Wall clock time and date at job start Tue Mar 31 2020 14:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.47108 * 179.97438 * 18 17 15 20 20 N 1.31809 * 119.08864 * 89.99640 * 19 18 17 21 21 C 1.32351 * 120.76583 * 179.97438 * 20 19 18 22 22 C 1.38568 * 119.02829 * 0.02562 * 21 20 19 23 23 C 1.38413 * 118.59045 * 359.97438 * 22 21 20 24 24 N 1.31766 * 119.09000 * 269.72756 * 19 18 17 25 25 C 1.51169 * 109.71069 * 180.02562 * 23 22 21 26 26 C 1.54404 * 105.19413 * 342.94081 * 25 23 22 27 27 C 1.51054 * 131.53201 * 179.97438 * 22 21 20 28 28 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 30 30 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 33 33 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 35 35 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 36 36 H 1.07991 * 120.48710 * 180.02562 * 21 20 19 37 37 H 1.09001 * 110.29959 * 224.00906 * 25 23 22 38 38 H 1.09003 * 110.29686 * 101.87014 * 25 23 22 39 39 H 1.08995 * 110.81332 * 267.90340 * 26 25 23 40 40 H 1.09006 * 110.98247 * 144.45905 * 26 25 23 41 41 H 1.08998 * 110.31357 * 315.95618 * 27 22 21 42 42 H 1.09002 * 110.30656 * 78.02337 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9585 -5.6610 -3.7462 20 7 5.3680 -6.7866 -3.1958 21 6 6.3323 -7.5013 -3.7535 22 6 6.9100 -7.0495 -4.9292 23 6 6.4543 -5.8634 -5.4781 24 7 5.4816 -5.2047 -4.8662 25 6 7.2171 -5.5631 -6.7482 26 6 8.4747 -6.4566 -6.6858 27 6 8.0085 -7.6257 -5.7912 28 1 -0.4850 0.8400 -0.0004 29 1 3.3594 0.3863 1.6623 30 1 5.7821 0.3556 2.0405 31 1 7.2121 -1.2443 0.8416 32 1 6.2399 -2.8385 -0.7537 33 1 5.4035 -3.8783 -2.0213 34 1 3.1964 -5.5609 -2.5460 35 1 3.2877 -4.3366 -3.8349 36 1 6.6640 -8.4230 -3.2990 37 1 7.5016 -4.5113 -6.7787 38 1 6.6148 -5.8182 -7.6202 39 1 9.3059 -5.9237 -6.2242 40 1 8.7493 -6.8139 -7.6784 41 1 8.8316 -7.9783 -5.1697 42 1 7.6213 -8.4405 -6.4030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909647094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:52 Heat of formation + Delta-G solvation = 12.535688 kcal Electronic energy + Delta-G solvation = -25776.543627 eV Core-core repulsion = 22106.168541 eV Total energy + Delta-G solvation = -3670.375086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.54931 -40.84289 -38.88720 -38.06465 -35.96350 -35.37677 -34.69882 -32.38509 -32.28342 -31.11280 -29.52177 -27.78479 -26.90859 -25.05893 -24.09617 -23.07607 -22.47499 -21.84655 -21.31552 -19.52770 -19.01303 -18.63275 -17.34526 -17.25174 -17.01050 -16.40055 -16.04097 -15.84397 -15.71514 -15.57812 -15.36336 -14.99785 -14.57077 -14.33889 -14.20536 -14.01592 -13.98450 -13.84917 -13.67701 -13.24583 -13.02376 -12.69711 -12.54069 -12.24619 -12.20333 -12.13954 -12.05167 -11.81179 -11.62806 -11.61281 -11.09590 -10.47627 -10.28598 -10.15391 -10.05392 -9.55868 -9.43858 -8.83290 -6.49851 -0.34221 0.02067 0.30679 0.81598 1.23624 1.37464 1.46749 2.08256 2.12283 2.20856 2.50672 2.69298 2.78708 2.93279 3.43009 3.50886 3.54247 3.68532 3.97783 4.15024 4.18144 4.20006 4.26241 4.30065 4.40773 4.54005 4.69969 4.72301 4.76027 4.79740 4.81484 4.89448 4.98375 5.00329 5.15651 5.28105 5.30150 5.34302 5.38506 5.44362 5.65724 5.83402 5.91353 5.93986 6.24605 6.45027 6.57980 6.75538 6.84475 6.97504 7.52147 8.21046 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.002865 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.774515 B = 9770.707471 C =10191.566921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.245 1.245 5 H -0.250 1.250 6 H -0.279 1.279 7 C -0.449 4.449 8 H 0.073 0.927 9 C 0.101 3.899 10 C -0.244 4.244 11 C -0.059 4.059 12 C -0.230 4.230 13 C -0.040 4.040 14 C -0.265 4.265 15 C 0.559 3.441 16 O -0.571 6.571 17 N -0.719 5.719 18 C 0.202 3.798 19 C 0.293 3.707 20 N -0.521 5.521 21 C 0.147 3.853 22 C -0.191 4.191 23 C 0.139 3.861 24 N -0.524 5.524 25 C -0.076 4.076 26 C -0.110 4.110 27 C -0.069 4.069 28 H 0.294 0.706 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.402 0.598 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.203 0.797 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.080 -12.429 -12.257 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.169 1.169 5 H -0.174 1.174 6 H -0.206 1.206 7 C -0.477 4.477 8 H 0.091 0.909 9 C 0.097 3.903 10 C -0.263 4.263 11 C -0.077 4.077 12 C -0.249 4.249 13 C -0.059 4.059 14 C -0.270 4.270 15 C 0.352 3.648 16 O -0.452 6.452 17 N -0.374 5.374 18 C 0.076 3.924 19 C 0.025 3.975 20 N -0.236 5.236 21 C -0.017 4.017 22 C -0.195 4.195 23 C -0.007 4.007 24 N -0.239 5.239 25 C -0.114 4.114 26 C -0.147 4.147 27 C -0.107 4.107 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.238 0.762 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.122 0.878 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.162 -11.895 -11.932 26.274 hybrid contribution -0.010 0.149 -0.173 0.228 sum 20.151 -11.746 -12.105 26.279 Atomic orbital electron populations 1.69620 1.09525 1.31462 1.36685 1.27135 0.95577 1.04491 0.90628 0.85487 0.79424 0.75850 0.80303 1.16933 1.17375 1.20596 1.19962 0.92400 0.95687 1.39687 0.90912 1.17798 0.92548 0.90812 0.89124 1.21266 0.96422 1.05016 1.03601 1.21256 0.92436 0.96943 0.97092 1.20915 1.00149 1.00615 1.03220 1.21141 0.92171 0.96767 0.95814 1.19695 0.94481 1.06563 1.06272 1.18528 0.85838 0.80201 0.80197 1.90735 1.16196 1.70011 1.68230 1.45580 1.10139 1.38855 1.42784 1.19587 0.91216 0.90190 0.91399 1.22536 0.95457 0.90382 0.89106 1.68328 1.14057 1.06992 1.34177 1.23386 0.88719 0.98718 0.90907 1.22789 1.01214 0.98011 0.97524 1.23035 0.89775 0.91091 0.96793 1.67491 1.11236 1.35586 1.09554 1.21274 0.95929 1.02814 0.91391 1.22406 0.95479 0.94706 1.02129 1.21068 0.94530 0.98830 0.96228 0.89541 0.87707 0.84243 0.83837 0.85386 0.76152 0.90226 0.90738 0.78053 0.89230 0.87545 0.89931 0.86846 0.87787 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.20 13.92 21.88 0.30 -49.89 16 2 C 0.04 2.07 5.47 85.37 0.47 2.54 16 3 Si 0.97 44.45 24.51 68.60 1.68 46.13 16 4 H -0.24 -10.17 6.76 99.48 0.67 -9.50 16 5 H -0.25 -11.61 6.72 99.48 0.67 -10.94 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.45 -27.62 8.31 23.41 0.19 -27.42 16 8 H 0.07 5.11 5.96 -2.91 -0.02 5.09 16 9 C 0.10 5.48 5.03 -21.11 -0.11 5.37 16 10 C -0.24 -11.44 7.00 22.72 0.16 -11.28 16 11 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 12 C -0.23 -8.07 10.03 22.41 0.22 -7.85 16 13 C -0.04 -1.56 9.52 22.50 0.21 -1.34 16 14 C -0.27 -12.97 5.92 -19.70 -0.12 -13.09 16 15 C 0.56 27.80 7.72 86.67 0.67 28.47 16 16 O -0.57 -33.83 13.54 -4.05 -0.05 -33.89 16 17 N -0.72 -28.14 5.50 -470.08 -2.58 -30.73 16 18 C 0.20 7.38 6.10 85.63 0.52 7.91 16 19 C 0.29 9.12 7.01 138.76 0.97 10.09 16 20 N -0.52 -14.47 10.34 -187.87 -1.94 -16.41 16 21 C 0.15 2.78 11.31 84.69 0.96 3.74 16 22 C -0.19 -3.07 6.20 -19.63 -0.12 -3.19 16 23 C 0.14 2.94 7.37 42.66 0.31 3.26 16 24 N -0.52 -15.38 10.34 -175.63 -1.82 -17.19 16 25 C -0.08 -0.93 6.76 30.47 0.21 -0.73 16 26 C -0.11 -0.59 7.08 31.55 0.22 -0.37 16 27 C -0.07 -0.44 6.76 30.44 0.21 -0.23 16 28 H 0.29 15.52 8.29 -92.71 -0.77 14.75 16 29 H 0.11 4.84 5.00 -2.91 -0.01 4.83 16 30 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.13 3.98 6.42 -2.91 -0.02 3.96 16 33 H 0.40 13.64 6.51 -92.71 -0.60 13.03 16 34 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.20 2.17 8.06 -2.92 -0.02 2.15 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -80.30 347.88 1.20 -79.10 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.40 Total: 29.03 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.21 Total: -6.14 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -6.04 Total: -114.23 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.05 Total: -33.89 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.68 Total: 46.13 kcal Total: -80.30 1.20 -79.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909647094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.637 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds