Wall clock time and date at job start Tue Mar 31 2020 13:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47236 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47250 * 300.00156 * 3 2 1 6 6 H 1.48504 * 109.46972 * 60.00302 * 3 2 1 7 7 C 1.37875 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47085 * 300.00766 * 9 7 2 11 11 O 1.42904 * 109.46854 * 60.00026 * 9 7 2 12 12 C 1.53002 * 109.47349 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.47080 * 173.41480 * 12 9 7 14 14 C 1.47809 * 111.00148 * 61.21335 * 13 12 9 15 15 C 1.45861 * 112.91966 * 153.85818 * 14 13 12 16 16 C 1.54513 * 111.58375 * 61.33201 * 15 14 13 17 17 C 1.50462 * 108.85344 * 282.81093 * 16 15 14 18 18 C 1.54296 * 112.94520 * 92.21601 * 17 16 15 19 19 C 1.44276 * 111.00206 * 299.23862 * 13 12 9 20 20 H 1.08998 * 108.97965 * 98.66434 * 19 13 12 21 21 C 1.50705 * 108.97763 * 339.95818 * 19 13 12 22 22 C 1.38244 * 119.98435 * 301.22425 * 21 19 13 23 23 C 1.38209 * 120.01211 * 179.72990 * 22 21 19 24 24 C 1.38353 * 119.98586 * 0.54606 * 23 22 21 25 25 Cl 1.73604 * 120.01350 * 179.75184 * 24 23 22 26 26 C 1.38357 * 119.97367 * 359.72475 * 24 23 22 27 27 C 1.38207 * 119.98621 * 0.02562 * 26 24 23 28 28 H 0.97006 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99969 * 60.00472 * 11 9 7 30 30 H 1.09002 * 109.46858 * 53.41638 * 12 9 7 31 31 H 1.08994 * 109.47339 * 293.41218 * 12 9 7 32 32 H 1.09001 * 108.78532 * 32.97309 * 14 13 12 33 33 H 1.08999 * 108.79398 * 274.75107 * 14 13 12 34 34 H 1.08996 * 109.06244 * 300.78642 * 15 14 13 35 35 H 1.09002 * 108.99468 * 181.82820 * 15 14 13 36 36 H 1.09005 * 109.56999 * 163.00336 * 16 15 14 37 37 H 1.09003 * 109.68129 * 42.68671 * 16 15 14 38 38 H 1.09007 * 108.76786 * 213.07439 * 17 16 15 39 39 H 1.09000 * 108.77521 * 331.35317 * 17 16 15 40 40 H 1.08996 * 108.91522 * 78.96136 * 18 17 16 41 41 H 1.09000 * 108.91336 * 197.51637 * 18 17 16 42 42 H 1.08000 * 119.99049 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.00935 * 180.27422 * 23 22 21 44 44 H 1.07995 * 120.00737 * 180.02562 * 26 24 23 45 45 H 1.08004 * 119.99497 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2453 -3.6621 -0.0005 13 7 1.5177 -4.9283 0.1583 14 6 0.5755 -5.1419 -0.9604 15 6 0.2923 -6.5520 -1.2032 16 6 -0.3662 -7.2192 0.0250 17 6 0.6941 -7.4912 1.0573 18 6 0.8512 -6.3425 2.0755 19 6 0.7954 -4.9566 1.4069 20 1 -0.2465 -4.6969 1.2197 21 6 1.3921 -3.9360 2.3415 22 6 2.7266 -4.0180 2.6930 23 6 3.2759 -3.0791 3.5456 24 6 2.4871 -2.0636 4.0563 25 17 3.1747 -0.8876 5.1325 26 6 1.1503 -1.9853 3.7086 27 6 0.6034 -2.9218 2.8518 28 1 -0.4851 0.8401 0.0004 29 1 0.9208 -2.5291 -1.9984 30 1 2.9469 -3.5402 0.8247 31 1 2.7917 -3.6730 -0.9435 32 1 1.0011 -4.7082 -1.8654 33 1 -0.3597 -4.6296 -0.7346 34 1 1.2247 -7.0682 -1.4315 35 1 -0.3796 -6.6369 -2.0573 36 1 -0.8327 -8.1574 -0.2754 37 1 -1.1212 -6.5536 0.4436 38 1 0.4344 -8.4033 1.5949 39 1 1.6468 -7.6431 0.5501 40 1 0.0521 -6.4127 2.8134 41 1 1.8096 -6.4493 2.5835 42 1 3.3412 -4.8131 2.2974 43 1 4.3195 -3.1406 3.8167 44 1 0.5342 -1.1926 4.1066 45 1 -0.4403 -2.8611 2.5806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929666607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:51 Heat of formation + Delta-G solvation = -33.396716 kcal Electronic energy + Delta-G solvation = -27345.765169 eV Core-core repulsion = 23774.505799 eV Total energy + Delta-G solvation = -3571.259370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.82561 -39.29199 -37.49258 -37.34916 -35.01914 -34.25471 -33.73301 -32.08531 -30.69115 -30.31606 -27.61243 -25.81317 -25.25198 -24.24509 -22.62642 -22.41835 -21.13371 -19.98009 -19.01397 -18.02566 -17.11330 -16.87756 -16.65074 -16.55507 -16.18442 -15.56941 -15.30218 -15.14029 -15.05012 -14.45622 -14.43284 -14.25900 -14.12793 -14.04307 -13.38662 -13.21420 -13.01510 -12.88090 -12.84257 -12.72397 -12.43521 -12.30930 -12.10903 -11.96585 -11.72842 -11.64055 -11.57149 -11.36283 -11.25266 -11.06892 -10.89963 -10.63476 -10.40711 -9.68712 -9.29695 -8.80665 -8.05372 -6.27381 0.25850 0.45446 1.21608 1.31899 1.36816 1.44711 2.38825 2.70247 3.16857 3.20648 3.65642 3.89386 3.97199 4.01597 4.22316 4.27680 4.33107 4.39192 4.42873 4.48358 4.54524 4.63398 4.67799 4.73868 4.82044 4.89004 4.92910 5.03717 5.05302 5.20216 5.25259 5.27177 5.35436 5.36421 5.40745 5.48513 5.50488 5.53016 5.65095 5.67832 5.69059 5.88437 5.93849 6.09249 6.36565 6.40770 6.83031 7.40967 7.60498 8.95064 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.006431 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.035251 B = 4352.982004 C = 6258.084691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.043 3.957 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.562 4.562 8 H 0.044 0.956 9 C 0.185 3.815 10 H 0.069 0.931 11 O -0.577 6.577 12 C 0.020 3.980 13 N -0.504 5.504 14 C 0.070 3.930 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.096 4.096 19 C 0.130 3.870 20 H 0.029 0.971 21 C -0.076 4.076 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.038 4.038 25 Cl -0.081 7.081 26 C -0.114 4.114 27 C -0.092 4.092 28 H 0.255 0.745 29 H 0.346 0.654 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.122 0.878 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -13.469 5.196 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.160 4.160 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.601 4.601 8 H 0.063 0.937 9 C 0.127 3.873 10 H 0.087 0.913 11 O -0.381 6.381 12 C -0.107 4.107 13 N -0.226 5.226 14 C -0.058 4.058 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.134 4.134 19 C 0.021 3.979 20 H 0.047 0.953 21 C -0.076 4.076 22 C -0.105 4.105 23 C -0.134 4.134 24 C -0.065 4.065 25 Cl -0.052 7.052 26 C -0.133 4.133 27 C -0.111 4.111 28 H 0.064 0.936 29 H 0.190 0.810 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.140 0.860 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.063 -13.715 5.746 15.182 hybrid contribution 0.017 2.759 -0.464 2.798 sum 3.080 -10.956 5.281 12.547 Atomic orbital electron populations 1.70168 1.06929 1.26345 1.49467 1.25514 0.95107 1.01341 0.94025 0.86007 0.79678 0.81556 0.77429 1.19244 1.20868 1.20993 1.21893 0.92725 0.92983 1.52490 0.93750 1.20505 0.89566 0.91170 0.86017 0.91327 1.86591 1.39371 1.96217 1.15876 1.23213 0.97490 0.88292 1.01725 1.62159 1.26654 1.32560 1.01252 1.20878 0.94240 0.96835 0.93821 1.20650 1.00953 0.95035 0.98207 1.21348 0.97849 1.00374 0.95672 1.21160 0.99464 0.96933 0.96400 1.21972 1.02256 0.91724 0.97481 1.20430 0.94569 0.94143 0.88750 0.95342 1.20117 0.94753 0.95981 0.96792 1.20955 0.94248 0.99218 0.96101 1.21155 1.00508 0.93843 0.97923 1.20895 0.93805 0.93789 0.98018 1.98325 1.84876 1.58334 1.63650 1.20902 0.94078 0.99256 0.99022 1.20801 0.99791 0.94463 0.96073 0.93595 0.81012 0.89302 0.92485 0.92680 0.96096 0.91082 0.91422 0.90548 0.93729 0.91234 0.91642 0.91911 0.91034 0.83154 0.83171 0.86047 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.79 12.84 21.45 0.28 -51.52 16 2 C 0.04 2.34 5.40 84.65 0.46 2.80 16 3 Si 0.93 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.56 -29.79 8.76 25.60 0.22 -29.56 16 8 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 9 C 0.19 8.71 2.19 29.85 0.07 8.78 16 10 H 0.07 3.44 3.48 -2.39 -0.01 3.44 16 11 O -0.58 -28.19 9.63 -148.98 -1.43 -29.63 16 12 C 0.02 0.79 4.44 86.30 0.38 1.17 16 13 N -0.50 -16.30 4.40 -890.73 -3.92 -20.22 16 14 C 0.07 2.24 3.41 83.94 0.29 2.52 16 15 C -0.11 -2.73 5.53 28.92 0.16 -2.57 16 16 C -0.11 -2.55 5.59 30.29 0.17 -2.38 16 17 C -0.10 -2.13 5.42 30.21 0.16 -1.97 16 18 C -0.10 -2.32 5.50 31.36 0.17 -2.15 16 19 C 0.13 4.09 1.31 44.99 0.06 4.15 16 20 H 0.03 1.04 6.21 -2.39 -0.01 1.03 16 21 C -0.08 -2.54 2.70 -19.86 -0.05 -2.59 16 22 C -0.09 -2.60 6.09 22.26 0.14 -2.46 16 23 C -0.12 -3.48 9.83 22.29 0.22 -3.26 16 24 C -0.04 -1.30 6.32 22.33 0.14 -1.16 16 25 Cl -0.08 -2.49 28.96 -2.72 -0.08 -2.57 16 26 C -0.11 -4.20 9.83 22.29 0.22 -3.98 16 27 C -0.09 -3.47 7.23 22.26 0.16 -3.31 16 28 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 29 H 0.35 15.52 8.69 -74.06 -0.64 14.87 16 30 H 0.09 3.38 4.39 -2.39 -0.01 3.37 16 31 H 0.06 2.20 8.02 -2.39 -0.02 2.18 16 32 H 0.05 1.85 6.80 -2.39 -0.02 1.84 16 33 H 0.02 0.80 6.24 -2.39 -0.01 0.79 16 34 H 0.07 1.65 7.59 -2.39 -0.02 1.63 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.04 1.13 7.16 -2.39 -0.02 1.11 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.41 7.38 -2.39 -0.02 1.40 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.61 7.09 -2.39 -0.02 1.60 16 42 H 0.15 3.86 7.67 -2.91 -0.02 3.84 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.11 4.36 7.80 -2.91 -0.02 4.33 16 Total: -1.00 -60.24 349.47 0.19 -60.05 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.36 Total: 33.88 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 2.96 Total: -35.98 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -3.64 Total: -71.73 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.43 Total: -29.63 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.08 Total: -2.57 kcal Total: -60.24 0.19 -60.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929666607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.656 kcal (2) G-P(sol) polarization free energy of solvation -60.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds