Wall clock time and date at job start Tue Mar 31 2020 14:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48499 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47244 * 299.99817 * 3 2 1 6 6 H 1.48503 * 109.47176 * 59.99954 * 3 2 1 7 7 C 1.37873 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46703 * 300.00337 * 9 7 2 11 11 O 1.42892 * 109.47210 * 60.00202 * 9 7 2 12 12 C 1.52998 * 109.47078 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.46952 * 179.97438 * 12 9 7 14 14 C 1.46903 * 110.99921 * 184.20766 * 13 12 9 15 15 H 1.09006 * 109.46894 * 2.78723 * 14 13 12 16 16 C 1.50694 * 109.47393 * 242.78417 * 14 13 12 17 17 C 1.38268 * 119.99339 * 320.23331 * 16 14 13 18 18 C 1.38220 * 120.02530 * 180.23199 * 17 16 14 19 19 C 1.38235 * 120.01278 * 359.78731 * 18 17 16 20 20 C 1.38331 * 119.98975 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 120.01378 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99492 * 140.00247 * 16 14 13 23 23 C 1.52997 * 109.46881 * 122.78232 * 14 13 12 24 24 C 1.54266 * 110.03408 * 301.55960 * 23 14 13 25 25 C 1.54893 * 104.19387 * 217.10348 * 24 23 14 26 26 C 1.54884 * 102.75024 * 37.94529 * 25 24 23 27 27 C 1.53878 * 110.03501 * 184.39115 * 23 14 13 28 28 H 0.96991 * 120.00099 * 0.02562 * 1 2 3 29 29 H 0.96695 * 114.00413 * 59.99797 * 11 9 7 30 30 H 1.08999 * 109.47415 * 59.99825 * 12 9 7 31 31 H 1.08998 * 109.47090 * 300.00030 * 12 9 7 32 32 H 1.00902 * 110.99889 * 60.26130 * 13 12 9 33 33 H 1.07993 * 119.99004 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.99602 * 179.77201 * 18 17 16 35 35 H 1.08006 * 120.00604 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.00405 * 0.02562 * 22 16 14 37 37 H 1.09003 * 110.01812 * 63.00515 * 23 14 13 38 38 H 1.08993 * 110.48673 * 335.77967 * 24 23 14 39 39 H 1.08998 * 110.48445 * 98.42980 * 24 23 14 40 40 H 1.09005 * 110.75674 * 279.62370 * 25 24 23 41 41 H 1.08996 * 110.75337 * 156.26095 * 25 24 23 42 42 H 1.08997 * 110.49007 * 203.37926 * 26 25 24 43 43 H 1.09000 * 110.60027 * 80.78957 * 26 25 24 44 44 H 1.08998 * 110.03700 * 238.57367 * 27 23 14 45 45 H 1.09005 * 110.02577 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5570 0.8897 11 8 0.4293 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0005 13 7 1.5111 -4.9342 0.0001 14 6 2.4325 -6.0739 0.1007 15 1 3.4540 -5.7074 0.2020 16 6 2.3230 -6.9196 -1.1417 17 6 1.0859 -7.1489 -1.7150 18 6 0.9842 -7.9284 -2.8519 19 6 2.1199 -8.4758 -3.4188 20 6 3.3585 -8.2427 -2.8485 21 17 4.7852 -8.9293 -3.5604 22 6 3.4597 -7.4620 -1.7106 23 6 2.0693 -6.9166 1.3250 24 6 2.1394 -6.0525 2.6010 25 6 2.7057 -7.0109 3.6780 26 6 3.7486 -7.8376 2.8857 27 6 3.0925 -8.0516 1.5060 28 1 -0.4850 0.8400 -0.0004 29 1 0.9210 -2.5291 -1.9983 30 1 2.8722 -3.6042 0.8894 31 1 2.8722 -3.6042 -0.8905 32 1 0.9253 -5.0139 -0.8176 33 1 0.1982 -6.7221 -1.2721 34 1 0.0172 -8.1102 -3.2972 35 1 2.0403 -9.0853 -4.3069 36 1 4.4263 -7.2802 -1.2645 37 1 1.0681 -7.3316 1.2086 38 1 2.8103 -5.2065 2.4525 39 1 1.1447 -5.7071 2.8828 40 1 1.9205 -7.6558 4.0727 41 1 3.1858 -6.4501 4.4800 42 1 3.9284 -8.7947 3.3751 43 1 4.6806 -7.2817 2.7828 44 1 2.5878 -9.0173 1.4783 45 1 3.8480 -8.0017 0.7218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930233065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:40 Heat of formation + Delta-G solvation = -53.731917 kcal Electronic energy + Delta-G solvation = -25434.590850 eV Core-core repulsion = 21862.449679 eV Total energy + Delta-G solvation = -3572.141171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08864 -38.11761 -36.64301 -36.31799 -34.47337 -32.12142 -31.52124 -30.76027 -29.12229 -28.45217 -27.61273 -24.91027 -23.54594 -22.73721 -21.27100 -20.59609 -20.38351 -19.21280 -17.30266 -16.96245 -15.90571 -15.63078 -15.48992 -15.14245 -14.91309 -14.57280 -14.25454 -13.90435 -13.71963 -13.55208 -13.42410 -13.16901 -12.90633 -12.52369 -12.26253 -11.89548 -11.60394 -11.45204 -11.20825 -11.18759 -11.06478 -11.00531 -10.92237 -10.84402 -10.72030 -10.71548 -10.52264 -10.48784 -10.26794 -10.08215 -9.06936 -8.95623 -8.75903 -8.57453 -8.17695 -7.81127 -6.00697 -4.18861 1.05450 1.14982 1.98174 3.26378 3.34844 3.37892 3.51632 4.34161 4.49582 4.52218 4.72573 4.78831 4.84755 4.98583 4.99125 5.18157 5.26666 5.31661 5.32443 5.52979 5.58799 5.68535 5.71615 5.75584 5.77579 5.88042 5.91387 5.98796 6.06111 6.08598 6.15296 6.20266 6.24229 6.30976 6.35729 6.41156 6.45679 6.58113 6.64143 6.70278 6.88333 7.51042 7.75689 7.82790 7.98526 8.22506 8.84812 9.37983 9.58391 11.03505 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.003649 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.005765 B = 7672.425822 C = 9072.287655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.234 3.766 10 H 0.064 0.936 11 O -0.565 6.565 12 C 0.036 3.964 13 N -0.675 5.675 14 C 0.129 3.871 15 H 0.070 0.930 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.033 4.033 21 Cl -0.079 7.079 22 C -0.106 4.106 23 C -0.069 4.069 24 C -0.103 4.103 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.123 4.123 28 H 0.259 0.741 29 H 0.340 0.660 30 H 0.065 0.935 31 H 0.016 0.984 32 H 0.345 0.655 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -19.517 -1.639 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.611 4.611 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.081 0.919 11 O -0.367 6.367 12 C -0.093 4.093 13 N -0.307 5.307 14 C 0.019 3.981 15 H 0.088 0.912 16 C -0.079 4.079 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.060 4.060 21 Cl -0.050 7.050 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.140 4.140 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.183 0.817 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.987 -19.470 -0.561 20.107 hybrid contribution 1.574 0.933 -1.438 2.327 sum 6.561 -18.538 -1.999 19.766 Atomic orbital electron populations 1.70088 1.05890 1.26266 1.47083 1.25016 0.94663 0.99051 0.93843 0.86648 0.80228 0.83979 0.77696 1.19761 1.20917 1.20854 1.21669 0.93144 0.91605 1.54695 0.92741 1.19401 0.88083 0.88737 0.86165 0.91852 1.86585 1.38515 1.96254 1.15297 1.22963 0.97275 0.89958 0.99074 1.60681 1.21789 1.00812 1.47442 1.20762 0.96882 0.90341 0.90164 0.91211 1.20522 0.92626 0.97752 0.96984 1.21207 0.97907 0.97679 0.95655 1.21118 0.98169 0.97042 0.95832 1.21018 0.90842 1.01245 1.00638 1.20891 0.87890 1.00466 0.96704 1.98362 1.39361 1.83794 1.83467 1.20957 0.99254 0.97569 0.94737 1.21724 0.98798 0.94224 0.94079 1.22218 1.01679 0.97244 0.92907 1.22551 0.98103 0.98074 0.97897 1.22344 0.98488 0.99564 0.95735 1.22260 0.98338 0.98371 0.97143 0.93072 0.81689 0.91646 0.96577 0.83431 0.84537 0.85037 0.85266 0.85250 0.91011 0.91471 0.91173 0.91935 0.91951 0.92322 0.91931 0.92234 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 12.84 55.43 0.71 -24.47 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.57 -15.50 8.76 -34.44 -0.30 -15.80 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.23 5.75 3.10 -27.88 -0.09 5.67 16 10 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 11 O -0.56 -14.00 12.15 -35.23 -0.43 -14.43 16 12 C 0.04 0.71 4.99 -3.83 -0.02 0.69 16 13 N -0.68 -11.14 5.88 -107.95 -0.64 -11.77 16 14 C 0.13 1.75 1.68 -68.87 -0.12 1.63 16 15 H 0.07 1.00 7.39 -51.93 -0.38 0.61 16 16 C -0.08 -0.96 4.41 -104.63 -0.46 -1.43 16 17 C -0.11 -1.26 8.74 -39.58 -0.35 -1.60 16 18 C -0.10 -1.07 10.05 -39.59 -0.40 -1.47 16 19 C -0.12 -1.24 9.83 -39.55 -0.39 -1.63 16 20 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 21 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.34 16 22 C -0.11 -1.26 8.30 -39.55 -0.33 -1.59 16 23 C -0.07 -0.86 2.68 -89.50 -0.24 -1.10 16 24 C -0.10 -1.36 5.95 -25.07 -0.15 -1.51 16 25 C -0.13 -1.41 6.91 -24.74 -0.17 -1.58 16 26 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 27 C -0.12 -1.33 6.07 -25.61 -0.16 -1.49 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.34 7.58 9.04 45.56 0.41 7.99 16 30 H 0.07 1.29 7.51 -51.93 -0.39 0.90 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.34 5.76 5.83 -39.29 -0.23 5.53 16 33 H 0.14 1.61 7.07 -52.49 -0.37 1.24 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 1.45 7.68 -52.48 -0.40 1.04 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.98 7.25 -51.93 -0.38 0.61 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.67 5.96 -51.93 -0.31 0.36 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -28.99 373.87 -11.16 -40.15 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.24 Total: 12.33 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -3.68 Total: -21.12 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.08 Total: -36.24 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.43 Total: -14.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.99 -11.16 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930233065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.582 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds