Wall clock time and date at job start Tue Mar 31 2020 14:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.47108 * 179.97438 * 18 17 15 20 20 N 1.31809 * 119.08864 * 89.99640 * 19 18 17 21 21 C 1.32351 * 120.76583 * 179.97438 * 20 19 18 22 22 C 1.38568 * 119.02829 * 0.02562 * 21 20 19 23 23 C 1.38413 * 118.59045 * 359.97438 * 22 21 20 24 24 N 1.31766 * 119.09000 * 269.72756 * 19 18 17 25 25 C 1.51169 * 109.71069 * 180.02562 * 23 22 21 26 26 C 1.54404 * 105.19413 * 342.94081 * 25 23 22 27 27 C 1.51054 * 131.53201 * 179.97438 * 22 21 20 28 28 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 30 30 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 33 33 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 35 35 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 36 36 H 1.07991 * 120.48710 * 180.02562 * 21 20 19 37 37 H 1.09001 * 110.29959 * 224.00906 * 25 23 22 38 38 H 1.09003 * 110.29686 * 101.87014 * 25 23 22 39 39 H 1.08995 * 110.81332 * 267.90340 * 26 25 23 40 40 H 1.09006 * 110.98247 * 144.45905 * 26 25 23 41 41 H 1.08998 * 110.31357 * 315.95618 * 27 22 21 42 42 H 1.09002 * 110.30656 * 78.02337 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9585 -5.6610 -3.7462 20 7 5.3680 -6.7866 -3.1958 21 6 6.3323 -7.5013 -3.7535 22 6 6.9100 -7.0495 -4.9292 23 6 6.4543 -5.8634 -5.4781 24 7 5.4816 -5.2047 -4.8662 25 6 7.2171 -5.5631 -6.7482 26 6 8.4747 -6.4566 -6.6858 27 6 8.0085 -7.6257 -5.7912 28 1 -0.4850 0.8400 -0.0004 29 1 3.3594 0.3863 1.6623 30 1 5.7821 0.3556 2.0405 31 1 7.2121 -1.2443 0.8416 32 1 6.2399 -2.8385 -0.7537 33 1 5.4035 -3.8783 -2.0213 34 1 3.1964 -5.5609 -2.5460 35 1 3.2877 -4.3366 -3.8349 36 1 6.6640 -8.4230 -3.2990 37 1 7.5016 -4.5113 -6.7787 38 1 6.6148 -5.8182 -7.6202 39 1 9.3059 -5.9237 -6.2242 40 1 8.7493 -6.8139 -7.6784 41 1 8.8316 -7.9783 -5.1697 42 1 7.6213 -8.4405 -6.4030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909647094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:53 Heat of formation + Delta-G solvation = 34.952123 kcal Electronic energy + Delta-G solvation = -25775.571577 eV Core-core repulsion = 22106.168541 eV Total energy + Delta-G solvation = -3669.403036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.65473 -39.04145 -37.51601 -36.86422 -34.35980 -33.79135 -33.42066 -30.94677 -30.43600 -29.88338 -28.70097 -26.53130 -25.17659 -24.19919 -22.43364 -21.75648 -21.35089 -20.84412 -19.56190 -18.09757 -17.64731 -17.01841 -16.37166 -15.98178 -15.43028 -15.14720 -14.76444 -14.35221 -14.22045 -14.08964 -14.05153 -13.48866 -13.44346 -13.28755 -13.25688 -12.65281 -12.52729 -12.32227 -12.23816 -11.87196 -11.71365 -11.66723 -11.43450 -10.98830 -10.91355 -10.73005 -10.67790 -10.42156 -10.15919 -9.78527 -9.38969 -9.33785 -9.23201 -8.47146 -8.43244 -7.79769 -7.56886 -6.87714 -4.45951 0.58988 0.88230 2.12547 2.62656 3.10794 3.19770 3.28762 3.31496 3.44694 3.78204 3.96839 4.01462 4.04101 4.16082 4.24347 4.41546 4.51582 4.62514 4.77330 4.94597 5.19642 5.23834 5.29531 5.38929 5.41371 5.48857 5.54192 5.66357 5.75437 5.82513 5.89893 5.98994 6.09192 6.19847 6.39870 6.52888 6.80146 6.81497 7.00297 7.11802 7.24860 7.41508 7.60777 7.77301 7.94135 8.03648 8.28713 8.50310 8.66078 8.89191 9.35085 10.08962 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.002865 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.774515 B = 9770.707471 C =10191.566921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.400 4.400 8 H 0.125 0.875 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.065 4.065 12 C -0.255 4.255 13 C -0.040 4.040 14 C -0.247 4.247 15 C 0.566 3.434 16 O -0.525 6.525 17 N -0.739 5.739 18 C 0.197 3.803 19 C 0.312 3.688 20 N -0.500 5.500 21 C 0.158 3.842 22 C -0.210 4.210 23 C 0.164 3.836 24 N -0.496 5.496 25 C -0.075 4.075 26 C -0.119 4.119 27 C -0.072 4.072 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.391 0.609 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.168 -11.883 -11.635 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.216 1.216 7 C -0.427 4.427 8 H 0.142 0.858 9 C 0.112 3.888 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.059 4.059 14 C -0.252 4.252 15 C 0.359 3.641 16 O -0.402 6.402 17 N -0.395 5.395 18 C 0.072 3.928 19 C 0.045 3.955 20 N -0.213 5.213 21 C -0.008 4.008 22 C -0.215 4.215 23 C 0.017 3.983 24 N -0.210 5.210 25 C -0.113 4.113 26 C -0.157 4.157 27 C -0.110 4.110 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.225 0.775 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.185 0.815 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.190 -11.314 -11.301 21.379 hybrid contribution 1.468 0.238 -0.283 1.514 sum 15.658 -11.076 -11.584 22.406 Atomic orbital electron populations 1.69567 1.08211 1.30344 1.33438 1.26385 0.94869 1.01648 0.91257 0.86395 0.81382 0.79795 0.79172 1.19430 1.16524 1.21596 1.20208 0.90828 0.96654 1.35034 0.85756 1.17539 0.93148 0.89426 0.88641 1.21148 0.94687 1.04970 1.03606 1.20732 0.93742 0.96651 0.97233 1.20271 0.97851 1.03189 1.06103 1.20758 0.93561 0.95949 0.95598 1.19336 0.92709 1.06921 1.06196 1.18324 0.86148 0.79771 0.79856 1.90736 1.14061 1.68518 1.66857 1.45847 1.10045 1.39875 1.43782 1.19740 0.90127 0.90743 0.92240 1.23250 0.94737 0.89480 0.88054 1.68411 1.12646 1.07083 1.33199 1.22764 0.89643 0.98042 0.90318 1.22271 1.01547 0.99203 0.98433 1.22247 0.90313 0.90318 0.95413 1.67591 1.09770 1.34227 1.09426 1.21069 0.95061 1.02151 0.92978 1.22356 0.96945 0.95698 1.00681 1.20885 0.95432 0.98288 0.96411 0.90256 0.87735 0.88562 0.88593 0.88978 0.77476 0.89169 0.89247 0.81548 0.88947 0.88585 0.90369 0.89539 0.89943 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.77 13.92 55.56 0.77 -21.00 16 2 C 0.08 2.13 5.47 -17.30 -0.09 2.04 16 3 Si 0.91 21.01 24.51 -169.99 -4.17 16.84 16 4 H -0.27 -5.90 6.76 56.52 0.38 -5.52 16 5 H -0.24 -5.76 6.72 56.52 0.38 -5.38 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.40 -11.39 8.31 -37.81 -0.31 -11.70 16 8 H 0.12 3.90 5.96 -52.49 -0.31 3.59 16 9 C 0.12 3.07 5.03 -106.54 -0.54 2.54 16 10 C -0.23 -5.41 7.00 -38.88 -0.27 -5.68 16 11 C -0.06 -1.38 10.01 -39.60 -0.40 -1.77 16 12 C -0.25 -5.15 10.03 -39.37 -0.39 -5.55 16 13 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 14 C -0.25 -5.95 5.92 -104.37 -0.62 -6.57 16 15 C 0.57 13.31 7.72 -12.51 -0.10 13.22 16 16 O -0.52 -14.18 13.54 5.27 0.07 -14.10 16 17 N -0.74 -13.98 5.50 -62.56 -0.34 -14.32 16 18 C 0.20 3.37 6.10 -5.19 -0.03 3.34 16 19 C 0.31 4.74 7.01 -157.20 -1.10 3.64 16 20 N -0.50 -7.01 10.34 -10.73 -0.11 -7.12 16 21 C 0.16 1.67 11.31 -17.21 -0.19 1.47 16 22 C -0.21 -1.98 6.20 -104.26 -0.65 -2.63 16 23 C 0.16 1.86 7.37 -82.03 -0.60 1.25 16 24 N -0.50 -7.23 10.34 -6.86 -0.07 -7.30 16 25 C -0.07 -0.55 6.76 -26.92 -0.18 -0.73 16 26 C -0.12 -0.58 7.08 -25.26 -0.18 -0.76 16 27 C -0.07 -0.40 6.76 -26.97 -0.18 -0.58 16 28 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16 29 H 0.10 2.46 5.00 -52.49 -0.26 2.20 16 30 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.62 6.42 -52.49 -0.34 1.28 16 33 H 0.39 6.71 6.51 -40.82 -0.27 6.44 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -32.64 347.88 -9.83 -42.47 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.00 Total: 8.97 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -6.22 Total: -9.68 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.25 Total: -49.74 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.10 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.17 Total: 16.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.64 -9.83 -42.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909647094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.425 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds