Wall clock time and date at job start Tue Mar 31 2020 13:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99699 * 2 1 4 4 H 1.48500 * 109.47077 * 270.00339 * 3 2 1 5 5 H 1.48503 * 109.47009 * 30.00595 * 3 2 1 6 6 H 1.48496 * 109.46940 * 150.00170 * 3 2 1 7 7 C 1.37874 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99978 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47188 * 299.99958 * 9 7 2 11 11 O 1.42897 * 109.46970 * 59.99974 * 9 7 2 12 12 C 1.53003 * 109.46882 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46772 * 180.02562 * 12 9 7 14 14 C 1.46899 * 110.99375 * 175.36101 * 13 12 9 15 15 H 1.08994 * 109.47626 * 327.61732 * 14 13 12 16 16 C 1.50705 * 109.46952 * 207.61296 * 14 13 12 17 17 C 1.38244 * 119.98715 * 326.69951 * 16 14 13 18 18 C 1.38211 * 120.01198 * 179.72279 * 17 16 14 19 19 C 1.38350 * 119.98676 * 0.54768 * 18 17 16 20 20 Cl 1.73596 * 120.01277 * 179.70319 * 19 18 17 21 21 C 1.38348 * 119.97445 * 359.72417 * 19 18 17 22 22 C 1.38213 * 119.98750 * 0.02562 * 21 19 18 23 23 C 1.53004 * 109.46922 * 87.61964 * 14 13 12 24 24 C 1.54888 * 110.60128 * 65.25900 * 23 14 13 25 25 C 1.54886 * 102.75126 * 156.67890 * 24 23 14 26 26 C 1.54272 * 104.19195 * 322.05343 * 25 24 23 27 27 C 1.53881 * 106.59861 * 23.61301 * 26 25 24 28 28 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 29 29 H 0.96703 * 114.00467 * 59.99951 * 11 9 7 30 30 H 1.08998 * 109.46911 * 59.99837 * 12 9 7 31 31 H 1.08999 * 109.47217 * 299.99992 * 12 9 7 32 32 H 1.00903 * 110.99908 * 51.41233 * 13 12 9 33 33 H 1.07999 * 119.99089 * 0.02562 * 17 16 14 34 34 H 1.08006 * 120.00247 * 180.27173 * 18 17 16 35 35 H 1.07999 * 120.01197 * 179.97438 * 21 19 18 36 36 H 1.07998 * 119.99954 * 180.02562 * 22 21 19 37 37 H 1.09003 * 110.43331 * 302.63756 * 23 14 13 38 38 H 1.09004 * 110.75430 * 274.99120 * 24 23 14 39 39 H 1.08996 * 110.75981 * 38.36064 * 24 23 14 40 40 H 1.08997 * 110.48872 * 203.38361 * 25 24 23 41 41 H 1.08996 * 110.48813 * 80.73239 * 25 24 23 42 42 H 1.08993 * 110.03247 * 264.32280 * 26 25 24 43 43 H 1.09003 * 110.06869 * 142.91875 * 26 25 24 44 44 H 1.08993 * 110.02942 * 240.71082 * 27 26 25 45 45 H 1.09002 * 110.03021 * 119.27881 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8911 11 8 3.9883 -0.5205 1.1656 12 6 4.0216 -2.6364 -0.0010 13 7 5.4906 -2.6363 -0.0009 14 6 6.0170 -4.0033 0.1101 15 1 5.3371 -4.6068 0.7112 16 6 7.3724 -3.9677 0.7680 17 6 8.2162 -2.8936 0.5544 18 6 9.4570 -2.8578 1.1621 19 6 9.8592 -3.9024 1.9752 20 17 11.4207 -3.8616 2.7326 21 6 9.0166 -4.9796 2.1841 22 6 7.7739 -5.0120 1.5800 23 6 6.1439 -4.6159 -1.2862 24 6 7.2045 -3.8557 -2.1206 25 6 7.6284 -4.9079 -3.1751 26 6 7.6371 -6.2404 -2.3976 27 6 6.6932 -6.0547 -1.1966 28 1 -0.4850 0.8401 0.0004 29 1 3.7033 -0.9242 1.9969 30 1 3.6579 -3.1504 -0.8907 31 1 3.6586 -3.1501 0.8892 32 1 5.8522 -2.0487 0.7354 33 1 7.9036 -2.0802 -0.0835 34 1 10.1143 -2.0165 0.9986 35 1 9.3301 -5.7956 2.8184 36 1 7.1159 -5.8526 1.7433 37 1 5.1798 -4.6066 -1.7949 38 1 6.7641 -2.9823 -2.6017 39 1 8.0524 -3.5688 -1.4986 40 1 8.6236 -4.6839 -3.5590 41 1 6.9041 -4.9458 -3.9888 42 1 8.6456 -6.4627 -2.0491 43 1 7.2761 -7.0477 -3.0349 44 1 7.2436 -6.1869 -0.2652 45 1 5.8736 -6.7713 -1.2515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930216318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:48 Heat of formation + Delta-G solvation = -45.335171 kcal Electronic energy + Delta-G solvation = -25575.028470 eV Core-core repulsion = 22003.251409 eV Total energy + Delta-G solvation = -3571.777061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33523 -38.05299 -36.76928 -36.53974 -34.63339 -32.26804 -31.50068 -31.21060 -29.00692 -28.60483 -28.00387 -25.03414 -23.58530 -22.72516 -21.59111 -20.49754 -20.25183 -19.33468 -17.31403 -17.17043 -16.12813 -15.83035 -15.65381 -14.97203 -14.92712 -14.81149 -14.22126 -13.93872 -13.80852 -13.72848 -13.68347 -13.25561 -13.06415 -12.85514 -12.52147 -11.80918 -11.74864 -11.58920 -11.51979 -11.38995 -11.21059 -11.00732 -10.96707 -10.86717 -10.86425 -10.64374 -10.48368 -10.39217 -10.15258 -9.95335 -9.11472 -9.05461 -8.69487 -8.63116 -8.31574 -8.01686 -6.14368 -4.26001 0.98828 1.14570 1.96318 3.39444 3.47292 3.48618 3.74421 4.31180 4.52784 4.57482 4.66774 4.70128 4.74832 4.79326 4.92591 5.19488 5.20259 5.23370 5.38827 5.48679 5.55260 5.57100 5.66599 5.70958 5.74035 5.80525 5.83178 5.87818 5.94362 6.01961 6.04152 6.06395 6.10013 6.15539 6.18872 6.35300 6.38690 6.44442 6.53883 6.66438 6.68452 7.22423 7.44606 7.60256 7.84221 8.26191 8.80368 8.98128 9.50303 10.96220 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003543 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.733625 B = 7900.634001 C = 9270.023870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.196 3.804 10 H 0.063 0.937 11 O -0.582 6.582 12 C 0.046 3.954 13 N -0.681 5.681 14 C 0.130 3.870 15 H 0.052 0.948 16 C -0.069 4.069 17 C -0.088 4.088 18 C -0.112 4.112 19 C -0.038 4.038 20 Cl -0.080 7.080 21 C -0.113 4.113 22 C -0.104 4.104 23 C -0.073 4.073 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.265 0.735 29 H 0.353 0.647 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.346 0.654 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.414 -11.932 0.985 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.139 1.139 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.138 3.862 10 H 0.081 0.919 11 O -0.388 6.388 12 C -0.083 4.083 13 N -0.314 5.314 14 C 0.020 3.980 15 H 0.070 0.930 16 C -0.070 4.070 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.065 4.065 20 Cl -0.052 7.052 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.092 4.092 24 C -0.151 4.151 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.168 4.168 28 H 0.074 0.926 29 H 0.198 0.802 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.717 -11.424 -0.077 23.658 hybrid contribution -0.224 0.125 1.292 1.317 sum 20.493 -11.299 1.215 23.433 Atomic orbital electron populations 1.69959 1.06831 1.27497 1.48765 1.25004 0.94613 1.00045 0.92465 0.86988 0.82940 0.81668 0.78399 1.21381 1.22399 1.13949 1.21484 0.89866 0.94771 1.54131 0.91124 1.19824 0.93419 0.87292 0.85652 0.91908 1.86697 1.77736 1.57884 1.16448 1.22668 0.84990 1.00620 1.00013 1.60619 1.09313 1.08079 1.53345 1.20496 0.90738 0.91781 0.94989 0.93045 1.20123 0.96652 0.94197 0.95986 1.21151 0.92381 0.98663 0.98428 1.21090 0.97285 0.97781 0.96937 1.20913 0.87920 0.97668 0.99986 1.98361 1.27271 1.98519 1.81001 1.20956 0.93850 0.97579 1.00804 1.20994 0.95792 0.98609 0.96860 1.21893 0.99569 0.93289 0.94481 1.22582 0.98329 0.97598 0.96542 1.22383 1.00769 0.95161 0.98204 1.22070 0.99257 0.97665 0.96805 1.22361 0.98819 0.96730 0.98855 0.92578 0.80151 0.91100 0.95776 0.83397 0.83721 0.85061 0.85252 0.85254 0.90223 0.90980 0.90999 0.92273 0.91942 0.92395 0.92405 0.91311 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 2 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16 3 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.22 -5.21 5.31 56.52 0.30 -4.91 16 7 C -0.56 -15.29 9.34 -34.44 -0.32 -15.61 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.20 4.35 2.58 -27.88 -0.07 4.27 16 10 H 0.06 1.48 7.57 -51.93 -0.39 1.09 16 11 O -0.58 -12.41 9.40 -35.23 -0.33 -12.74 16 12 C 0.05 0.84 5.20 -3.82 -0.02 0.82 16 13 N -0.68 -10.20 5.45 -107.95 -0.59 -10.79 16 14 C 0.13 1.63 2.16 -68.86 -0.15 1.48 16 15 H 0.05 0.67 7.61 -51.93 -0.40 0.28 16 16 C -0.07 -0.77 3.88 -104.62 -0.41 -1.18 16 17 C -0.09 -0.98 6.57 -39.59 -0.26 -1.24 16 18 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 16 19 C -0.04 -0.40 6.32 -39.50 -0.25 -0.65 16 20 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 21 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 22 C -0.10 -1.05 7.83 -39.59 -0.31 -1.36 16 23 C -0.07 -0.87 2.86 -88.96 -0.25 -1.13 16 24 C -0.11 -1.32 5.83 -24.74 -0.14 -1.46 16 25 C -0.13 -1.31 6.83 -25.07 -0.17 -1.49 16 26 C -0.12 -1.17 6.80 -25.61 -0.17 -1.34 16 27 C -0.13 -1.33 6.19 -25.61 -0.16 -1.49 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.35 6.71 9.04 45.56 0.41 7.13 16 30 H 0.07 1.33 7.74 -51.93 -0.40 0.93 16 31 H 0.02 0.44 7.94 -51.93 -0.41 0.03 16 32 H 0.35 5.29 6.84 -39.29 -0.27 5.03 16 33 H 0.15 1.67 7.07 -52.49 -0.37 1.30 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.12 7.64 -52.49 -0.40 0.72 16 37 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.83 4.78 -51.93 -0.25 0.58 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.68 4.88 -51.93 -0.25 0.42 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -29.25 361.89 -10.52 -39.77 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.17 Total: 11.02 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.57 Total: -21.18 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.19 Total: -37.06 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.33 Total: -12.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.25 -10.52 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930216318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.569 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds