Wall clock time and date at job start Tue Mar 31 2020 14:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 119.99670 * 2 1 4 4 H 1.48497 * 109.47336 * 239.99952 * 3 2 1 5 5 H 1.48503 * 109.47533 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46836 * 120.00327 * 3 2 1 7 7 C 1.39936 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 162.61211 * 7 2 1 9 9 C 1.41436 * 119.99874 * 342.60741 * 7 2 1 10 10 C 1.40780 * 120.17919 * 154.90942 * 9 7 2 11 11 C 1.37712 * 120.04526 * 180.02562 * 10 9 7 12 12 C 1.38381 * 120.40863 * 359.74019 * 11 10 9 13 13 C 1.39880 * 120.35553 * 0.51592 * 12 11 10 14 14 C 1.47884 * 120.02619 * 179.76273 * 13 12 11 15 15 O 1.21544 * 120.00484 * 179.72745 * 14 13 12 16 16 N 1.34780 * 119.99451 * 359.44753 * 14 13 12 17 17 C 1.46505 * 119.99781 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47133 * 180.02562 * 17 16 14 19 19 N 1.31810 * 119.09706 * 89.99618 * 18 17 16 20 20 C 1.32351 * 120.76933 * 179.97438 * 19 18 17 21 21 C 1.38572 * 119.02762 * 359.97438 * 20 19 18 22 22 C 1.38407 * 118.58824 * 359.97438 * 21 20 19 23 23 N 1.31775 * 119.08781 * 269.72376 * 18 17 16 24 24 C 1.51175 * 109.70979 * 180.02562 * 22 21 20 25 25 C 1.54408 * 105.19279 * 342.94253 * 24 22 21 26 26 C 1.51059 * 131.53050 * 179.97438 * 21 20 19 27 27 C 1.39031 * 119.95077 * 359.48715 * 13 12 11 28 28 H 0.96995 * 119.99903 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98268 * 0.04365 * 10 9 7 30 30 H 1.07999 * 119.80107 * 180.02562 * 11 10 9 31 31 H 1.07994 * 119.81951 * 180.27609 * 12 11 10 32 32 H 0.97001 * 120.00478 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.46507 * 299.99947 * 17 16 14 34 34 H 1.08995 * 109.47495 * 59.99589 * 17 16 14 35 35 H 1.08000 * 120.48621 * 180.02562 * 20 19 18 36 36 H 1.08992 * 110.30462 * 224.01320 * 24 22 21 37 37 H 1.09003 * 110.29747 * 101.86628 * 24 22 21 38 38 H 1.09005 * 110.80941 * 267.90187 * 25 24 22 39 39 H 1.08994 * 110.98201 * 144.45944 * 25 24 22 40 40 H 1.08991 * 110.31030 * 315.95614 * 26 21 20 41 41 H 1.09008 * 110.30249 * 78.02282 * 26 21 20 42 42 H 1.07999 * 120.20404 * 180.22461 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2801 9 6 1.3493 -2.4089 0.3651 10 6 1.8188 -3.6484 -0.1095 11 6 1.1751 -4.8122 0.2478 12 6 0.0684 -4.7740 1.0777 13 6 -0.4157 -3.5514 1.5547 14 6 -1.6021 -3.5187 2.4369 15 8 -2.0195 -2.4566 2.8551 16 7 -2.2240 -4.6664 2.7726 17 6 -3.3997 -4.6341 3.6462 18 6 -3.9011 -6.0381 3.8657 19 7 -3.4317 -6.7348 4.8814 20 6 -3.8494 -7.9706 5.1054 21 6 -4.7918 -8.5263 4.2550 22 6 -5.2627 -7.7645 3.1997 23 7 -4.8008 -6.5335 3.0401 24 6 -6.2750 -8.5606 2.4080 25 6 -6.0527 -10.0296 2.8282 26 6 -5.4539 -9.8840 4.2440 27 6 0.2227 -2.3674 1.2034 28 1 -0.4850 0.8400 0.0004 29 1 2.6847 -3.6867 -0.7539 30 1 1.5389 -5.7609 -0.1182 31 1 -0.4265 -5.6928 1.3554 32 1 -1.8932 -5.5138 2.4359 33 1 -3.1280 -4.1916 4.6046 34 1 -4.1829 -4.0370 3.1793 35 1 -3.4621 -8.5372 5.9392 36 1 -6.0971 -8.4420 1.3392 37 1 -7.2868 -8.2439 2.6612 38 1 -5.3473 -10.5215 2.1584 39 1 -6.9967 -10.5734 2.8608 40 1 -4.7167 -10.6660 4.4255 41 1 -6.2424 -9.9264 4.9956 42 1 -0.1454 -1.4215 1.5722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909658984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:44 Heat of formation + Delta-G solvation = 6.157497 kcal Electronic energy + Delta-G solvation = -25329.040179 eV Core-core repulsion = 21658.388514 eV Total energy + Delta-G solvation = -3670.651665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.56438 -40.93274 -38.91395 -38.11827 -35.96676 -35.54316 -34.72529 -32.43812 -31.37476 -31.19865 -29.56437 -27.75300 -27.05829 -25.11159 -24.14639 -22.91725 -22.58059 -21.85704 -21.34834 -19.64724 -19.02180 -18.25523 -17.43364 -17.14178 -16.90450 -16.54692 -16.29638 -16.13652 -15.53286 -15.48692 -15.16834 -14.92631 -14.49126 -14.33958 -14.27550 -14.06408 -13.96840 -13.84942 -13.47246 -13.04012 -12.96340 -12.80924 -12.54854 -12.23194 -12.21829 -12.14448 -11.94263 -11.83293 -11.62276 -11.53983 -11.07490 -10.93824 -10.33092 -10.29576 -10.09389 -9.51250 -9.41704 -8.66948 -6.39333 -0.36070 0.00896 0.32952 0.98858 1.36653 1.48125 1.51069 1.97377 2.04174 2.19463 2.48515 2.72066 2.77343 2.90406 3.42256 3.53006 3.66671 3.67613 3.87752 4.05583 4.15507 4.24114 4.26082 4.36915 4.48479 4.53679 4.71690 4.75284 4.78801 4.87594 4.89150 4.99939 5.06671 5.14612 5.15391 5.19949 5.29726 5.30152 5.34823 5.48868 5.82044 5.88169 5.90669 6.02768 6.24790 6.39426 6.59975 6.86256 6.92367 6.95561 7.16461 8.30006 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.002400 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.444692 B =11666.183360 C =12094.370651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.087 0.913 9 C 0.068 3.932 10 C -0.214 4.214 11 C -0.094 4.094 12 C -0.201 4.201 13 C -0.136 4.136 14 C 0.567 3.433 15 O -0.581 6.581 16 N -0.707 5.707 17 C 0.198 3.802 18 C 0.290 3.710 19 N -0.520 5.520 20 C 0.147 3.853 21 C -0.190 4.190 22 C 0.140 3.860 23 N -0.523 5.523 24 C -0.077 4.077 25 C -0.110 4.110 26 C -0.069 4.069 27 C -0.128 4.128 28 H 0.287 0.713 29 H 0.112 0.888 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.408 0.592 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.203 0.797 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.204 -22.347 7.415 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.524 4.524 8 H 0.105 0.895 9 C 0.066 3.934 10 C -0.234 4.234 11 C -0.112 4.112 12 C -0.220 4.220 13 C -0.139 4.139 14 C 0.357 3.643 15 O -0.462 6.462 16 N -0.360 5.360 17 C 0.073 3.927 18 C 0.022 3.978 19 N -0.234 5.234 20 C -0.017 4.017 21 C -0.194 4.194 22 C -0.007 4.007 23 N -0.238 5.238 24 C -0.114 4.114 25 C -0.148 4.148 26 C -0.107 4.107 27 C -0.149 4.149 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.244 0.756 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.220 0.780 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.408 -20.509 7.573 25.138 hybrid contribution 0.141 0.267 -0.063 0.308 sum -12.267 -20.242 7.510 24.832 Atomic orbital electron populations 1.69886 1.09301 1.30777 1.35100 1.26897 0.95431 1.05073 0.91288 0.85213 0.78669 0.75307 0.80325 1.17504 1.19696 1.18457 1.19847 0.98492 0.92019 1.42087 0.89539 1.17958 0.91700 0.94031 0.89740 1.21413 1.03890 0.92679 1.05426 1.20897 0.95228 0.97843 0.97227 1.20755 1.00909 0.94825 1.05555 1.19679 0.96750 0.95651 1.01841 1.18713 0.83132 0.82982 0.79489 1.90676 1.67405 1.31535 1.56562 1.45557 1.30186 1.09193 1.51074 1.19731 0.87890 0.89451 0.95672 1.22536 0.91120 0.96158 0.88007 1.68322 1.26789 1.08654 1.19615 1.23387 0.90937 0.89514 0.97880 1.22790 0.98443 1.01284 0.96881 1.23015 0.94425 0.88473 0.94758 1.67486 1.11955 1.15075 1.29245 1.21274 0.96402 0.93950 0.99799 1.22409 1.03498 0.93541 0.95355 1.21072 1.00257 0.90227 0.99144 1.21449 0.98240 0.96235 0.98966 0.90220 0.87007 0.84395 0.85739 0.75564 0.89352 0.89939 0.78035 0.89292 0.87443 0.90046 0.86839 0.87848 0.87496 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.93 10.97 21.82 0.24 -46.69 16 2 C 0.03 1.50 5.14 85.25 0.44 1.94 16 3 Si 0.98 40.21 29.59 68.60 2.03 42.24 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.50 -27.34 9.05 23.47 0.21 -27.12 16 8 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 9 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 10 C -0.21 -10.25 9.78 22.77 0.22 -10.03 16 11 C -0.09 -3.89 10.01 22.18 0.22 -3.67 16 12 C -0.20 -8.46 9.55 22.70 0.22 -8.24 16 13 C -0.14 -6.79 5.87 -20.14 -0.12 -6.91 16 14 C 0.57 26.80 7.77 86.80 0.67 27.48 16 15 O -0.58 -31.60 16.33 -3.85 -0.06 -31.66 16 16 N -0.71 -26.24 5.50 -469.67 -2.58 -28.82 16 17 C 0.20 6.63 6.10 85.63 0.52 7.15 16 18 C 0.29 8.47 7.01 138.75 0.97 9.44 16 19 N -0.52 -13.59 10.34 -187.86 -1.94 -15.53 16 20 C 0.15 2.63 11.31 84.69 0.96 3.59 16 21 C -0.19 -2.89 6.20 -19.63 -0.12 -3.01 16 22 C 0.14 2.81 7.37 42.66 0.31 3.13 16 23 N -0.52 -14.58 10.34 -175.64 -1.82 -16.40 16 24 C -0.08 -0.89 6.77 30.48 0.21 -0.68 16 25 C -0.11 -0.56 7.08 31.55 0.22 -0.34 16 26 C -0.07 -0.41 6.76 30.44 0.21 -0.20 16 27 C -0.13 -7.36 8.23 23.01 0.19 -7.17 16 28 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 29 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 30 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.12 4.26 6.38 -2.91 -0.02 4.24 16 32 H 0.41 13.50 6.48 -92.71 -0.60 12.90 16 33 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.10 0.29 8.14 -2.39 -0.02 0.28 16 41 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 42 H 0.10 6.41 5.77 -2.91 -0.02 6.39 16 Total: -1.00 -75.57 358.11 1.55 -74.02 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.47 Total: 33.82 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.22 Total: -10.98 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -6.10 Total: -107.44 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.06 Total: -31.66 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -75.57 1.55 -74.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909658984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.178 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds