Wall clock time and date at job start Tue Mar 31 2020 13:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48506 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47328 * 299.99884 * 3 2 1 6 6 H 1.48500 * 109.46998 * 60.00128 * 3 2 1 7 7 C 1.37882 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99840 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47185 * 300.00003 * 9 7 2 11 11 O 1.42895 * 109.47055 * 60.00002 * 9 7 2 12 12 C 1.52995 * 109.47017 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47038 * 173.91054 * 12 9 7 14 14 C 1.44274 * 111.00290 * 315.40850 * 13 12 9 15 15 C 1.54059 * 111.97985 * 219.31600 * 14 13 12 16 16 C 1.54430 * 112.37107 * 318.84674 * 15 14 13 17 17 C 1.50459 * 112.95994 * 318.48695 * 16 15 14 18 18 C 1.54513 * 108.96552 * 92.01400 * 17 16 15 19 19 C 1.45863 * 111.58399 * 282.76241 * 18 17 16 20 20 H 1.09007 * 108.79197 * 300.54524 * 19 18 17 21 21 C 1.50695 * 108.79112 * 182.21057 * 19 18 17 22 22 C 1.38237 * 119.98848 * 288.15006 * 21 19 18 23 23 C 1.38216 * 120.01571 * 179.72926 * 22 21 19 24 24 C 1.38353 * 119.98361 * 0.54195 * 23 22 21 25 25 Cl 1.73595 * 120.01278 * 179.75144 * 24 23 22 26 26 C 1.38349 * 119.97414 * 359.72964 * 24 23 22 27 27 C 1.38213 * 119.99001 * 359.97438 * 26 24 23 28 28 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 29 29 H 0.96705 * 114.00262 * 52.24906 * 11 9 7 30 30 H 1.09000 * 109.47454 * 53.90896 * 12 9 7 31 31 H 1.09001 * 109.47009 * 293.90947 * 12 9 7 32 32 H 1.09004 * 108.97538 * 339.95655 * 14 13 12 33 33 H 1.08999 * 108.97721 * 98.75244 * 14 13 12 34 34 H 1.09003 * 108.91946 * 79.63602 * 15 14 13 35 35 H 1.09000 * 108.92175 * 198.28432 * 15 14 13 36 36 H 1.09001 * 108.96754 * 197.47892 * 16 15 14 37 37 H 1.08997 * 108.65240 * 79.27246 * 16 15 14 38 38 H 1.09001 * 109.57360 * 332.13272 * 17 16 15 39 39 H 1.09004 * 109.57103 * 211.88894 * 17 16 15 40 40 H 1.08994 * 109.05220 * 43.30297 * 18 17 16 41 41 H 1.09003 * 109.05748 * 162.28977 * 18 17 16 42 42 H 1.08008 * 119.99365 * 359.97438 * 22 21 19 43 43 H 1.07997 * 120.00674 * 180.26942 * 23 22 21 44 44 H 1.08000 * 120.00994 * 180.02562 * 26 24 23 45 45 H 1.07996 * 119.99874 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 1 0.6247 -2.5572 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5166 -4.9292 0.1464 14 6 0.5071 -4.8293 1.1723 15 6 0.4148 -6.1140 2.0174 16 6 0.5254 -7.3922 1.1579 17 6 -0.2465 -7.3018 -0.1304 18 6 0.6882 -6.7689 -1.2394 19 6 0.8849 -5.3279 -1.1289 20 1 -0.0837 -4.8341 -1.2084 21 6 1.7581 -4.8683 -2.2678 22 6 3.1041 -5.1834 -2.2772 23 6 3.9044 -4.7670 -3.3243 24 6 3.3604 -4.0251 -4.3576 25 17 4.3663 -3.4962 -5.6699 26 6 2.0145 -3.7052 -4.3449 27 6 1.2139 -4.1274 -3.3004 28 1 -0.4850 0.8401 -0.0004 29 1 0.9033 -2.4111 -1.9937 30 1 2.9414 -3.5450 0.8299 31 1 2.7979 -3.6676 -0.9400 32 1 0.7482 -3.9912 1.8263 33 1 -0.4589 -4.6453 0.7022 34 1 1.2192 -6.1118 2.7530 35 1 -0.5416 -6.1252 2.5403 36 1 0.1506 -8.2392 1.7326 37 1 1.5760 -7.5664 0.9258 38 1 -1.0887 -6.6214 -0.0045 39 1 -0.6137 -8.2904 -0.4062 40 1 1.6544 -7.2671 -1.1603 41 1 0.2506 -6.9938 -2.2121 42 1 3.5296 -5.7585 -1.4680 43 1 4.9550 -5.0170 -3.3336 44 1 1.5892 -3.1265 -5.1515 45 1 0.1633 -3.8775 -3.2901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929666625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:56 Heat of formation + Delta-G solvation = -23.890484 kcal Electronic energy + Delta-G solvation = -27000.192133 eV Core-core repulsion = 23429.344984 eV Total energy + Delta-G solvation = -3570.847149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43025 -38.13840 -36.26424 -35.85974 -33.51569 -32.95579 -32.12274 -30.86828 -29.54023 -28.47066 -26.18739 -24.60486 -23.78750 -22.74942 -21.70431 -21.01936 -19.80851 -18.63098 -17.16126 -16.87788 -15.87144 -15.61648 -14.83945 -14.72902 -14.66089 -14.32314 -14.21501 -13.98064 -13.51250 -13.25386 -13.20310 -13.05545 -12.74921 -12.66414 -12.13010 -11.87225 -11.50434 -11.46814 -11.33088 -11.13710 -10.96763 -10.82863 -10.70432 -10.61905 -10.46001 -10.32862 -10.25369 -10.13777 -9.96619 -9.89969 -9.21230 -8.70859 -8.62656 -8.57658 -8.16466 -7.24939 -6.03388 -4.21205 1.38540 1.54440 2.31222 3.24317 3.33197 3.37028 3.85497 4.35620 4.49268 4.79596 5.04073 5.11335 5.17623 5.23337 5.25929 5.34705 5.54657 5.60247 5.63798 5.66777 5.75419 5.86550 5.92316 5.98900 6.03722 6.15780 6.21717 6.23433 6.25651 6.36374 6.42916 6.46523 6.48531 6.49969 6.53687 6.57683 6.67937 6.73490 6.87604 6.96810 7.06086 7.50993 7.69678 7.81324 7.90072 8.18528 8.82834 9.33192 9.54788 10.99453 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.007138 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.500323 B = 3921.607497 C = 6873.541713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.199 3.801 10 H 0.059 0.941 11 O -0.567 6.567 12 C 0.009 3.991 13 N -0.516 5.516 14 C 0.054 3.946 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.106 4.106 19 C 0.124 3.876 20 H 0.069 0.931 21 C -0.056 4.056 22 C -0.090 4.090 23 C -0.118 4.118 24 C -0.038 4.038 25 Cl -0.086 7.086 26 C -0.111 4.111 27 C -0.096 4.096 28 H 0.259 0.741 29 H 0.344 0.656 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -13.536 -4.768 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.607 4.607 8 H 0.073 0.927 9 C 0.140 3.860 10 H 0.076 0.924 11 O -0.372 6.372 12 C -0.118 4.118 13 N -0.239 5.239 14 C -0.075 4.075 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.151 4.151 18 C -0.144 4.144 19 C 0.017 3.983 20 H 0.087 0.913 21 C -0.056 4.056 22 C -0.108 4.108 23 C -0.137 4.137 24 C -0.065 4.065 25 Cl -0.057 7.057 26 C -0.130 4.130 27 C -0.114 4.114 28 H 0.069 0.931 29 H 0.190 0.810 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.385 -13.892 -4.273 14.729 hybrid contribution 0.539 2.077 -0.629 2.236 sum 2.925 -11.815 -4.902 13.122 Atomic orbital electron populations 1.70078 1.05844 1.26233 1.47476 1.25022 0.94673 0.99046 0.93881 0.86678 0.80401 0.84053 0.77675 1.19677 1.20905 1.20926 1.21679 0.93241 0.91557 1.54252 0.92683 1.20044 0.88701 0.90985 0.86233 0.92358 1.86498 1.41092 1.93465 1.16100 1.23402 0.97871 0.88268 1.02253 1.62006 1.25795 1.31938 1.04140 1.21881 0.94350 0.96570 0.94661 1.21999 1.00479 0.94563 0.97693 1.21187 1.00851 0.96718 0.95632 1.21305 0.98399 1.00207 0.95218 1.20663 0.99972 0.95559 0.98177 1.19572 0.96276 0.95249 0.87239 0.91305 1.20028 0.94299 0.96015 0.95278 1.20969 0.93208 0.99433 0.97205 1.20959 1.00291 0.99007 0.93413 1.20848 0.91884 1.02117 0.91604 1.98342 1.69481 1.89592 1.48315 1.21000 0.91726 1.00622 0.99620 1.21102 1.00620 0.96838 0.92879 0.93135 0.80959 0.91516 0.90325 0.91123 0.93806 0.92526 0.92907 0.93658 0.91766 0.92016 0.92593 0.91632 0.92254 0.84844 0.85528 0.85291 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 12.84 55.43 0.71 -24.10 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 3 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.57 -15.26 8.69 -34.43 -0.30 -15.55 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.20 4.73 2.42 -27.88 -0.07 4.66 16 10 H 0.06 1.54 5.85 -51.93 -0.30 1.24 16 11 O -0.57 -13.37 9.44 -35.23 -0.33 -13.70 16 12 C 0.01 0.18 4.59 -3.83 -0.02 0.16 16 13 N -0.52 -8.55 4.23 -232.88 -0.98 -9.53 16 14 C 0.05 0.92 3.92 -4.68 -0.02 0.90 16 15 C -0.11 -1.48 6.14 -25.43 -0.16 -1.64 16 16 C -0.11 -1.29 5.44 -27.25 -0.15 -1.44 16 17 C -0.11 -1.37 5.59 -27.21 -0.15 -1.52 16 18 C -0.11 -1.35 4.64 -29.31 -0.14 -1.49 16 19 C 0.12 1.89 1.10 -71.75 -0.08 1.82 16 20 H 0.07 1.22 5.86 -51.92 -0.30 0.91 16 21 C -0.06 -0.84 2.68 -104.62 -0.28 -1.12 16 22 C -0.09 -1.27 6.88 -39.59 -0.27 -1.55 16 23 C -0.12 -1.62 9.83 -39.55 -0.39 -2.01 16 24 C -0.04 -0.54 6.32 -39.50 -0.25 -0.79 16 25 Cl -0.09 -1.14 28.96 -51.86 -1.50 -2.64 16 26 C -0.11 -1.59 9.83 -39.55 -0.39 -1.98 16 27 C -0.10 -1.43 6.76 -39.59 -0.27 -1.70 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.34 7.85 6.13 45.56 0.28 8.13 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.53 4.27 -51.93 -0.22 1.31 16 32 H 0.07 1.34 6.10 -51.93 -0.32 1.02 16 33 H 0.04 0.80 6.50 -51.93 -0.34 0.46 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.82 7.39 -51.93 -0.38 0.43 16 38 H 0.06 0.81 7.15 -51.93 -0.37 0.43 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.83 7.32 -51.93 -0.38 0.45 16 41 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 42 H 0.13 1.81 8.04 -52.48 -0.42 1.39 16 43 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.14 2.03 7.53 -52.49 -0.40 1.63 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -27.88 349.70 -10.96 -38.83 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.08 Total: 10.90 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.02 Total: -21.15 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.27 Total: -33.64 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.33 Total: -13.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.88 -10.96 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929666625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.943 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds