Wall clock time and date at job start Tue Mar 31 2020 14:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48508 * 109.46916 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47384 * 30.00188 * 3 2 1 6 6 H 1.48505 * 109.46984 * 150.00361 * 3 2 1 7 7 C 1.40232 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99398 * 197.85986 * 7 2 1 9 9 C 1.41106 * 119.99891 * 17.86921 * 7 2 1 10 10 C 1.40891 * 120.09870 * 204.62711 * 9 7 2 11 11 C 1.36313 * 119.89059 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.47639 * 119.89944 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99928 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00439 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00066 * 179.72346 * 15 13 12 17 17 C 1.50706 * 109.46794 * 180.27223 * 16 15 13 18 18 N 1.31806 * 119.08992 * 90.00152 * 17 16 15 19 19 C 1.32356 * 120.76884 * 179.97438 * 18 17 16 20 20 C 1.38566 * 119.02719 * 359.97438 * 19 18 17 21 21 C 1.38411 * 118.58797 * 0.02562 * 20 19 18 22 22 N 1.31762 * 119.09398 * 269.72841 * 17 16 15 23 23 C 1.51174 * 109.70707 * 180.02562 * 21 20 19 24 24 C 1.54401 * 105.19561 * 342.94082 * 23 21 20 25 25 C 1.51052 * 131.53272 * 179.97438 * 20 19 18 26 26 C 1.40014 * 120.20563 * 0.25482 * 12 11 10 27 27 C 1.36313 * 120.11074 * 359.48223 * 26 12 11 28 28 H 0.97001 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.05626 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.94608 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99318 * 359.97438 * 15 13 12 32 32 H 1.08995 * 109.47570 * 300.27098 * 16 15 13 33 33 H 1.09003 * 109.47153 * 60.28040 * 16 15 13 34 34 H 1.07996 * 120.48936 * 180.02562 * 19 18 17 35 35 H 1.08999 * 110.30129 * 224.00416 * 23 21 20 36 36 H 1.09006 * 110.29696 * 101.86766 * 23 21 20 37 37 H 1.09005 * 110.80845 * 267.90321 * 24 23 21 38 38 H 1.09000 * 110.98097 * 144.46281 * 24 23 21 39 39 H 1.08998 * 110.30937 * 315.96416 * 25 20 19 40 40 H 1.08999 * 110.30540 * 78.02491 * 25 20 19 41 41 H 1.08008 * 119.94451 * 179.74516 * 26 12 11 42 42 H 1.08000 * 120.06136 * 180.23313 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0464 -1.4002 5 1 1.4380 2.6527 0.7001 6 1 3.5381 1.4401 0.7000 7 6 2.0075 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2874 9 6 1.3530 -2.4071 -0.3739 10 6 1.8266 -3.6494 0.0923 11 6 1.1914 -4.7990 -0.2725 12 6 0.0696 -4.7466 -1.1086 13 6 -0.6146 -5.9945 -1.5013 14 8 -0.2034 -7.0657 -1.0990 15 7 -1.6943 -5.9466 -2.3065 16 6 -2.3695 -7.1854 -2.7010 17 6 -3.5333 -6.8585 -3.6010 18 7 -3.3399 -6.8017 -4.9035 19 6 -4.3384 -6.5180 -5.7246 20 6 -5.5970 -6.2805 -5.1957 21 6 -5.7623 -6.3488 -3.8232 22 7 -4.7172 -6.6426 -3.0644 23 6 -7.2028 -6.0585 -3.4682 24 6 -7.8001 -5.3824 -4.7213 25 6 -6.9123 -5.9387 -5.8551 26 6 -0.4019 -3.5147 -1.5783 27 6 0.2235 -2.3594 -1.2146 28 1 -0.4850 0.8401 0.0004 29 1 2.6921 -3.6910 0.7370 30 1 1.5540 -5.7519 0.0841 31 1 -2.0221 -5.0920 -2.6277 32 1 -1.6681 -7.8280 -3.2330 33 1 -2.7318 -7.7009 -1.8115 34 1 -4.1750 -6.4730 -6.7912 35 1 -7.2531 -5.3834 -2.6140 36 1 -7.7327 -6.9858 -3.2500 37 1 -7.7099 -4.2981 -4.6564 38 1 -8.8404 -5.6750 -4.8641 39 1 -6.7639 -5.1822 -6.6257 40 1 -7.3632 -6.8328 -6.2856 41 1 -1.2652 -3.4795 -2.2265 42 1 -0.1432 -1.4094 -1.5744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909672754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:57 Heat of formation + Delta-G solvation = 21.694351 kcal Electronic energy + Delta-G solvation = -25215.250801 eV Core-core repulsion = 21545.272865 eV Total energy + Delta-G solvation = -3669.977936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68124 -39.06800 -37.50143 -36.99597 -34.40514 -33.85869 -33.71355 -30.94871 -30.02213 -29.42790 -28.78766 -26.87207 -25.43209 -24.20780 -22.18076 -21.56948 -21.32682 -20.85294 -19.65284 -18.12555 -17.52882 -17.26804 -16.40487 -15.95970 -15.61205 -15.24248 -14.78148 -14.44633 -14.30974 -14.04585 -13.82026 -13.44597 -13.33253 -13.29901 -13.13267 -12.73611 -12.48663 -12.31216 -12.06400 -11.88887 -11.71080 -11.67120 -11.34402 -11.27919 -11.01486 -10.94368 -10.74816 -10.63844 -10.03377 -9.55174 -9.45606 -9.36948 -9.34273 -8.93116 -8.63261 -7.70480 -7.52967 -7.02528 -4.59143 0.56168 0.85888 2.24383 2.92377 2.96279 2.98730 3.05602 3.24004 3.41926 3.74460 3.74910 3.88601 3.99611 4.09691 4.21620 4.40130 4.52311 4.58129 4.76377 4.91300 5.19212 5.23105 5.28619 5.38574 5.48621 5.50160 5.59037 5.66909 5.68418 5.80965 6.05080 6.09411 6.16000 6.34049 6.76949 6.78241 6.83943 6.85592 7.05722 7.14710 7.44922 7.65944 7.80059 7.87529 7.90347 8.08196 8.20850 8.41225 8.64326 8.76676 9.05997 9.89448 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002638 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.392732 B =10613.301750 C =12001.112093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.021 4.021 12 C -0.282 4.282 13 C 0.577 3.423 14 O -0.572 6.572 15 N -0.733 5.733 16 C 0.197 3.803 17 C 0.310 3.690 18 N -0.500 5.500 19 C 0.158 3.842 20 C -0.208 4.208 21 C 0.165 3.835 22 N -0.496 5.496 23 C -0.075 4.075 24 C -0.119 4.119 25 C -0.072 4.072 26 C -0.061 4.061 27 C -0.178 4.178 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 -5.557 -11.447 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.286 4.286 13 C 0.372 3.628 14 O -0.454 6.454 15 N -0.387 5.387 16 C 0.071 3.929 17 C 0.042 3.958 18 N -0.213 5.213 19 C -0.007 4.007 20 C -0.212 4.212 21 C 0.018 3.982 22 N -0.210 5.210 23 C -0.113 4.113 24 C -0.157 4.157 25 C -0.111 4.111 26 C -0.081 4.081 27 C -0.197 4.197 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.185 0.815 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.859 -6.407 -10.533 19.308 hybrid contribution -0.642 1.393 -0.772 1.717 sum -15.502 -5.014 -11.305 19.830 Atomic orbital electron populations 1.69752 1.07920 1.30009 1.31799 1.26109 0.94811 1.01899 0.91912 0.86203 0.80586 0.79812 0.79628 1.18950 1.20035 1.18255 1.19858 0.98449 0.91166 1.37530 0.89662 1.17790 0.90345 0.92212 0.87104 1.20716 1.04617 0.92610 1.07856 1.20361 0.92803 0.97223 0.93595 1.18837 1.04486 0.90801 1.14488 1.18559 0.78209 0.89795 0.76270 1.90641 1.66359 1.31614 1.56803 1.45749 1.31921 1.08108 1.52966 1.19750 0.88586 0.88655 0.95900 1.23175 0.91805 0.92214 0.88631 1.68390 1.34084 1.13928 1.04930 1.22767 0.86770 0.90741 1.00453 1.22282 0.97668 1.03619 0.97652 1.22251 0.95272 0.90426 0.90268 1.67565 0.99146 1.12679 1.41604 1.21075 0.87971 1.02365 0.99857 1.22355 0.99444 1.00911 0.92997 1.20886 0.90340 1.01651 0.98174 1.20457 0.97271 0.92670 0.97668 1.20964 0.99943 0.96839 1.01978 0.90263 0.88310 0.87966 0.76773 0.89181 0.89278 0.81475 0.88872 0.88589 0.90288 0.89503 0.89869 0.89565 0.89623 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.69 10.95 55.56 0.61 -18.09 16 2 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.42 29.60 -169.99 -5.03 12.39 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -11.11 9.05 -37.75 -0.34 -11.45 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.13 3.33 5.58 -106.80 -0.60 2.73 16 10 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 11 C -0.02 -0.50 9.52 -39.61 -0.38 -0.87 16 12 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 13 C 0.58 12.79 7.76 -12.42 -0.10 12.69 16 14 O -0.57 -13.92 16.32 5.29 0.09 -13.83 16 15 N -0.73 -13.55 5.50 -62.50 -0.34 -13.89 16 16 C 0.20 3.19 6.10 -5.19 -0.03 3.16 16 17 C 0.31 4.61 7.01 -157.21 -1.10 3.50 16 18 N -0.50 -6.93 10.34 -10.73 -0.11 -7.04 16 19 C 0.16 1.67 11.31 -17.20 -0.19 1.48 16 20 C -0.21 -1.98 6.20 -104.27 -0.65 -2.63 16 21 C 0.17 1.87 7.37 -82.03 -0.60 1.27 16 22 N -0.50 -7.15 10.34 -6.86 -0.07 -7.22 16 23 C -0.07 -0.56 6.77 -26.92 -0.18 -0.74 16 24 C -0.12 -0.61 7.08 -25.27 -0.18 -0.79 16 25 C -0.07 -0.41 6.76 -26.99 -0.18 -0.59 16 26 C -0.06 -1.42 9.47 -39.61 -0.38 -1.79 16 27 C -0.18 -4.46 8.64 -39.27 -0.34 -4.80 16 28 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.36 7.63 -52.48 -0.40 1.96 16 31 H 0.40 7.00 6.46 -40.82 -0.26 6.74 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 1.73 6.37 -52.48 -0.33 1.40 16 42 H 0.12 3.03 6.15 -52.49 -0.32 2.71 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -30.69 357.82 -10.90 -41.59 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.10 Total: 11.37 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -6.34 Total: -10.67 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.08 Total: -46.24 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.69 -10.90 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909672754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds