Wall clock time and date at job start Tue Mar 31 2020 14:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 119.99670 * 2 1 4 4 H 1.48497 * 109.47336 * 239.99952 * 3 2 1 5 5 H 1.48503 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46836 * 120.00327 * 3 2 1 7 7 C 1.39936 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 162.61211 * 7 2 1 9 9 C 1.41436 * 119.99874 * 342.60741 * 7 2 1 10 10 C 1.40780 * 120.17919 * 154.90942 * 9 7 2 11 11 C 1.37712 * 120.04526 * 180.02562 * 10 9 7 12 12 C 1.38381 * 120.40863 * 359.74019 * 11 10 9 13 13 C 1.39880 * 120.35553 * 0.51592 * 12 11 10 14 14 C 1.47884 * 120.02619 * 179.76273 * 13 12 11 15 15 O 1.21544 * 120.00484 * 179.72745 * 14 13 12 16 16 N 1.34780 * 119.99451 * 359.44753 * 14 13 12 17 17 C 1.46505 * 119.99781 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47133 * 180.02562 * 17 16 14 19 19 N 1.31810 * 119.09706 * 89.99618 * 18 17 16 20 20 C 1.32351 * 120.76933 * 179.97438 * 19 18 17 21 21 C 1.38572 * 119.02762 * 359.97438 * 20 19 18 22 22 C 1.38407 * 118.58824 * 359.97438 * 21 20 19 23 23 N 1.31775 * 119.08781 * 269.72376 * 18 17 16 24 24 C 1.51175 * 109.70979 * 180.02562 * 22 21 20 25 25 C 1.54408 * 105.19279 * 342.94253 * 24 22 21 26 26 C 1.51059 * 131.53050 * 179.97438 * 21 20 19 27 27 C 1.39031 * 119.95077 * 359.48715 * 13 12 11 28 28 H 0.96995 * 119.99903 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98268 * 0.04365 * 10 9 7 30 30 H 1.07999 * 119.80107 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.81951 * 180.27609 * 12 11 10 32 32 H 0.97001 * 120.00478 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.46507 * 299.99947 * 17 16 14 34 34 H 1.08995 * 109.47495 * 59.99589 * 17 16 14 35 35 H 1.08000 * 120.48621 * 180.02562 * 20 19 18 36 36 H 1.08992 * 110.30462 * 224.01320 * 24 22 21 37 37 H 1.09003 * 110.29747 * 101.86628 * 24 22 21 38 38 H 1.09005 * 110.80941 * 267.90187 * 25 24 22 39 39 H 1.08994 * 110.98201 * 144.45944 * 25 24 22 40 40 H 1.08991 * 110.31030 * 315.95614 * 26 21 20 41 41 H 1.09008 * 110.30249 * 78.02282 * 26 21 20 42 42 H 1.07999 * 120.20404 * 180.22461 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2801 9 6 1.3493 -2.4089 0.3651 10 6 1.8188 -3.6484 -0.1095 11 6 1.1751 -4.8122 0.2478 12 6 0.0684 -4.7740 1.0777 13 6 -0.4157 -3.5514 1.5547 14 6 -1.6021 -3.5187 2.4369 15 8 -2.0195 -2.4566 2.8551 16 7 -2.2240 -4.6664 2.7726 17 6 -3.3997 -4.6341 3.6462 18 6 -3.9011 -6.0381 3.8657 19 7 -3.4317 -6.7348 4.8814 20 6 -3.8494 -7.9706 5.1054 21 6 -4.7918 -8.5263 4.2550 22 6 -5.2627 -7.7645 3.1997 23 7 -4.8008 -6.5335 3.0401 24 6 -6.2750 -8.5606 2.4080 25 6 -6.0527 -10.0296 2.8282 26 6 -5.4539 -9.8840 4.2440 27 6 0.2227 -2.3674 1.2034 28 1 -0.4850 0.8400 0.0004 29 1 2.6847 -3.6867 -0.7539 30 1 1.5389 -5.7609 -0.1182 31 1 -0.4265 -5.6928 1.3554 32 1 -1.8932 -5.5138 2.4359 33 1 -3.1280 -4.1916 4.6046 34 1 -4.1829 -4.0370 3.1793 35 1 -3.4621 -8.5372 5.9392 36 1 -6.0971 -8.4420 1.3392 37 1 -7.2868 -8.2439 2.6612 38 1 -5.3473 -10.5215 2.1584 39 1 -6.9967 -10.5734 2.8608 40 1 -4.7167 -10.6660 4.4255 41 1 -6.2424 -9.9264 4.9956 42 1 -0.1454 -1.4215 1.5722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909658984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:45 Heat of formation + Delta-G solvation = 26.045037 kcal Electronic energy + Delta-G solvation = -25328.177790 eV Core-core repulsion = 21658.388514 eV Total energy + Delta-G solvation = -3669.789276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71772 -39.17086 -37.51109 -36.92267 -34.48054 -33.82554 -33.61976 -30.97585 -29.99786 -29.41784 -28.77985 -26.60406 -25.22231 -24.29276 -22.56618 -21.62938 -21.35497 -20.87837 -19.58849 -18.16292 -17.85515 -16.71270 -16.42212 -15.76299 -15.56764 -15.03058 -14.82603 -14.60330 -14.49744 -14.32185 -13.73562 -13.47926 -13.35329 -13.33144 -13.12854 -12.66170 -12.51014 -12.46126 -12.32844 -11.74407 -11.70730 -11.61574 -11.13240 -11.06229 -11.04494 -10.78466 -10.72492 -10.48520 -10.02375 -9.67562 -9.48764 -9.40267 -9.18688 -8.98160 -8.69990 -7.61057 -7.49561 -6.77090 -4.39027 0.52279 0.82491 2.22783 2.84475 3.09727 3.11521 3.18543 3.18947 3.37746 3.70599 3.88729 3.93573 3.94911 4.03403 4.17835 4.36597 4.48910 4.66624 4.72955 4.87484 5.16208 5.19488 5.25273 5.35085 5.44923 5.46995 5.59609 5.62523 5.63725 5.77479 5.88147 6.09973 6.12097 6.29246 6.72271 6.74249 6.76410 7.00659 7.03476 7.23474 7.40076 7.71500 7.76789 7.86797 7.93811 8.07956 8.20406 8.52407 8.82357 8.85506 8.93702 10.17816 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.002400 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.444692 B =11666.183360 C =12094.370651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.125 4.125 14 C 0.569 3.431 15 O -0.543 6.543 16 N -0.728 5.728 17 C 0.194 3.806 18 C 0.310 3.690 19 N -0.499 5.499 20 C 0.158 3.842 21 C -0.208 4.208 22 C 0.165 3.835 23 N -0.496 5.496 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.072 4.072 27 C -0.091 4.091 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.399 0.601 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 -18.492 7.130 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.128 4.128 14 C 0.360 3.640 15 O -0.420 6.420 16 N -0.383 5.383 17 C 0.069 3.931 18 C 0.042 3.958 19 N -0.213 5.213 20 C -0.007 4.007 21 C -0.212 4.212 22 C 0.018 3.982 23 N -0.209 5.209 24 C -0.113 4.113 25 C -0.157 4.157 26 C -0.111 4.111 27 C -0.111 4.111 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.234 0.766 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.185 0.815 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.051 -16.577 7.289 21.752 hybrid contribution 0.151 -0.628 -0.022 0.646 sum -11.900 -17.205 7.267 22.146 Atomic orbital electron populations 1.69780 1.07554 1.29893 1.33550 1.25966 0.94786 1.01529 0.92338 0.86319 0.80093 0.80112 0.79951 1.18995 1.20227 1.18720 1.19546 0.98029 0.90982 1.40357 0.90106 1.17596 0.91198 0.92468 0.89105 1.21098 1.03450 0.92802 1.05699 1.20425 0.96079 0.96739 0.98361 1.20324 1.01432 0.94576 1.07335 1.19409 0.96390 0.95354 1.01694 1.18817 0.83180 0.82400 0.79623 1.90703 1.66374 1.29884 1.55051 1.45788 1.30311 1.10311 1.51938 1.19799 0.89223 0.87437 0.96664 1.23140 0.89442 0.96743 0.86474 1.68391 1.25990 1.07038 1.19862 1.22771 0.90750 0.90442 0.96764 1.22288 1.00214 0.99892 0.98802 1.22252 0.93575 0.89147 0.93258 1.67574 1.11532 1.13137 1.28705 1.21078 0.96937 0.92815 1.00448 1.22360 1.02061 0.95341 0.95929 1.20896 0.99543 0.92398 0.98223 1.21636 0.96387 0.96365 0.96704 0.90360 0.88588 0.88947 0.89514 0.76578 0.88954 0.89012 0.81452 0.88886 0.88556 0.90314 0.89493 0.89871 0.89533 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.02 10.97 55.55 0.61 -20.41 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.22 9.05 -37.73 -0.34 -12.56 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.66 5.57 -106.87 -0.59 2.06 16 10 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 11 C -0.10 -2.14 10.01 -39.72 -0.40 -2.54 16 12 C -0.22 -4.74 9.55 -38.91 -0.37 -5.11 16 13 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 14 C 0.57 12.97 7.77 -12.31 -0.10 12.87 16 15 O -0.54 -13.89 16.33 5.33 0.09 -13.80 16 16 N -0.73 -13.33 5.50 -62.42 -0.34 -13.68 16 17 C 0.19 3.14 6.10 -5.19 -0.03 3.11 16 18 C 0.31 4.51 7.01 -157.20 -1.10 3.41 16 19 N -0.50 -6.73 10.34 -10.73 -0.11 -6.84 16 20 C 0.16 1.60 11.31 -17.20 -0.19 1.41 16 21 C -0.21 -1.88 6.20 -104.26 -0.65 -2.52 16 22 C 0.16 1.80 7.37 -82.03 -0.60 1.19 16 23 N -0.50 -6.96 10.34 -6.87 -0.07 -7.03 16 24 C -0.07 -0.53 6.77 -26.91 -0.18 -0.71 16 25 C -0.12 -0.55 7.08 -25.25 -0.18 -0.73 16 26 C -0.07 -0.38 6.76 -26.97 -0.18 -0.56 16 27 C -0.09 -2.47 8.23 -38.44 -0.32 -2.78 16 28 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 29 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.63 6.38 -52.49 -0.33 1.29 16 32 H 0.40 6.77 6.48 -40.82 -0.26 6.51 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.13 3.92 5.77 -52.49 -0.30 3.62 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -32.07 358.11 -10.89 -42.96 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.10 Total: 10.27 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -6.33 Total: -10.84 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.08 Total: -47.96 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.07 -10.89 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909658984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.006 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds