Wall clock time and date at job start Tue Mar 31 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99699 * 2 1 4 4 H 1.48500 * 109.47077 * 270.00339 * 3 2 1 5 5 H 1.48503 * 109.47009 * 30.00595 * 3 2 1 6 6 H 1.48496 * 109.46940 * 150.00170 * 3 2 1 7 7 C 1.37874 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99978 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47188 * 299.99958 * 9 7 2 11 11 O 1.42897 * 109.46970 * 59.99974 * 9 7 2 12 12 C 1.53003 * 109.46882 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46772 * 180.02562 * 12 9 7 14 14 C 1.46899 * 110.99375 * 175.36101 * 13 12 9 15 15 H 1.08994 * 109.47626 * 327.61732 * 14 13 12 16 16 C 1.50705 * 109.46952 * 207.61296 * 14 13 12 17 17 C 1.38244 * 119.98715 * 326.69951 * 16 14 13 18 18 C 1.38211 * 120.01198 * 179.72279 * 17 16 14 19 19 C 1.38350 * 119.98676 * 0.54768 * 18 17 16 20 20 Cl 1.73596 * 120.01277 * 179.70319 * 19 18 17 21 21 C 1.38348 * 119.97445 * 359.72417 * 19 18 17 22 22 C 1.38213 * 119.98750 * 0.02562 * 21 19 18 23 23 C 1.53004 * 109.46922 * 87.61964 * 14 13 12 24 24 C 1.54888 * 110.60128 * 65.25900 * 23 14 13 25 25 C 1.54886 * 102.75126 * 156.67890 * 24 23 14 26 26 C 1.54272 * 104.19195 * 322.05343 * 25 24 23 27 27 C 1.53881 * 106.59861 * 23.61301 * 26 25 24 28 28 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 29 29 H 0.96703 * 114.00467 * 59.99951 * 11 9 7 30 30 H 1.08998 * 109.46911 * 59.99837 * 12 9 7 31 31 H 1.08999 * 109.47217 * 299.99992 * 12 9 7 32 32 H 1.00903 * 110.99908 * 51.41233 * 13 12 9 33 33 H 1.07999 * 119.99089 * 0.02562 * 17 16 14 34 34 H 1.08006 * 120.00247 * 180.27173 * 18 17 16 35 35 H 1.07999 * 120.01197 * 179.97438 * 21 19 18 36 36 H 1.07998 * 119.99954 * 180.02562 * 22 21 19 37 37 H 1.09003 * 110.43331 * 302.63756 * 23 14 13 38 38 H 1.09004 * 110.75430 * 274.99120 * 24 23 14 39 39 H 1.08996 * 110.75981 * 38.36064 * 24 23 14 40 40 H 1.08997 * 110.48872 * 203.38361 * 25 24 23 41 41 H 1.08996 * 110.48813 * 80.73239 * 25 24 23 42 42 H 1.08993 * 110.03247 * 264.32280 * 26 25 24 43 43 H 1.09003 * 110.06869 * 142.91875 * 26 25 24 44 44 H 1.08993 * 110.02942 * 240.71082 * 27 26 25 45 45 H 1.09002 * 110.03021 * 119.27881 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8911 11 8 3.9883 -0.5205 1.1656 12 6 4.0216 -2.6364 -0.0010 13 7 5.4906 -2.6363 -0.0009 14 6 6.0170 -4.0033 0.1101 15 1 5.3371 -4.6068 0.7112 16 6 7.3724 -3.9677 0.7680 17 6 8.2162 -2.8936 0.5544 18 6 9.4570 -2.8578 1.1621 19 6 9.8592 -3.9024 1.9752 20 17 11.4207 -3.8616 2.7326 21 6 9.0166 -4.9796 2.1841 22 6 7.7739 -5.0120 1.5800 23 6 6.1439 -4.6159 -1.2862 24 6 7.2045 -3.8557 -2.1206 25 6 7.6284 -4.9079 -3.1751 26 6 7.6371 -6.2404 -2.3976 27 6 6.6932 -6.0547 -1.1966 28 1 -0.4850 0.8401 0.0004 29 1 3.7033 -0.9242 1.9969 30 1 3.6579 -3.1504 -0.8907 31 1 3.6586 -3.1501 0.8892 32 1 5.8522 -2.0487 0.7354 33 1 7.9036 -2.0802 -0.0835 34 1 10.1143 -2.0165 0.9986 35 1 9.3301 -5.7956 2.8184 36 1 7.1159 -5.8526 1.7433 37 1 5.1798 -4.6066 -1.7949 38 1 6.7641 -2.9823 -2.6017 39 1 8.0524 -3.5688 -1.4986 40 1 8.6236 -4.6839 -3.5590 41 1 6.9041 -4.9458 -3.9888 42 1 8.6456 -6.4627 -2.0491 43 1 7.2761 -7.0477 -3.0349 44 1 7.2436 -6.1869 -0.2652 45 1 5.8736 -6.7713 -1.2515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930216318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:47 Heat of formation + Delta-G solvation = -62.625617 kcal Electronic energy + Delta-G solvation = -25575.778240 eV Core-core repulsion = 22003.251409 eV Total energy + Delta-G solvation = -3572.526831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22828 -38.97516 -38.31241 -37.33933 -35.88551 -34.41352 -32.54679 -32.10840 -30.16135 -29.59173 -29.31147 -26.52684 -24.70233 -23.71214 -22.53403 -22.14611 -21.08691 -20.27929 -19.28779 -18.08842 -17.19010 -16.87068 -16.78126 -16.50333 -16.23641 -16.09477 -15.49349 -15.27074 -14.96415 -14.77115 -14.59779 -14.50415 -14.20268 -13.93358 -13.71270 -13.57766 -13.14801 -12.73296 -12.68075 -12.41557 -12.38743 -12.27548 -12.04574 -11.97261 -11.82325 -11.69374 -11.64323 -11.62640 -11.28789 -11.09966 -11.05275 -10.80770 -10.16884 -9.90105 -9.49104 -9.27128 -8.34685 -6.49388 0.16787 0.35956 1.18592 1.42100 1.47087 1.76594 2.44897 2.65969 3.03401 3.18268 3.64739 3.83939 3.88504 3.89660 4.00128 4.02792 4.10457 4.32053 4.41650 4.42957 4.49808 4.56512 4.64487 4.70021 4.74629 4.77395 4.85790 4.91250 4.98486 5.04930 5.08858 5.14667 5.17426 5.23626 5.29735 5.31332 5.42466 5.46548 5.54752 5.56255 5.59154 5.62231 5.85649 6.08048 6.18944 6.54430 6.66497 7.18569 7.34550 8.79542 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003543 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.733625 B = 7900.634001 C = 9270.023870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.035 0.965 9 C 0.206 3.794 10 H 0.055 0.945 11 O -0.580 6.580 12 C 0.063 3.937 13 N -0.676 5.676 14 C 0.134 3.866 15 H 0.049 0.951 16 C -0.075 4.075 17 C -0.094 4.094 18 C -0.115 4.115 19 C -0.045 4.045 20 Cl -0.076 7.076 21 C -0.111 4.111 22 C -0.103 4.103 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.266 0.734 29 H 0.366 0.634 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.347 0.653 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.998 -12.535 1.626 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.124 1.124 7 C -0.603 4.603 8 H 0.054 0.946 9 C 0.148 3.852 10 H 0.072 0.928 11 O -0.387 6.387 12 C -0.066 4.066 13 N -0.309 5.309 14 C 0.025 3.975 15 H 0.067 0.933 16 C -0.076 4.076 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.071 4.071 20 Cl -0.047 7.047 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.094 4.094 24 C -0.149 4.149 25 C -0.164 4.164 26 C -0.155 4.155 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.213 0.787 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.323 -12.047 0.571 26.256 hybrid contribution -1.017 0.235 1.117 1.529 sum 22.306 -11.812 1.688 25.297 Atomic orbital electron populations 1.70088 1.08578 1.28381 1.51023 1.25875 0.95242 1.03701 0.92404 0.85964 0.81983 0.77263 0.78282 1.21390 1.22711 1.12358 1.21843 0.92535 0.93211 1.52712 0.94647 1.19549 0.90296 0.89638 0.85748 0.92762 1.86616 1.77284 1.58043 1.16733 1.22277 0.87129 0.97700 0.99531 1.60534 1.06940 1.09911 1.53500 1.20465 0.91505 0.90016 0.95547 0.93289 1.19980 0.95846 0.95006 0.96759 1.21096 0.92803 0.98566 0.98753 1.21205 0.97149 0.98266 0.96785 1.21055 0.88268 0.97848 0.99944 1.98365 1.26946 1.98512 1.80870 1.21179 0.93445 0.97825 1.00545 1.21148 0.96164 0.98620 0.96198 1.21865 0.98806 0.94717 0.93973 1.22536 0.98170 0.97300 0.96854 1.22379 1.01117 0.95122 0.97805 1.22061 0.99516 0.97415 0.96520 1.22338 0.99100 0.95322 0.99598 0.92506 0.78688 0.92045 0.95950 0.83297 0.84444 0.84059 0.83408 0.83711 0.92247 0.92807 0.90664 0.91390 0.92283 0.91657 0.91582 0.90501 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.82 26.99 68.60 1.85 46.67 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.20 -9.04 5.31 99.48 0.53 -8.51 16 7 C -0.56 -31.09 9.34 25.60 0.24 -30.85 16 8 H 0.04 2.15 7.99 -2.91 -0.02 2.13 16 9 C 0.21 9.05 2.58 29.85 0.08 9.12 16 10 H 0.05 2.52 7.57 -2.39 -0.02 2.50 16 11 O -0.58 -23.69 9.40 -148.98 -1.40 -25.09 16 12 C 0.06 2.29 5.20 86.30 0.45 2.74 16 13 N -0.68 -19.73 5.45 -495.43 -2.70 -22.43 16 14 C 0.13 3.21 2.16 44.17 0.10 3.31 16 15 H 0.05 1.22 7.61 -2.39 -0.02 1.20 16 16 C -0.08 -1.55 3.88 -19.86 -0.08 -1.63 16 17 C -0.09 -1.94 6.57 22.26 0.15 -1.80 16 18 C -0.12 -2.19 9.83 22.29 0.22 -1.97 16 19 C -0.04 -0.82 6.32 22.32 0.14 -0.68 16 20 Cl -0.08 -1.32 28.96 -2.72 -0.08 -1.40 16 21 C -0.11 -1.87 9.83 22.29 0.22 -1.65 16 22 C -0.10 -1.80 7.83 22.26 0.17 -1.63 16 23 C -0.07 -1.72 2.86 -9.72 -0.03 -1.75 16 24 C -0.11 -2.50 5.83 31.88 0.19 -2.31 16 25 C -0.13 -2.43 6.83 31.67 0.22 -2.22 16 26 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 27 C -0.13 -2.35 6.19 31.32 0.19 -2.16 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.37 13.24 9.04 -74.05 -0.67 12.57 16 30 H 0.06 2.35 7.74 -2.39 -0.02 2.33 16 31 H 0.02 0.82 7.94 -2.39 -0.02 0.80 16 32 H 0.35 10.14 6.84 -89.69 -0.61 9.53 16 33 H 0.14 3.03 7.07 -2.91 -0.02 3.00 16 34 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.15 2.07 7.64 -2.91 -0.02 2.04 16 37 H 0.06 1.61 7.74 -2.39 -0.02 1.59 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 1.64 4.78 -2.39 -0.01 1.63 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.32 4.88 -2.39 -0.01 1.30 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -62.61 361.89 0.44 -62.17 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.46 Total: 31.33 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 2.93 Total: -33.26 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.40 Total: -80.41 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.40 Total: -25.09 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.85 Total: 46.67 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -62.61 0.44 -62.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930216318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds