Wall clock time and date at job start Tue Mar 31 2020 14:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48508 * 109.46916 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47384 * 30.00188 * 3 2 1 6 6 H 1.48505 * 109.46984 * 150.00361 * 3 2 1 7 7 C 1.40232 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99398 * 197.85986 * 7 2 1 9 9 C 1.41106 * 119.99891 * 17.86921 * 7 2 1 10 10 C 1.40891 * 120.09870 * 204.62711 * 9 7 2 11 11 C 1.36313 * 119.89059 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.47639 * 119.89944 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99928 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00439 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00066 * 179.72346 * 15 13 12 17 17 C 1.50706 * 109.46794 * 180.27223 * 16 15 13 18 18 N 1.31806 * 119.08992 * 90.00152 * 17 16 15 19 19 C 1.32356 * 120.76884 * 179.97438 * 18 17 16 20 20 C 1.38566 * 119.02719 * 359.97438 * 19 18 17 21 21 C 1.38411 * 118.58797 * 0.02562 * 20 19 18 22 22 N 1.31762 * 119.09398 * 269.72841 * 17 16 15 23 23 C 1.51174 * 109.70707 * 180.02562 * 21 20 19 24 24 C 1.54401 * 105.19561 * 342.94082 * 23 21 20 25 25 C 1.51052 * 131.53272 * 179.97438 * 20 19 18 26 26 C 1.40014 * 120.20563 * 0.25482 * 12 11 10 27 27 C 1.36313 * 120.11074 * 359.48223 * 26 12 11 28 28 H 0.97001 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.05626 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.94608 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99318 * 359.97438 * 15 13 12 32 32 H 1.08995 * 109.47570 * 300.27098 * 16 15 13 33 33 H 1.09003 * 109.47153 * 60.28040 * 16 15 13 34 34 H 1.07996 * 120.48936 * 180.02562 * 19 18 17 35 35 H 1.08999 * 110.30129 * 224.00416 * 23 21 20 36 36 H 1.09006 * 110.29696 * 101.86766 * 23 21 20 37 37 H 1.09005 * 110.80845 * 267.90321 * 24 23 21 38 38 H 1.09000 * 110.98097 * 144.46281 * 24 23 21 39 39 H 1.08998 * 110.30937 * 315.96416 * 25 20 19 40 40 H 1.08999 * 110.30540 * 78.02491 * 25 20 19 41 41 H 1.08008 * 119.94451 * 179.74516 * 26 12 11 42 42 H 1.08000 * 120.06136 * 180.23313 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0464 -1.4002 5 1 1.4380 2.6527 0.7001 6 1 3.5381 1.4401 0.7000 7 6 2.0075 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2874 9 6 1.3530 -2.4071 -0.3739 10 6 1.8266 -3.6494 0.0923 11 6 1.1914 -4.7990 -0.2725 12 6 0.0696 -4.7466 -1.1086 13 6 -0.6146 -5.9945 -1.5013 14 8 -0.2034 -7.0657 -1.0990 15 7 -1.6943 -5.9466 -2.3065 16 6 -2.3695 -7.1854 -2.7010 17 6 -3.5333 -6.8585 -3.6010 18 7 -3.3399 -6.8017 -4.9035 19 6 -4.3384 -6.5180 -5.7246 20 6 -5.5970 -6.2805 -5.1957 21 6 -5.7623 -6.3488 -3.8232 22 7 -4.7172 -6.6426 -3.0644 23 6 -7.2028 -6.0585 -3.4682 24 6 -7.8001 -5.3824 -4.7213 25 6 -6.9123 -5.9387 -5.8551 26 6 -0.4019 -3.5147 -1.5783 27 6 0.2235 -2.3594 -1.2146 28 1 -0.4850 0.8401 0.0004 29 1 2.6921 -3.6910 0.7370 30 1 1.5540 -5.7519 0.0841 31 1 -2.0221 -5.0920 -2.6277 32 1 -1.6681 -7.8280 -3.2330 33 1 -2.7318 -7.7009 -1.8115 34 1 -4.1750 -6.4730 -6.7912 35 1 -7.2531 -5.3834 -2.6140 36 1 -7.7327 -6.9858 -3.2500 37 1 -7.7099 -4.2981 -4.6564 38 1 -8.8404 -5.6750 -4.8641 39 1 -6.7639 -5.1822 -6.6257 40 1 -7.3632 -6.8328 -6.2856 41 1 -1.2652 -3.4795 -2.2265 42 1 -0.1432 -1.4094 -1.5744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909672754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:56 Heat of formation + Delta-G solvation = 3.924706 kcal Electronic energy + Delta-G solvation = -25216.021350 eV Core-core repulsion = 21545.272865 eV Total energy + Delta-G solvation = -3670.748486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55574 -40.79888 -38.99238 -38.11092 -35.81085 -35.69442 -34.71953 -32.40984 -31.38106 -31.24918 -29.62018 -28.18873 -26.93873 -25.05224 -23.75605 -22.93577 -22.55170 -21.86406 -21.38396 -19.39478 -19.03723 -18.80887 -17.47831 -17.15761 -17.04425 -16.45707 -16.06313 -15.77859 -15.57118 -15.51602 -15.17213 -14.92237 -14.50562 -14.33178 -14.08808 -13.96461 -13.85991 -13.84924 -13.66915 -13.22249 -13.02983 -12.87880 -12.63839 -12.39497 -12.23200 -12.15684 -11.83395 -11.78262 -11.62330 -11.40093 -11.14879 -10.85634 -10.30113 -10.22947 -10.08945 -9.60921 -9.44347 -8.81287 -6.50433 -0.34978 0.00600 0.39916 1.12693 1.38117 1.42627 1.53172 2.08018 2.08497 2.16336 2.50651 2.74773 2.77223 2.91641 3.41699 3.52854 3.66307 3.67674 3.95995 4.13660 4.18937 4.24401 4.26263 4.29926 4.43238 4.54067 4.71000 4.74840 4.78701 4.88282 4.89873 4.99053 5.00871 5.12309 5.14091 5.26735 5.28637 5.31586 5.35801 5.56068 5.77982 5.88792 5.91688 5.97110 6.19598 6.50870 6.54108 6.74638 6.85985 6.95954 7.31488 8.13985 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.002638 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.392732 B =10613.301750 C =12001.112093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.470 4.470 8 H 0.088 0.912 9 C 0.102 3.898 10 C -0.251 4.251 11 C -0.029 4.029 12 C -0.293 4.293 13 C 0.577 3.423 14 O -0.598 6.598 15 N -0.719 5.719 16 C 0.201 3.799 17 C 0.289 3.711 18 N -0.521 5.521 19 C 0.146 3.854 20 C -0.192 4.192 21 C 0.139 3.861 22 N -0.523 5.523 23 C -0.076 4.076 24 C -0.111 4.111 25 C -0.069 4.069 26 C -0.054 4.054 27 C -0.197 4.197 28 H 0.297 0.703 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.402 0.598 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.202 0.798 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.786 -4.363 -13.288 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.106 0.894 9 C 0.099 3.901 10 C -0.270 4.270 11 C -0.049 4.049 12 C -0.298 4.298 13 C 0.371 3.629 14 O -0.482 6.482 15 N -0.371 5.371 16 C 0.076 3.924 17 C 0.021 3.979 18 N -0.235 5.235 19 C -0.018 4.018 20 C -0.196 4.196 21 C -0.007 4.007 22 N -0.238 5.238 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.107 4.107 26 C -0.073 4.073 27 C -0.216 4.216 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.238 0.762 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.219 0.781 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.965 -5.221 -12.399 21.652 hybrid contribution -0.151 0.975 -0.257 1.020 sum -17.116 -4.246 -12.656 21.706 Atomic orbital electron populations 1.69775 1.09336 1.31670 1.31341 1.26981 0.95552 1.04977 0.90764 0.85075 0.79109 0.75031 0.79838 1.18335 1.18900 1.17957 1.20146 0.98845 0.92099 1.38607 0.89392 1.18143 0.91114 0.93054 0.87817 1.20874 1.05217 0.92580 1.08360 1.20517 0.93174 0.97316 0.93849 1.19081 1.04577 0.91702 1.14408 1.18376 0.78921 0.88876 0.76681 1.90619 1.67370 1.32198 1.58024 1.45586 1.30687 1.09358 1.51469 1.19698 0.89241 0.87345 0.96154 1.22673 0.91622 0.94698 0.88933 1.68326 1.35776 1.14662 1.04715 1.23379 0.86676 0.90149 1.01609 1.22784 0.98810 1.00781 0.97232 1.23021 0.96102 0.90245 0.91356 1.67487 0.99803 1.13617 1.42878 1.21268 0.85870 1.03163 1.01076 1.22405 1.00654 1.00689 0.91121 1.21058 0.87995 1.03122 0.98494 1.20638 0.97545 0.91877 0.97277 1.20985 1.00624 0.97154 1.02874 0.89162 0.87378 0.87502 0.76229 0.89408 0.89860 0.78119 0.89413 0.87253 0.90277 0.86719 0.88012 0.87372 0.87076 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.67 10.95 21.87 0.24 -38.43 16 2 C 0.04 1.70 5.14 85.35 0.44 2.14 16 3 Si 0.99 35.00 29.60 68.60 2.03 37.03 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.47 -23.95 9.05 23.46 0.21 -23.74 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 9 C 0.10 5.40 5.58 -21.28 -0.12 5.28 16 10 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 11 C -0.03 -1.45 9.52 22.25 0.21 -1.24 16 12 C -0.29 -14.10 5.89 -19.94 -0.12 -14.22 16 13 C 0.58 26.12 7.76 86.73 0.67 26.79 16 14 O -0.60 -29.77 16.32 -4.00 -0.07 -29.83 16 15 N -0.72 -27.01 5.50 -469.90 -2.58 -29.59 16 16 C 0.20 6.72 6.10 85.64 0.52 7.24 16 17 C 0.29 8.70 7.01 138.76 0.97 9.67 16 18 N -0.52 -14.23 10.34 -187.87 -1.94 -16.17 16 19 C 0.15 2.82 11.31 84.69 0.96 3.78 16 20 C -0.19 -3.20 6.20 -19.63 -0.12 -3.32 16 21 C 0.14 2.99 7.37 42.66 0.31 3.30 16 22 N -0.52 -15.14 10.34 -175.63 -1.82 -16.95 16 23 C -0.08 -0.98 6.77 30.47 0.21 -0.77 16 24 C -0.11 -0.73 7.08 31.54 0.22 -0.50 16 25 C -0.07 -0.50 6.76 30.43 0.21 -0.30 16 26 C -0.05 -2.54 9.47 22.25 0.21 -2.32 16 27 C -0.20 -10.08 8.64 22.47 0.19 -9.89 16 28 H 0.30 12.77 8.29 -92.71 -0.77 12.01 16 29 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.11 5.08 7.63 -2.91 -0.02 5.06 16 31 H 0.40 14.27 6.46 -92.71 -0.60 13.67 16 32 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.11 4.48 6.37 -2.91 -0.02 4.46 16 42 H 0.11 5.85 6.15 -2.91 -0.02 5.83 16 Total: -1.00 -68.36 357.82 1.54 -66.82 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.47 Total: 37.69 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.20 Total: -10.56 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -6.10 Total: -101.14 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.07 Total: -29.83 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -68.36 1.54 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909672754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.749 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds