Wall clock time and date at job start Tue Mar 31 2020 14:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47034 * 239.99819 * 3 2 1 5 5 H 1.48494 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46887 * 119.99654 * 3 2 1 7 7 C 1.37881 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99857 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46888 * 299.99784 * 9 7 2 11 11 O 1.42892 * 109.47281 * 59.99846 * 9 7 2 12 12 C 1.53004 * 109.46731 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.46711 * 172.67021 * 12 9 7 14 14 C 1.46909 * 110.99779 * 201.20938 * 13 12 9 15 15 C 1.50695 * 109.46773 * 139.24190 * 14 13 12 16 16 C 1.38242 * 120.00420 * 134.56214 * 15 14 13 17 17 C 1.38219 * 120.01372 * 179.97438 * 16 15 14 18 18 C 1.38259 * 120.02627 * 0.05189 * 17 16 15 19 19 C 1.38195 * 120.01397 * 359.96888 * 18 17 16 20 20 C 1.38327 * 120.01127 * 314.28615 * 15 14 13 21 21 Cl 1.73602 * 120.01281 * 359.97438 * 20 15 14 22 22 C 1.46901 * 111.00353 * 77.25795 * 13 12 9 23 23 C 1.54256 * 110.03348 * 175.75691 * 22 13 12 24 24 C 1.54966 * 104.16241 * 217.13588 * 23 22 13 25 25 C 1.54896 * 102.77437 * 37.88831 * 24 23 22 26 26 C 1.53879 * 110.03198 * 58.53731 * 22 13 12 27 27 H 0.97001 * 119.99902 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99870 * 63.44699 * 11 9 7 29 29 H 1.08999 * 109.47117 * 52.67033 * 12 9 7 30 30 H 1.09000 * 109.46679 * 292.66691 * 12 9 7 31 31 H 1.08999 * 109.47175 * 259.24486 * 14 13 12 32 32 H 1.09000 * 109.46754 * 19.24469 * 14 13 12 33 33 H 1.08001 * 119.98954 * 0.02562 * 16 15 14 34 34 H 1.08002 * 119.98542 * 180.02562 * 17 16 15 35 35 H 1.08002 * 119.99136 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.00756 * 180.02562 * 19 18 17 37 37 H 1.08999 * 110.01389 * 297.14964 * 22 13 12 38 38 H 1.09006 * 110.49158 * 335.78236 * 23 22 13 39 39 H 1.09002 * 110.48930 * 98.42765 * 23 22 13 40 40 H 1.09004 * 110.72068 * 279.57690 * 24 23 22 41 41 H 1.09003 * 110.92476 * 156.29886 * 24 23 22 42 42 H 1.08999 * 110.48362 * 203.41015 * 25 24 23 43 43 H 1.09001 * 110.59596 * 80.82094 * 25 24 23 44 44 H 1.08996 * 110.03604 * 238.57446 * 26 22 13 45 45 H 1.09000 * 110.03191 * 0.02562 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2453 -3.6621 0.0018 13 7 1.5192 -4.9268 0.1785 14 6 2.4114 -5.9803 0.6808 15 6 1.6890 -6.7962 1.7216 16 6 1.7604 -8.1765 1.6901 17 6 1.0984 -8.9250 2.6450 18 6 0.3635 -8.2940 3.6316 19 6 0.2910 -6.9143 3.6638 20 6 0.9590 -6.1642 2.7121 21 17 0.8752 -4.4308 2.7570 22 6 0.8689 -5.3398 -1.0723 23 6 0.2035 -6.7197 -0.8914 24 6 0.4312 -7.4313 -2.2490 25 6 1.8575 -6.9720 -2.6415 26 6 1.9199 -5.4998 -2.1849 27 1 -0.4850 0.8401 -0.0004 28 1 0.9259 -2.5830 -1.9965 29 1 2.9544 -3.5329 0.8195 30 1 2.7831 -3.6812 -0.9461 31 1 2.7109 -6.6267 -0.1442 32 1 3.2964 -5.5253 1.1256 33 1 2.3344 -8.6699 0.9197 34 1 1.1548 -10.0032 2.6202 35 1 -0.1540 -8.8794 4.3772 36 1 -0.2828 -6.4215 4.4348 37 1 0.1232 -4.6013 -1.3666 38 1 0.6854 -7.2730 -0.0853 39 1 -0.8624 -6.6062 -0.6933 40 1 -0.2987 -7.0977 -2.9865 41 1 0.3926 -8.5144 -2.1320 42 1 1.9978 -7.0431 -3.7201 43 1 2.6085 -7.5654 -2.1200 44 1 1.6837 -4.8397 -3.0194 45 1 2.9124 -5.2715 -1.7965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929525834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:24 Heat of formation + Delta-G solvation = -40.745691 kcal Electronic energy + Delta-G solvation = -26685.593774 eV Core-core repulsion = 23114.015728 eV Total energy + Delta-G solvation = -3571.578046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09340 -39.55844 -37.55036 -36.94255 -35.53539 -34.20907 -32.74993 -31.45543 -30.23553 -29.47771 -28.24226 -27.02873 -24.81203 -23.45494 -22.67097 -22.15061 -21.22397 -19.90918 -18.92631 -17.82287 -17.73145 -16.67879 -16.56959 -16.39883 -15.98080 -15.87700 -15.63055 -15.12859 -14.84472 -14.58340 -14.38309 -14.10673 -13.92875 -13.83879 -13.19116 -13.04979 -12.84088 -12.81713 -12.62345 -12.53917 -12.20478 -12.17969 -12.10865 -12.04734 -11.88309 -11.83458 -11.58587 -11.37311 -11.34629 -11.29430 -10.94553 -10.63307 -9.97346 -9.61873 -9.35739 -8.75508 -8.08370 -6.33389 0.38885 0.42739 1.38575 1.39998 1.47815 1.65585 2.39300 2.78419 3.16746 3.19927 3.80673 3.85104 3.96396 3.99708 4.13872 4.24326 4.25440 4.41370 4.51376 4.52097 4.56657 4.61096 4.68335 4.71613 4.80043 4.83626 4.88860 4.90715 4.93873 5.04098 5.10221 5.14307 5.19407 5.25718 5.43024 5.45404 5.50601 5.56287 5.58864 5.63221 5.70103 5.91947 6.02152 6.13257 6.44602 6.53997 6.80847 7.38497 7.63856 8.94955 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.004899 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.961522 B = 5714.129235 C = 7078.233296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.585 4.585 8 H 0.053 0.947 9 C 0.244 3.756 10 H 0.033 0.967 11 O -0.570 6.570 12 C 0.054 3.946 13 N -0.517 5.517 14 C 0.084 3.916 15 C -0.073 4.073 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.133 4.133 20 C -0.038 4.038 21 Cl -0.067 7.067 22 C 0.075 3.925 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.151 4.151 27 H 0.258 0.742 28 H 0.344 0.656 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -21.507 1.370 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.624 4.624 8 H 0.071 0.929 9 C 0.187 3.813 10 H 0.050 0.950 11 O -0.373 6.373 12 C -0.074 4.074 13 N -0.239 5.239 14 C -0.043 4.043 15 C -0.075 4.075 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.152 4.152 20 C -0.065 4.065 21 Cl -0.038 7.038 22 C -0.033 4.033 23 C -0.164 4.164 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.191 4.191 27 H 0.067 0.933 28 H 0.188 0.812 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.095 -21.146 2.198 21.484 hybrid contribution 1.187 1.798 -0.764 2.286 sum 4.282 -19.348 1.434 19.868 Atomic orbital electron populations 1.70225 1.07526 1.27021 1.48715 1.25810 0.95357 1.02503 0.93634 0.85746 0.78483 0.79148 0.78976 1.19215 1.21122 1.19619 1.22067 0.93261 0.93270 1.53788 0.92880 1.19173 0.87983 0.89377 0.84808 0.94961 1.86569 1.38607 1.96398 1.15724 1.22713 0.95811 0.90076 0.98775 1.62195 1.30914 1.01786 1.29019 1.21129 0.93664 0.93644 0.95883 1.19914 0.98130 0.94425 0.95031 1.21232 1.00144 0.91357 1.00185 1.21507 0.96411 1.01448 0.94032 1.21390 0.99254 0.92878 0.99599 1.21291 1.00128 0.95130 0.98635 1.21129 1.01489 0.85569 0.98272 1.98450 1.97127 1.10341 1.97849 1.22620 0.96097 0.97284 0.87312 1.22703 0.99574 0.95063 0.99086 1.22459 0.96705 1.00275 0.95900 1.22302 0.97211 0.94387 1.01082 1.22783 0.99173 0.98150 0.98972 0.93274 0.81189 0.92623 0.94958 0.90637 0.91540 0.83354 0.82520 0.82910 0.85287 0.90690 0.89220 0.93844 0.92098 0.89903 0.91021 0.90842 0.92606 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.22 12.84 21.45 0.28 -54.94 16 2 C 0.03 1.68 5.40 84.65 0.46 2.14 16 3 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.59 -32.87 8.77 25.60 0.22 -32.65 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.24 12.63 3.00 29.85 0.09 12.72 16 10 H 0.03 1.92 6.84 -2.39 -0.02 1.90 16 11 O -0.57 -29.83 10.06 -148.98 -1.50 -31.33 16 12 C 0.05 2.23 3.62 86.30 0.31 2.54 16 13 N -0.52 -18.06 2.21 -871.27 -1.93 -19.98 16 14 C 0.08 2.40 4.08 85.55 0.35 2.75 16 15 C -0.07 -1.95 4.09 -19.84 -0.08 -2.03 16 16 C -0.11 -2.16 8.27 22.27 0.18 -1.97 16 17 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 18 C -0.11 -2.10 10.05 22.26 0.22 -1.87 16 19 C -0.13 -3.34 9.83 22.29 0.22 -3.12 16 20 C -0.04 -1.14 6.22 22.32 0.14 -1.00 16 21 Cl -0.07 -2.56 24.27 -2.72 -0.07 -2.62 16 22 C 0.08 2.46 2.75 45.64 0.13 2.59 16 23 C -0.13 -3.46 6.02 31.69 0.19 -3.27 16 24 C -0.12 -2.44 6.91 31.91 0.22 -2.21 16 25 C -0.11 -2.30 6.44 31.67 0.20 -2.10 16 26 C -0.15 -4.15 4.89 31.32 0.15 -4.00 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.34 16.19 9.03 -74.05 -0.67 15.53 16 29 H 0.06 2.35 7.45 -2.39 -0.02 2.33 16 30 H 0.03 1.28 5.91 -2.39 -0.01 1.27 16 31 H 0.08 1.82 5.16 -2.39 -0.01 1.81 16 32 H 0.07 1.98 7.26 -2.39 -0.02 1.96 16 33 H 0.15 2.12 8.00 -2.91 -0.02 2.10 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.08 3.06 5.77 -2.39 -0.01 3.05 16 38 H 0.09 2.28 3.35 -2.38 -0.01 2.27 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.30 7.60 -2.39 -0.02 1.29 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.63 5.79 -2.39 -0.01 1.61 16 Total: -1.00 -67.68 353.71 2.38 -65.30 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.34 Total: 30.16 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.23 Total: -33.19 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.65 Total: -74.93 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.50 Total: -31.33 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.62 kcal Total: -67.68 2.38 -65.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929525834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.551 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds