Wall clock time and date at job start Tue Mar 31 2020 14:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48499 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47244 * 299.99817 * 3 2 1 6 6 H 1.48503 * 109.47176 * 59.99954 * 3 2 1 7 7 C 1.37873 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46703 * 300.00337 * 9 7 2 11 11 O 1.42892 * 109.47210 * 60.00202 * 9 7 2 12 12 C 1.52998 * 109.47078 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.46952 * 179.97438 * 12 9 7 14 14 C 1.46903 * 110.99921 * 184.20766 * 13 12 9 15 15 H 1.09006 * 109.46894 * 2.78723 * 14 13 12 16 16 C 1.50694 * 109.47393 * 242.78417 * 14 13 12 17 17 C 1.38268 * 119.99339 * 320.23331 * 16 14 13 18 18 C 1.38220 * 120.02530 * 180.23199 * 17 16 14 19 19 C 1.38235 * 120.01278 * 359.78731 * 18 17 16 20 20 C 1.38331 * 119.98975 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 120.01378 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99492 * 140.00247 * 16 14 13 23 23 C 1.52997 * 109.46881 * 122.78232 * 14 13 12 24 24 C 1.54266 * 110.03408 * 301.55960 * 23 14 13 25 25 C 1.54893 * 104.19387 * 217.10348 * 24 23 14 26 26 C 1.54884 * 102.75024 * 37.94529 * 25 24 23 27 27 C 1.53878 * 110.03501 * 184.39115 * 23 14 13 28 28 H 0.96991 * 120.00099 * 0.02562 * 1 2 3 29 29 H 0.96695 * 114.00413 * 59.99797 * 11 9 7 30 30 H 1.08999 * 109.47415 * 59.99825 * 12 9 7 31 31 H 1.08998 * 109.47090 * 300.00030 * 12 9 7 32 32 H 1.00902 * 110.99889 * 60.26130 * 13 12 9 33 33 H 1.07993 * 119.99004 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.99602 * 179.77201 * 18 17 16 35 35 H 1.08006 * 120.00604 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.00405 * 0.02562 * 22 16 14 37 37 H 1.09003 * 110.01812 * 63.00515 * 23 14 13 38 38 H 1.08993 * 110.48673 * 335.77967 * 24 23 14 39 39 H 1.08998 * 110.48445 * 98.42980 * 24 23 14 40 40 H 1.09005 * 110.75674 * 279.62370 * 25 24 23 41 41 H 1.08996 * 110.75337 * 156.26095 * 25 24 23 42 42 H 1.08997 * 110.49007 * 203.37926 * 26 25 24 43 43 H 1.09000 * 110.60027 * 80.78957 * 26 25 24 44 44 H 1.08998 * 110.03700 * 238.57367 * 27 23 14 45 45 H 1.09005 * 110.02577 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5570 0.8897 11 8 0.4293 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0005 13 7 1.5111 -4.9342 0.0001 14 6 2.4325 -6.0739 0.1007 15 1 3.4540 -5.7074 0.2020 16 6 2.3230 -6.9196 -1.1417 17 6 1.0859 -7.1489 -1.7150 18 6 0.9842 -7.9284 -2.8519 19 6 2.1199 -8.4758 -3.4188 20 6 3.3585 -8.2427 -2.8485 21 17 4.7852 -8.9293 -3.5604 22 6 3.4597 -7.4620 -1.7106 23 6 2.0693 -6.9166 1.3250 24 6 2.1394 -6.0525 2.6010 25 6 2.7057 -7.0109 3.6780 26 6 3.7486 -7.8376 2.8857 27 6 3.0925 -8.0516 1.5060 28 1 -0.4850 0.8400 -0.0004 29 1 0.9210 -2.5291 -1.9983 30 1 2.8722 -3.6042 0.8894 31 1 2.8722 -3.6042 -0.8905 32 1 0.9253 -5.0139 -0.8176 33 1 0.1982 -6.7221 -1.2721 34 1 0.0172 -8.1102 -3.2972 35 1 2.0403 -9.0853 -4.3069 36 1 4.4263 -7.2802 -1.2645 37 1 1.0681 -7.3316 1.2086 38 1 2.8103 -5.2065 2.4525 39 1 1.1447 -5.7071 2.8828 40 1 1.9205 -7.6558 4.0727 41 1 3.1858 -6.4501 4.4800 42 1 3.9284 -8.7947 3.3751 43 1 4.6806 -7.2817 2.7828 44 1 2.5878 -9.0173 1.4783 45 1 3.8480 -8.0017 0.7218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930233065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:39 Heat of formation + Delta-G solvation = -70.369699 kcal Electronic energy + Delta-G solvation = -25435.312318 eV Core-core repulsion = 21862.449679 eV Total energy + Delta-G solvation = -3572.862639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.06894 -39.08985 -38.09726 -37.43529 -35.85319 -34.23487 -32.70137 -31.71853 -30.23244 -29.46070 -29.20202 -26.47203 -24.82417 -23.75185 -22.37341 -22.16809 -21.39069 -20.23265 -19.02626 -18.25669 -16.93092 -16.75079 -16.61854 -16.52631 -16.23135 -16.10396 -15.89790 -15.17915 -14.95527 -14.57957 -14.44233 -14.35560 -14.10396 -14.08393 -13.45878 -13.12622 -12.96957 -12.80528 -12.76299 -12.61721 -12.42479 -12.23597 -12.08599 -11.97993 -11.88831 -11.81347 -11.78709 -11.54848 -11.42343 -11.28129 -10.98884 -10.70632 -10.16278 -9.85464 -9.64561 -9.21325 -8.12833 -6.38351 0.16488 0.27663 1.12411 1.39211 1.40962 1.52508 2.38717 2.63241 3.12958 3.25919 3.52633 3.84686 3.86945 3.95440 3.98895 4.12525 4.25350 4.28461 4.32021 4.46403 4.48912 4.56959 4.63834 4.64459 4.73831 4.79108 4.84394 4.89596 4.95101 4.98008 5.10898 5.13595 5.17479 5.21989 5.31890 5.36677 5.46016 5.50933 5.52867 5.58869 5.63816 5.78124 5.82181 6.04730 6.24589 6.57291 6.75885 7.34394 7.55689 8.91738 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.003649 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.005765 B = 7672.425822 C = 9072.287655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.237 3.763 10 H 0.024 0.976 11 O -0.576 6.576 12 C 0.059 3.941 13 N -0.677 5.677 14 C 0.135 3.865 15 H 0.063 0.937 16 C -0.087 4.087 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.041 4.041 21 Cl -0.073 7.073 22 C -0.112 4.112 23 C -0.064 4.064 24 C -0.106 4.106 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.117 4.117 28 H 0.261 0.739 29 H 0.351 0.649 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.344 0.656 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -20.798 -2.334 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.625 4.625 8 H 0.075 0.925 9 C 0.179 3.821 10 H 0.042 0.958 11 O -0.379 6.379 12 C -0.070 4.070 13 N -0.310 5.310 14 C 0.025 3.975 15 H 0.081 0.919 16 C -0.088 4.088 17 C -0.135 4.135 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.067 4.067 21 Cl -0.044 7.044 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.155 4.155 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.165 -20.770 -1.258 21.702 hybrid contribution 1.180 1.272 -1.252 2.140 sum 7.345 -19.498 -2.510 20.986 Atomic orbital electron populations 1.70220 1.07575 1.27221 1.48460 1.25853 0.95439 1.02747 0.93409 0.85555 0.79139 0.79416 0.77719 1.18861 1.20472 1.20493 1.22059 0.93438 0.92885 1.54113 0.92514 1.19182 0.87934 0.90196 0.84785 0.95849 1.86519 1.39141 1.96362 1.15882 1.22498 0.95787 0.89840 0.98908 1.60604 1.22269 1.00563 1.47524 1.20697 0.95653 0.89523 0.91620 0.91884 1.20345 0.93303 0.98426 0.96746 1.21273 0.97471 0.98307 0.96452 1.21386 0.99381 0.95986 0.95025 1.21313 0.90337 1.00837 1.01014 1.21012 0.88568 1.00469 0.96660 1.98364 1.39116 1.83637 1.83282 1.20993 0.99153 0.97842 0.95117 1.21675 0.99213 0.94456 0.93018 1.22185 1.00283 0.97386 0.94499 1.22527 0.98556 0.97734 0.97338 1.22339 0.98007 1.00241 0.95183 1.22211 0.97856 0.97797 0.97650 0.93027 0.80430 0.91927 0.96458 0.83509 0.85037 0.82620 0.83147 0.84900 0.91479 0.93375 0.93029 0.91084 0.91570 0.90553 0.91933 0.91381 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.68 12.84 21.45 0.28 -53.40 16 2 C 0.03 1.57 5.40 84.65 0.46 2.03 16 3 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.59 -32.16 8.76 25.60 0.22 -31.93 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.24 12.01 3.10 29.85 0.09 12.10 16 10 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 11 O -0.58 -29.19 12.15 -148.98 -1.81 -31.00 16 12 C 0.06 2.38 4.99 86.30 0.43 2.81 16 13 N -0.68 -22.87 5.88 -495.46 -2.91 -25.78 16 14 C 0.13 3.67 1.68 44.17 0.07 3.74 16 15 H 0.06 1.80 7.39 -2.38 -0.02 1.78 16 16 C -0.09 -2.10 4.41 -19.87 -0.09 -2.19 16 17 C -0.12 -2.65 8.74 22.27 0.19 -2.45 16 18 C -0.10 -1.86 10.05 22.26 0.22 -1.64 16 19 C -0.12 -2.15 9.83 22.29 0.22 -1.93 16 20 C -0.04 -0.85 6.32 22.32 0.14 -0.71 16 21 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 22 C -0.11 -2.53 8.30 22.29 0.19 -2.34 16 23 C -0.06 -1.58 2.68 -10.07 -0.03 -1.61 16 24 C -0.11 -2.84 5.95 31.67 0.19 -2.65 16 25 C -0.12 -2.61 6.91 31.88 0.22 -2.39 16 26 C -0.12 -2.25 6.83 31.67 0.22 -2.03 16 27 C -0.12 -2.37 6.07 31.32 0.19 -2.18 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.35 15.84 9.04 -74.06 -0.67 15.17 16 30 H 0.06 2.53 7.51 -2.39 -0.02 2.51 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.34 11.70 5.83 -89.69 -0.52 11.18 16 33 H 0.13 3.08 7.07 -2.91 -0.02 3.06 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.13 2.83 7.68 -2.91 -0.02 2.81 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.46 7.25 -2.39 -0.02 1.44 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.29 5.96 -2.38 -0.01 1.27 16 Total: -1.00 -62.29 373.87 0.25 -62.05 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.20 Total: 37.64 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.94 Total: -33.39 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.64 Total: -79.18 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.81 Total: -31.00 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -62.29 0.25 -62.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930233065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.321 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds