Wall clock time and date at job start Tue Mar 31 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99525 * 2 1 4 4 H 1.48497 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47356 * 300.00190 * 3 2 1 6 6 H 1.48506 * 109.47010 * 60.00226 * 3 2 1 7 7 C 1.37877 * 120.00825 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99631 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47209 * 300.00391 * 9 7 2 11 11 O 1.42908 * 109.46901 * 60.00075 * 9 7 2 12 12 C 1.52993 * 109.47150 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47401 * 179.97438 * 12 9 7 14 14 C 1.46897 * 111.00000 * 174.88071 * 13 12 9 15 15 H 1.08997 * 109.47682 * 325.28620 * 14 13 12 16 16 C 1.50704 * 109.46956 * 85.28989 * 14 13 12 17 17 C 1.38242 * 119.98386 * 39.72093 * 16 14 13 18 18 C 1.38224 * 120.00922 * 179.72918 * 17 16 14 19 19 C 1.38356 * 119.98526 * 0.54779 * 18 17 16 20 20 Cl 1.73595 * 120.01210 * 179.74829 * 19 18 17 21 21 C 1.38353 * 119.96972 * 359.72652 * 19 18 17 22 22 C 1.38213 * 119.99433 * 359.97438 * 21 19 18 23 23 C 1.53008 * 109.47078 * 205.28263 * 14 13 12 24 24 C 1.54266 * 110.03013 * 174.60852 * 23 14 13 25 25 C 1.54966 * 104.15937 * 217.13978 * 24 23 14 26 26 C 1.54886 * 102.77728 * 37.88776 * 25 24 23 27 27 C 1.53879 * 110.02863 * 57.39469 * 23 14 13 28 28 H 0.96996 * 120.00746 * 359.97438 * 1 2 3 29 29 H 0.96702 * 114.00152 * 60.00042 * 11 9 7 30 30 H 1.09001 * 109.46890 * 60.00245 * 12 9 7 31 31 H 1.09002 * 109.47592 * 299.99862 * 12 9 7 32 32 H 1.00898 * 111.00335 * 298.84120 * 13 12 9 33 33 H 1.07993 * 119.99678 * 0.02562 * 17 16 14 34 34 H 1.07995 * 120.00520 * 180.27434 * 18 17 16 35 35 H 1.08004 * 120.00304 * 179.97438 * 21 19 18 36 36 H 1.07999 * 119.99617 * 180.02562 * 22 21 19 37 37 H 1.08994 * 110.01819 * 296.00513 * 23 14 13 38 38 H 1.08993 * 110.48803 * 335.78643 * 24 23 14 39 39 H 1.08999 * 110.48289 * 98.43569 * 24 23 14 40 40 H 1.09003 * 110.71903 * 279.58075 * 25 24 23 41 41 H 1.08993 * 110.92330 * 156.30101 * 25 24 23 42 42 H 1.09000 * 110.48626 * 203.40454 * 26 25 24 43 43 H 1.09003 * 110.59659 * 80.82220 * 26 25 24 44 44 H 1.09002 * 110.03027 * 238.56668 * 27 23 14 45 45 H 1.09001 * 110.03323 * 359.95014 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7089 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1671 12 6 2.2455 -3.6619 -0.0018 13 7 1.5111 -4.9342 -0.0012 14 6 2.4309 -6.0730 -0.1248 15 1 3.2678 -5.7962 -0.7658 16 6 2.9469 -6.4522 1.2394 17 6 2.0966 -6.4341 2.3293 18 6 2.5679 -6.7872 3.5798 19 6 3.8937 -7.1479 3.7425 20 17 4.4880 -7.5852 5.3139 21 6 4.7454 -7.1603 2.6523 22 6 4.2715 -6.8130 1.4013 23 6 1.6899 -7.2627 -0.7386 24 6 2.6748 -8.4211 -0.9992 25 6 2.1847 -9.0429 -2.3313 26 6 1.7491 -7.8016 -3.1489 27 6 1.1012 -6.8690 -2.1047 28 1 -0.4851 0.8399 0.0004 29 1 0.9210 -2.5290 -1.9985 30 1 2.8728 -3.6045 0.8877 31 1 2.8715 -3.6038 -0.8923 32 1 0.9377 -5.0204 0.8245 33 1 1.0628 -6.1486 2.2028 34 1 1.9025 -6.7774 4.4303 35 1 5.7805 -7.4414 2.7788 36 1 4.9362 -6.8230 0.5502 37 1 0.8945 -7.5920 -0.0701 38 1 3.6907 -8.0412 -1.1067 39 1 2.6236 -9.1537 -0.1937 40 1 1.3385 -9.7078 -2.1582 41 1 2.9936 -9.5725 -2.8345 42 1 1.0230 -8.0829 -3.9117 43 1 2.6139 -7.3205 -3.6057 44 1 0.0201 -7.0082 -2.0995 45 1 1.3426 -5.8303 -2.3300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930216319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:51 Heat of formation + Delta-G solvation = -51.693311 kcal Electronic energy + Delta-G solvation = -25387.433160 eV Core-core repulsion = 21815.380390 eV Total energy + Delta-G solvation = -3572.052770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.07827 -38.11929 -36.63974 -36.21844 -34.45483 -32.07509 -31.32775 -30.96239 -29.14038 -28.46484 -27.47884 -24.77304 -23.67956 -22.76453 -21.17425 -20.63245 -20.44385 -19.23863 -17.46518 -16.91397 -16.05778 -15.53206 -15.38562 -15.20307 -14.64966 -14.57861 -14.06830 -13.96743 -13.65671 -13.56337 -13.47866 -13.16595 -13.05200 -12.54065 -12.19175 -11.99497 -11.71328 -11.34433 -11.29370 -11.04238 -11.03096 -10.92378 -10.91509 -10.87213 -10.77623 -10.66847 -10.62422 -10.49856 -10.19007 -10.03826 -9.13378 -9.00237 -8.62141 -8.57210 -8.11701 -7.78885 -5.99988 -4.18176 1.05752 1.20194 2.02065 3.26625 3.35079 3.38111 3.53701 4.33228 4.49072 4.58289 4.71136 4.74807 4.77823 4.92273 4.98433 5.22013 5.26797 5.28893 5.38283 5.54855 5.59897 5.66528 5.70721 5.71114 5.77356 5.83335 5.87875 5.96693 6.03659 6.11293 6.14608 6.17677 6.21165 6.28248 6.35070 6.41712 6.52974 6.57324 6.70663 6.72502 6.84870 7.53616 7.68797 7.84196 7.90848 8.21235 8.85946 9.47196 9.63449 11.04115 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.004085 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.961431 B = 6851.931066 C = 9424.515428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.050 0.950 11 O -0.554 6.554 12 C 0.035 3.965 13 N -0.666 5.666 14 C 0.128 3.872 15 H 0.083 0.917 16 C -0.093 4.093 17 C -0.104 4.104 18 C -0.105 4.105 19 C -0.041 4.041 20 Cl -0.080 7.080 21 C -0.110 4.110 22 C -0.102 4.102 23 C -0.071 4.071 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.107 4.107 28 H 0.259 0.741 29 H 0.342 0.658 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.336 0.664 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -18.995 1.707 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.068 0.932 11 O -0.355 6.355 12 C -0.094 4.094 13 N -0.295 5.295 14 C 0.017 3.983 15 H 0.101 0.899 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.068 4.068 20 Cl -0.051 7.051 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.090 4.090 24 C -0.156 4.156 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.145 4.145 28 H 0.069 0.931 29 H 0.185 0.815 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.167 -18.911 1.634 19.958 hybrid contribution 1.532 1.009 0.909 2.048 sum 7.699 -17.902 2.543 19.653 Atomic orbital electron populations 1.70082 1.05890 1.26257 1.47164 1.25009 0.94652 0.99028 0.93868 0.86655 0.80231 0.84016 0.77699 1.19772 1.20852 1.20917 1.21674 0.93135 0.91628 1.54701 0.92767 1.19255 0.87750 0.88721 0.86382 0.93221 1.86562 1.37704 1.96299 1.14950 1.22935 0.97406 0.89852 0.99187 1.60718 1.22200 1.00915 1.45708 1.20835 0.94984 0.91893 0.90549 0.89863 1.21019 0.93843 0.97102 0.97496 1.20971 1.00361 0.99293 0.91590 1.21018 0.93753 0.99369 0.98221 1.20884 0.94613 1.04862 0.86412 1.98358 1.88517 1.91605 1.26634 1.21013 0.99564 1.00668 0.91587 1.21017 0.95335 0.99106 0.96579 1.21697 0.96955 0.93041 0.97318 1.22427 0.98997 0.97150 0.97029 1.22490 1.00253 0.97446 0.96005 1.22415 1.00209 0.95992 0.97913 1.22032 0.99471 1.00532 0.92473 0.93077 0.81492 0.95999 0.92180 0.84435 0.84930 0.85065 0.85267 0.85346 0.91398 0.91779 0.92183 0.91882 0.92169 0.92212 0.92021 0.92168 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 12.84 55.43 0.71 -24.55 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.57 -15.53 8.76 -34.44 -0.30 -15.83 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.83 3.08 -27.89 -0.09 5.75 16 10 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 11 O -0.55 -14.01 12.59 -35.23 -0.44 -14.45 16 12 C 0.04 0.68 5.11 -3.83 -0.02 0.66 16 13 N -0.67 -10.72 5.29 -107.95 -0.57 -11.29 16 14 C 0.13 1.67 1.51 -68.86 -0.10 1.56 16 15 H 0.08 1.12 7.50 -51.93 -0.39 0.74 16 16 C -0.09 -1.15 4.35 -104.62 -0.45 -1.60 16 17 C -0.10 -1.28 9.12 -39.58 -0.36 -1.64 16 18 C -0.10 -1.24 9.83 -39.54 -0.39 -1.63 16 19 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 20 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 21 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 22 C -0.10 -1.15 9.24 -39.59 -0.37 -1.52 16 23 C -0.07 -0.83 2.67 -89.50 -0.24 -1.07 16 24 C -0.12 -1.18 5.67 -25.03 -0.14 -1.32 16 25 C -0.12 -1.17 6.91 -24.70 -0.17 -1.34 16 26 C -0.13 -1.33 6.83 -25.08 -0.17 -1.50 16 27 C -0.11 -1.33 6.17 -25.61 -0.16 -1.48 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.34 7.83 9.04 45.56 0.41 8.24 16 30 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 32 H 0.34 5.42 6.38 -39.29 -0.25 5.17 16 33 H 0.13 1.57 6.50 -52.49 -0.34 1.23 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.25 8.04 -52.49 -0.42 0.82 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.63 7.61 -51.93 -0.40 0.23 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.20 7.28 -51.93 -0.38 0.83 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -29.30 376.98 -11.21 -40.50 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.37 Total: 11.57 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.70 Total: -21.16 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.14 Total: -35.84 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.44 Total: -14.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.30 -11.21 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930216319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.190 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds