Wall clock time and date at job start Tue Mar 31 2020 13:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48506 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47328 * 299.99884 * 3 2 1 6 6 H 1.48500 * 109.46998 * 60.00128 * 3 2 1 7 7 C 1.37882 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99840 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47185 * 300.00003 * 9 7 2 11 11 O 1.42895 * 109.47055 * 60.00002 * 9 7 2 12 12 C 1.52995 * 109.47017 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47038 * 173.91054 * 12 9 7 14 14 C 1.44274 * 111.00290 * 315.40850 * 13 12 9 15 15 C 1.54059 * 111.97985 * 219.31600 * 14 13 12 16 16 C 1.54430 * 112.37107 * 318.84674 * 15 14 13 17 17 C 1.50459 * 112.95994 * 318.48695 * 16 15 14 18 18 C 1.54513 * 108.96552 * 92.01400 * 17 16 15 19 19 C 1.45863 * 111.58399 * 282.76241 * 18 17 16 20 20 H 1.09007 * 108.79197 * 300.54524 * 19 18 17 21 21 C 1.50695 * 108.79112 * 182.21057 * 19 18 17 22 22 C 1.38237 * 119.98848 * 288.15006 * 21 19 18 23 23 C 1.38216 * 120.01571 * 179.72926 * 22 21 19 24 24 C 1.38353 * 119.98361 * 0.54195 * 23 22 21 25 25 Cl 1.73595 * 120.01278 * 179.75144 * 24 23 22 26 26 C 1.38349 * 119.97414 * 359.72964 * 24 23 22 27 27 C 1.38213 * 119.99001 * 359.97438 * 26 24 23 28 28 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 29 29 H 0.96705 * 114.00262 * 52.24906 * 11 9 7 30 30 H 1.09000 * 109.47454 * 53.90896 * 12 9 7 31 31 H 1.09001 * 109.47009 * 293.90947 * 12 9 7 32 32 H 1.09004 * 108.97538 * 339.95655 * 14 13 12 33 33 H 1.08999 * 108.97721 * 98.75244 * 14 13 12 34 34 H 1.09003 * 108.91946 * 79.63602 * 15 14 13 35 35 H 1.09000 * 108.92175 * 198.28432 * 15 14 13 36 36 H 1.09001 * 108.96754 * 197.47892 * 16 15 14 37 37 H 1.08997 * 108.65240 * 79.27246 * 16 15 14 38 38 H 1.09001 * 109.57360 * 332.13272 * 17 16 15 39 39 H 1.09004 * 109.57103 * 211.88894 * 17 16 15 40 40 H 1.08994 * 109.05220 * 43.30297 * 18 17 16 41 41 H 1.09003 * 109.05748 * 162.28977 * 18 17 16 42 42 H 1.08008 * 119.99365 * 359.97438 * 22 21 19 43 43 H 1.07997 * 120.00674 * 180.26942 * 23 22 21 44 44 H 1.08000 * 120.00994 * 180.02562 * 26 24 23 45 45 H 1.07996 * 119.99874 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 1 0.6247 -2.5572 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5166 -4.9292 0.1464 14 6 0.5071 -4.8293 1.1723 15 6 0.4148 -6.1140 2.0174 16 6 0.5254 -7.3922 1.1579 17 6 -0.2465 -7.3018 -0.1304 18 6 0.6882 -6.7689 -1.2394 19 6 0.8849 -5.3279 -1.1289 20 1 -0.0837 -4.8341 -1.2084 21 6 1.7581 -4.8683 -2.2678 22 6 3.1041 -5.1834 -2.2772 23 6 3.9044 -4.7670 -3.3243 24 6 3.3604 -4.0251 -4.3576 25 17 4.3663 -3.4962 -5.6699 26 6 2.0145 -3.7052 -4.3449 27 6 1.2139 -4.1274 -3.3004 28 1 -0.4850 0.8401 -0.0004 29 1 0.9033 -2.4111 -1.9937 30 1 2.9414 -3.5450 0.8299 31 1 2.7979 -3.6676 -0.9400 32 1 0.7482 -3.9912 1.8263 33 1 -0.4589 -4.6453 0.7022 34 1 1.2192 -6.1118 2.7530 35 1 -0.5416 -6.1252 2.5403 36 1 0.1506 -8.2392 1.7326 37 1 1.5760 -7.5664 0.9258 38 1 -1.0887 -6.6214 -0.0045 39 1 -0.6137 -8.2904 -0.4062 40 1 1.6544 -7.2671 -1.1603 41 1 0.2506 -6.9938 -2.2121 42 1 3.5296 -5.7585 -1.4680 43 1 4.9550 -5.0170 -3.3336 44 1 1.5892 -3.1265 -5.1515 45 1 0.1633 -3.8775 -3.2901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929666625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:55 Heat of formation + Delta-G solvation = -39.276827 kcal Electronic energy + Delta-G solvation = -27000.859335 eV Core-core repulsion = 23429.344984 eV Total energy + Delta-G solvation = -3571.514351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70838 -39.33508 -37.54609 -37.34478 -34.91615 -34.24588 -34.12135 -32.01605 -30.72676 -30.11262 -27.79774 -25.79548 -25.45001 -23.91173 -22.97661 -22.52429 -20.94274 -19.98244 -19.13381 -18.04484 -17.19098 -16.87852 -16.71510 -16.14348 -16.05965 -15.92132 -15.45105 -15.22660 -14.97580 -14.61170 -14.39653 -14.30432 -14.14944 -14.07164 -13.43303 -13.15246 -13.05989 -12.90388 -12.81910 -12.69383 -12.47113 -12.38377 -12.15315 -11.92488 -11.71905 -11.67626 -11.56180 -11.37088 -11.23485 -11.10472 -10.96680 -10.66904 -10.50335 -9.84989 -9.35476 -8.85498 -8.12781 -6.38968 0.23670 0.41050 1.21132 1.34330 1.37310 1.47983 2.36086 2.69854 3.09995 3.15321 3.64363 3.92181 4.03229 4.05584 4.18498 4.23381 4.24576 4.35877 4.45236 4.47291 4.53015 4.58138 4.66301 4.70378 4.75857 4.85349 4.95694 5.01738 5.03859 5.09355 5.20210 5.30702 5.32018 5.33559 5.36898 5.41916 5.46746 5.51497 5.58934 5.65529 5.67343 5.75729 5.91430 6.01386 6.33305 6.38768 6.74173 7.32008 7.50805 8.88009 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.007138 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.500323 B = 3921.607497 C = 6873.541713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.582 4.582 8 H 0.053 0.947 9 C 0.203 3.797 10 H 0.026 0.974 11 O -0.569 6.569 12 C 0.025 3.975 13 N -0.501 5.501 14 C 0.059 3.941 15 C -0.103 4.103 16 C -0.102 4.102 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.131 3.869 20 H 0.040 0.960 21 C -0.066 4.066 22 C -0.092 4.092 23 C -0.115 4.115 24 C -0.046 4.046 25 Cl -0.076 7.076 26 C -0.115 4.115 27 C -0.106 4.106 28 H 0.260 0.740 29 H 0.348 0.652 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -14.833 -5.219 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.172 4.172 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.620 4.620 8 H 0.071 0.929 9 C 0.144 3.856 10 H 0.044 0.956 11 O -0.375 6.375 12 C -0.103 4.103 13 N -0.223 5.223 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.141 4.141 19 C 0.024 3.976 20 H 0.058 0.942 21 C -0.067 4.067 22 C -0.110 4.110 23 C -0.134 4.134 24 C -0.072 4.072 25 Cl -0.047 7.047 26 C -0.134 4.134 27 C -0.125 4.125 28 H 0.068 0.932 29 H 0.194 0.806 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.759 -15.203 -4.725 16.358 hybrid contribution 0.089 2.486 -0.522 2.542 sum 3.848 -12.717 -5.248 14.285 Atomic orbital electron populations 1.70199 1.07318 1.27025 1.48796 1.25776 0.95401 1.02397 0.93608 0.85677 0.79305 0.79981 0.77668 1.19022 1.20580 1.20568 1.22060 0.93342 0.93026 1.53621 0.92903 1.19901 0.88645 0.91853 0.85169 0.95592 1.86479 1.41296 1.93510 1.16181 1.23113 0.96864 0.88068 1.02246 1.62128 1.25700 1.29532 1.04933 1.21844 0.93093 0.97701 0.94387 1.21947 1.01208 0.93568 0.97434 1.21166 1.00948 0.96245 0.95593 1.21315 0.97655 1.01044 0.94946 1.20638 1.00791 0.93505 0.99140 1.19548 0.94735 0.96749 0.86579 0.94227 1.20064 0.94843 0.96568 0.95223 1.21066 0.92728 0.99528 0.97698 1.21203 1.01253 0.98169 0.92770 1.20987 0.91990 1.02157 0.92113 1.98345 1.69083 1.89492 1.47821 1.21147 0.91986 1.00556 0.99684 1.21095 1.00515 0.97400 0.93485 0.93150 0.80585 0.92229 0.89639 0.93976 0.96008 0.92048 0.92009 0.91425 0.91834 0.93540 0.90208 0.90693 0.91253 0.83915 0.83479 0.84241 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.83 12.84 21.45 0.28 -52.55 16 2 C 0.03 1.71 5.40 84.66 0.46 2.16 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.58 -31.70 8.69 25.60 0.22 -31.48 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.20 9.99 2.42 29.85 0.07 10.06 16 10 H 0.03 1.46 5.85 -2.39 -0.01 1.45 16 11 O -0.57 -27.82 9.44 -148.98 -1.41 -29.22 16 12 C 0.02 0.99 4.59 86.30 0.40 1.39 16 13 N -0.50 -16.65 4.23 -890.71 -3.77 -20.42 16 14 C 0.06 2.04 3.92 87.15 0.34 2.39 16 15 C -0.10 -2.72 6.14 31.44 0.19 -2.53 16 16 C -0.10 -2.24 5.44 30.26 0.16 -2.07 16 17 C -0.11 -2.49 5.59 30.29 0.17 -2.32 16 18 C -0.10 -2.48 4.64 28.92 0.13 -2.35 16 19 C 0.13 4.00 1.10 41.81 0.05 4.04 16 20 H 0.04 1.45 5.86 -2.38 -0.01 1.44 16 21 C -0.07 -1.96 2.68 -19.86 -0.05 -2.02 16 22 C -0.09 -2.46 6.88 22.26 0.15 -2.31 16 23 C -0.12 -2.94 9.83 22.29 0.22 -2.72 16 24 C -0.05 -1.24 6.32 22.32 0.14 -1.10 16 25 Cl -0.08 -1.88 28.96 -2.72 -0.08 -1.96 16 26 C -0.12 -3.21 9.83 22.29 0.22 -2.99 16 27 C -0.11 -3.18 6.76 22.27 0.15 -3.03 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.35 16.28 6.13 -74.05 -0.45 15.82 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.09 3.30 4.27 -2.39 -0.01 3.29 16 32 H 0.04 1.68 6.10 -2.38 -0.01 1.67 16 33 H 0.02 0.84 6.50 -2.39 -0.02 0.82 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.43 7.39 -2.39 -0.02 1.41 16 38 H 0.05 1.18 7.15 -2.39 -0.02 1.16 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.70 7.32 -2.39 -0.02 1.69 16 41 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 42 H 0.14 3.56 8.04 -2.91 -0.02 3.53 16 43 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 44 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.13 3.98 7.53 -2.91 -0.02 3.95 16 Total: -1.00 -60.05 349.70 0.62 -59.43 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.54 Total: 33.93 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.03 Total: -34.87 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -3.49 Total: -72.97 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.41 Total: -29.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -60.05 0.62 -59.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929666625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.156 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds