16 15 36 36 H 1.07997 * 119.95952 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.91165 * 179.97438 * 22 21 20 38 38 H 1.09006 * 115.55303 * 154.70951 * 25 24 23 39 39 H 1.08994 * 117.50157 * 0.02562 * 26 25 24 40 40 H 1.09004 * 117.49392 * 145.02128 * 26 25 24 41 41 H 1.08994 * 117.50103 * 214.97929 * 27 25 24 42 42 H 1.09001 * 117.49876 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3758 2.1122 -1.3939 5 1 1.5011 2.6172 0.8108 6 1 3.5920 1.4101 0.5832 7 6 2.0080 -1.2119 0.0005 8 1 1.5074 -2.1245 0.2885 9 6 3.3706 -1.2416 -0.3761 10 6 3.8686 -0.3132 -1.3092 11 6 5.1962 -0.3517 -1.6687 12 6 6.0437 -1.2969 -1.1111 13 6 5.5628 -2.2199 -0.1954 14 6 4.2385 -2.1999 0.1789 15 6 3.7202 -3.2003 1.1797 16 6 3.1232 -4.3766 0.4509 17 8 3.1194 -4.4005 -0.7616 18 7 2.5933 -5.4022 1.1468 19 6 2.0415 -6.4905 0.4727 20 7 2.0375 -6.5188 -0.8534 21 6 1.5131 -7.5520 -1.4893 22 6 0.9695 -8.6031 -0.7741 23 7 0.9715 -8.5787 0.5478 24 6 1.4991 -7.5531 1.1896 25 6 1.5077 -7.5293 2.6963 26 6 1.0867 -8.8068 3.4254 27 6 0.1566 -7.5912 3.4116 28 1 -0.4850 0.8399 -0.0004 29 1 3.2111 0.4262 -1.7420 30 1 5.5805 0.3594 -2.3848 31 1 7.0854 -1.3170 -1.3954 32 1 6.2309 -2.9546 0.2293 33 1 4.5409 -3.5421 1.8103 34 1 2.9563 -2.7314 1.7999 35 1 2.5967 -5.3832 2.1166 36 1 1.5091 -7.5754 -2.5690 37 1 0.5413 -9.4457 -1.2967 38 1 2.2914 -6.9244 3.1526 39 1 0.8040 -9.6646 2.8153 40 1 1.5933 -9.0422 4.3615 41 1 0.0516 -7.0274 4.3385 42 1 -0.7386 -7.6486 2.7923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906421180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:26 Heat of formation + Delta-G solvation = 49.561652 kcal Electronic energy + Delta-G solvation = -26405.077755 eV Core-core repulsion = 22736.308236 eV Total energy + Delta-G solvation = -3668.769519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.48330 -40.73924 -39.33276 -38.14392 -36.28210 -35.49373 -34.56029 -33.55076 -32.17906 -31.38749 -28.72069 -26.87228 -26.60100 -25.03681 -23.23217 -23.18253 -22.29305 -22.07667 -21.18390 -19.49757 -19.22195 -18.55207 -17.60341 -17.43891 -17.14109 -16.85752 -16.24551 -16.16407 -15.90908 -15.51558 -15.35508 -15.04725 -14.89882 -14.58815 -14.52973 -13.87095 -13.73406 -13.15872 -12.95314 -12.90472 -12.70334 -12.59992 -12.50928 -12.49797 -12.23914 -12.11361 -11.99281 -11.54172 -11.47494 -11.39214 -11.13431 -11.05052 -10.97887 -9.87332 -9.40327 -9.30288 -9.28378 -8.87022 -6.46181 -0.25452 0.15167 0.77291 0.90225 1.27194 1.39181 1.49299 1.73893 1.85838 2.13603 2.62032 2.63949 3.02905 3.07347 3.23240 3.36153 3.55416 3.85494 3.92852 4.01942 4.11738 4.26042 4.27796 4.29447 4.39564 4.46223 4.51825 4.56762 4.71061 4.83055 4.92381 4.94142 4.95563 5.03766 5.16062 5.18794 5.34498 5.36795 5.50851 5.66257 5.85796 5.94329 6.04672 6.06782 6.28408 6.43592 6.46858 6.78983 6.87761 6.90623 7.29225 8.21030 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003638 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.417086 B = 7694.967733 C = 8293.853050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.048 3.952 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.470 4.470 8 H 0.054 0.946 9 C 0.086 3.914 10 C -0.257 4.257 11 C -0.090 4.090 12 C -0.230 4.230 13 C -0.076 4.076 14 C -0.175 4.175 15 C -0.069 4.069 16 C 0.503 3.497 17 O -0.506 6.506 18 N -0.647 5.647 19 C 0.303 3.697 20 N -0.480 5.480 21 C 0.064 3.936 22 C 0.020 3.980 23 N -0.425 5.425 24 C 0.080 3.920 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.156 4.156 28 H 0.291 0.709 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.432 0.568 36 H 0.190 0.810 37 H 0.209 0.791 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -14.560 8.128 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.171 1.171 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.083 3.917 10 C -0.276 4.276 11 C -0.108 4.108 12 C -0.249 4.249 13 C -0.094 4.094 14 C -0.176 4.176 15 C -0.109 4.109 16 C 0.291 3.709 17 O -0.376 6.376 18 N -0.298 5.298 19 C 0.069 3.931 20 N -0.201 5.201 21 C -0.097 4.097 22 C -0.140 4.140 23 N -0.140 5.140 24 C -0.066 4.066 25 C -0.155 4.155 26 C -0.176 4.176 27 C -0.194 4.194 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.274 0.726 36 H 0.207 0.793 37 H 0.225 0.775 38 H 0.157 0.843 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.637 -14.367 7.273 16.509 hybrid contribution -0.413 0.932 -0.332 1.072 sum 3.224 -13.436 6.940 15.462 Atomic orbital electron populations 1.69748 1.09188 1.31151 1.37986 1.26794 0.95206 1.04120 0.90439 0.85506 0.79927 0.76845 0.78899 1.19588 1.20410 1.17116 1.19312 0.94093 0.94956 1.41591 0.92752 1.17707 0.92494 0.91648 0.89808 1.21148 0.96865 1.05041 1.04573 1.20982 0.93065 0.98284 0.98492 1.20877 0.99682 1.00190 1.04133 1.20904 0.94429 0.97454 0.96581 1.19492 0.93684 1.01161 1.03291 1.20378 1.02253 0.90902 0.97344 1.21702 0.77363 0.83431 0.88391 1.90772 1.53383 1.77878 1.15609 1.43754 1.57730 1.16944 1.11338 1.19541 0.94577 0.89207 0.89793 1.68481 1.16817 1.26785 1.07998 1.24204 0.93425 0.88871 1.03167 1.24111 0.99423 1.00565 0.89908 1.68116 1.12437 1.23051 1.10356 1.21109 0.98421 0.90063 0.97002 1.20962 1.02015 1.06639 0.85881 1.23018 1.01672 0.91169 1.01696 1.23073 0.91829 1.02490 1.02002 0.89892 0.89250 0.86129 0.85398 0.85426 0.85173 0.87971 0.72625 0.79302 0.77457 0.84302 0.88453 0.85869 0.85895 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.01 13.93 21.83 0.30 -47.71 16 2 C 0.05 2.64 5.41 85.26 0.46 3.10 16 3 Si 0.96 43.90 24.52 68.60 1.68 45.59 16 4 H -0.27 -12.05 6.72 99.48 0.67 -11.39 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.25 -11.29 6.86 99.48 0.68 -10.61 16 7 C -0.47 -26.51 8.56 23.46 0.20 -26.31 16 8 H 0.05 3.32 7.00 -2.91 -0.02 3.30 16 9 C 0.09 4.46 5.10 -21.29 -0.11 4.36 16 10 C -0.26 -12.85 7.17 22.73 0.16 -12.69 16 11 C -0.09 -3.89 10.02 22.22 0.22 -3.66 16 12 C -0.23 -9.08 10.05 22.46 0.23 -8.86 16 13 C -0.08 -3.02 9.66 22.22 0.21 -2.80 16 14 C -0.17 -7.80 4.43 -19.41 -0.09 -7.89 16 15 C -0.07 -2.51 5.19 29.10 0.15 -2.36 16 16 C 0.50 20.07 7.41 87.66 0.65 20.72 16 17 O -0.51 -25.55 14.31 -3.03 -0.04 -25.59 16 18 N -0.65 -20.28 5.33 -308.13 -1.64 -21.92 16 19 C 0.30 10.10 7.41 132.87 0.98 11.09 16 20 N -0.48 -18.16 8.05 -192.42 -1.55 -19.71 16 21 C 0.06 1.78 11.22 84.65 0.95 2.73 16 22 C 0.02 0.45 11.21 84.64 0.95 1.40 16 23 N -0.43 -10.86 9.50 -182.80 -1.74 -12.59 16 24 C 0.08 2.13 6.47 42.76 0.28 2.41 16 25 C -0.14 -2.57 5.54 -11.54 -0.06 -2.64 16 26 C -0.14 -2.10 10.03 30.62 0.31 -1.79 16 27 C -0.16 -2.63 10.24 30.62 0.31 -2.31 16 28 H 0.29 14.77 8.30 -92.72 -0.77 14.00 16 29 H 0.09 4.53 4.77 -2.91 -0.01 4.52 16 30 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 32 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.13 3.36 8.05 -2.39 -0.02 3.34 16 34 H 0.10 3.75 7.13 -2.39 -0.02 3.73 16 35 H 0.43 9.49 6.74 -92.71 -0.62 8.86 16 36 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.21 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.14 1.98 6.74 -2.38 -0.02 1.96 16 39 H 0.10 1.70 7.59 -2.39 -0.02 1.68 16 40 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -78.50 352.47 3.21 -75.29 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.38 Total: 32.15 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 5.81 Total: -25.50 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.63 Total: -101.93 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.04 Total: -25.59 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.59 kcal Total: -78.50 3.21 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906421180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.853 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds