Wall clock time and date at job start Tue Mar 31 2020 14:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47197 * 90.00298 * 3 2 1 5 5 H 1.48503 * 109.46878 * 210.00203 * 3 2 1 6 6 H 1.48501 * 109.47050 * 329.99991 * 3 2 1 7 7 C 1.37879 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00337 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.46842 * 299.99434 * 9 7 2 11 11 O 1.42902 * 109.47052 * 59.99272 * 9 7 2 12 12 C 1.52994 * 109.47124 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47237 * 179.97438 * 12 9 7 14 14 C 1.46898 * 111.00367 * 176.90694 * 13 12 9 15 15 H 1.08998 * 109.46879 * 33.26060 * 14 13 12 16 16 C 1.50695 * 109.47214 * 153.26328 * 14 13 12 17 17 C 1.38264 * 119.99464 * 211.65171 * 16 14 13 18 18 C 1.38217 * 120.02530 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.01806 * 359.97438 * 18 17 16 20 20 C 1.38330 * 119.98490 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.01354 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99493 * 31.38157 * 16 14 13 23 23 C 1.52997 * 109.46905 * 273.26516 * 14 13 12 24 24 C 1.54269 * 110.03595 * 297.30909 * 23 14 13 25 25 C 1.54884 * 104.19986 * 217.11002 * 24 23 14 26 26 C 1.54886 * 102.74809 * 37.94003 * 25 24 23 27 27 C 1.53872 * 110.03271 * 180.14621 * 23 14 13 28 28 H 0.97003 * 119.99358 * 359.97438 * 1 2 3 29 29 H 0.96692 * 113.99756 * 60.00483 * 11 9 7 30 30 H 1.08994 * 109.46882 * 299.99633 * 12 9 7 31 31 H 1.09003 * 109.47303 * 59.99851 * 12 9 7 32 32 H 1.00909 * 110.99627 * 52.95069 * 13 12 9 33 33 H 1.08003 * 119.98678 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.99182 * 180.02562 * 18 17 16 35 35 H 1.08002 * 120.01266 * 180.02562 * 19 18 17 36 36 H 1.08008 * 120.00562 * 0.02562 * 22 16 14 37 37 H 1.09002 * 110.01922 * 58.75784 * 23 14 13 38 38 H 1.09000 * 110.48314 * 335.78805 * 24 23 14 39 39 H 1.09000 * 110.48474 * 98.42247 * 24 23 14 40 40 H 1.09004 * 110.75299 * 279.62668 * 25 24 23 41 41 H 1.08995 * 110.91305 * 156.33333 * 25 24 23 42 42 H 1.09004 * 110.48552 * 203.38099 * 26 25 24 43 43 H 1.08998 * 110.59761 * 80.79688 * 26 25 24 44 44 H 1.09007 * 110.03537 * 238.57425 * 27 23 14 45 45 H 1.09002 * 110.03404 * 359.97438 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8752 -0.6798 -0.8896 11 8 3.9874 -0.5212 1.1674 12 6 4.0214 -2.6366 -0.0001 13 7 5.4905 -2.6367 -0.0001 14 6 6.0169 -4.0062 0.0738 15 1 5.3448 -4.6827 -0.4542 16 6 7.3815 -4.0548 -0.5638 17 6 7.8045 -5.2048 -1.2043 18 6 9.0558 -5.2500 -1.7897 19 6 9.8848 -4.1452 -1.7357 20 6 9.4617 -2.9940 -1.0959 21 17 10.5020 -1.6059 -1.0282 22 6 8.2076 -2.9482 -0.5130 23 6 6.1230 -4.4333 1.5390 24 6 7.1235 -3.5250 2.2833 25 6 7.8487 -4.4810 3.2626 26 6 7.9948 -5.7781 2.4288 27 6 6.6770 -5.8658 1.6317 28 1 -0.4849 0.8401 0.0004 29 1 3.7018 -0.9252 1.9981 30 1 3.6578 -3.1506 0.8896 31 1 3.6584 -3.1503 -0.8903 32 1 5.8521 -2.0692 0.7518 33 1 7.1570 -6.0682 -1.2471 34 1 9.3855 -6.1484 -2.2902 35 1 10.8623 -4.1805 -2.1935 36 1 7.8755 -2.0485 -0.0161 37 1 5.1438 -4.3802 2.0150 38 1 7.8338 -3.0857 1.5828 39 1 6.5955 -2.7452 2.8320 40 1 7.2411 -4.6586 4.1500 41 1 8.8267 -4.0868 3.5385 42 1 8.1027 -6.6426 3.0839 43 1 8.8460 -5.7050 1.7519 44 1 5.9671 -6.5078 2.1533 45 1 6.8699 -6.2569 0.6327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930233067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:43 Heat of formation + Delta-G solvation = -46.983641 kcal Electronic energy + Delta-G solvation = -25874.883328 eV Core-core repulsion = 22303.034785 eV Total energy + Delta-G solvation = -3571.848544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40672 -38.12566 -36.72034 -36.43323 -34.63826 -32.29050 -31.49166 -30.96798 -29.21780 -28.74607 -27.85541 -25.10773 -23.67287 -22.55162 -21.52481 -20.66592 -20.41678 -19.44063 -17.36207 -17.04803 -16.13900 -15.88265 -15.52149 -15.42514 -14.93560 -14.59802 -14.34820 -13.96317 -13.89341 -13.51429 -13.42197 -13.21352 -13.00418 -12.80567 -12.54919 -11.88714 -11.75528 -11.50951 -11.46335 -11.44875 -11.13580 -11.10446 -11.06749 -10.95953 -10.76490 -10.73742 -10.62648 -10.59582 -10.32792 -9.81901 -9.21305 -8.86476 -8.72032 -8.67403 -8.51351 -7.97660 -6.15326 -4.27607 1.10878 1.24892 2.09911 3.45591 3.48522 3.56864 3.62698 4.33240 4.49448 4.51232 4.60182 4.66382 4.75230 4.86459 4.98596 5.14790 5.22249 5.22822 5.29389 5.38965 5.40633 5.55034 5.59221 5.61516 5.63863 5.72767 5.81300 5.84528 5.90531 5.92809 6.01436 6.08128 6.12821 6.15943 6.21135 6.21802 6.26046 6.38316 6.49588 6.65241 6.73979 7.22208 7.45453 7.58913 7.82954 8.24312 8.78440 8.95230 9.48299 10.94971 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.003915 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.580746 B = 7150.378338 C = 8149.348642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.306 1.306 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.193 3.807 10 H 0.069 0.931 11 O -0.587 6.587 12 C 0.046 3.954 13 N -0.682 5.682 14 C 0.127 3.873 15 H 0.086 0.914 16 C -0.038 4.038 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.036 4.036 21 Cl -0.078 7.078 22 C -0.085 4.085 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.122 4.122 28 H 0.265 0.735 29 H 0.357 0.643 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.346 0.654 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.316 -12.641 1.793 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.122 4.122 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.234 1.234 7 C -0.600 4.600 8 H 0.090 0.910 9 C 0.135 3.865 10 H 0.086 0.914 11 O -0.393 6.393 12 C -0.082 4.082 13 N -0.314 5.314 14 C 0.017 3.983 15 H 0.105 0.895 16 C -0.039 4.039 17 C -0.133 4.133 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.062 4.062 21 Cl -0.049 7.049 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.171 4.171 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.203 0.797 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.166 0.834 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.550 -11.974 0.646 23.793 hybrid contribution -0.167 0.311 1.265 1.313 sum 20.383 -11.664 1.911 23.562 Atomic orbital electron populations 1.69961 1.06703 1.27520 1.48814 1.25022 0.94676 1.00038 0.92493 0.86218 0.79320 0.81501 0.78455 1.20545 1.19063 1.23429 1.21504 0.89819 0.94837 1.53867 0.90951 1.19992 0.93469 0.87427 0.85563 0.91361 1.86410 1.77408 1.58739 1.16700 1.22633 0.84909 1.00622 1.00085 1.60638 1.09391 1.08866 1.52464 1.20572 0.92062 0.92261 0.93453 0.89545 1.19760 0.95402 0.92618 0.96128 1.21094 0.96455 0.97797 0.97979 1.20986 0.94065 0.97988 0.99817 1.20953 1.00594 0.92118 1.00333 1.20936 0.93032 0.89230 1.03008 1.98366 1.66777 1.42391 1.97379 1.20905 0.91253 0.99426 0.98803 1.22414 0.99687 0.95374 0.96068 1.22661 0.98274 0.97797 0.98341 1.22429 1.00041 0.95528 0.97868 1.22300 0.97712 0.97513 0.98279 1.22266 0.96775 0.96236 1.00729 0.92511 0.79683 0.95597 0.91060 0.83399 0.85680 0.85488 0.85513 0.84460 0.90435 0.90280 0.91543 0.91812 0.91927 0.92229 0.91840 0.92135 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 3 Si 0.92 23.23 26.18 -169.99 -4.45 18.78 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 6 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.56 -15.33 9.34 -34.44 -0.32 -15.65 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.19 4.39 2.57 -27.88 -0.07 4.31 16 10 H 0.07 1.69 7.20 -51.92 -0.37 1.31 16 11 O -0.59 -12.70 10.32 -35.23 -0.36 -13.06 16 12 C 0.05 0.85 5.12 -3.83 -0.02 0.84 16 13 N -0.68 -10.66 5.44 -107.96 -0.59 -11.25 16 14 C 0.13 1.61 2.06 -68.87 -0.14 1.47 16 15 H 0.09 1.12 7.75 -51.93 -0.40 0.72 16 16 C -0.04 -0.45 4.21 -104.63 -0.44 -0.89 16 17 C -0.11 -1.17 8.23 -39.58 -0.33 -1.50 16 18 C -0.11 -1.03 10.04 -39.59 -0.40 -1.43 16 19 C -0.12 -1.24 9.83 -39.55 -0.39 -1.63 16 20 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 21 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 22 C -0.09 -1.08 7.03 -39.55 -0.28 -1.35 16 23 C -0.12 -1.31 2.85 -89.50 -0.26 -1.56 16 24 C -0.13 -1.48 4.98 -25.07 -0.12 -1.60 16 25 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 26 C -0.12 -1.11 6.83 -25.08 -0.17 -1.28 16 27 C -0.12 -1.18 5.99 -25.62 -0.15 -1.34 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.36 6.79 9.04 45.56 0.41 7.20 16 30 H 0.03 0.47 7.51 -51.93 -0.39 0.08 16 31 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 32 H 0.35 5.39 6.09 -39.29 -0.24 5.15 16 33 H 0.13 1.07 7.11 -52.48 -0.37 0.70 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.86 6.44 -52.48 -0.34 1.52 16 37 H 0.08 0.97 7.54 -51.93 -0.39 0.58 16 38 H 0.08 0.92 4.32 -51.93 -0.22 0.69 16 39 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.64 4.96 -51.93 -0.26 0.38 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -29.86 360.69 -10.27 -40.13 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.97 Total: 9.98 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.61 Total: -21.38 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.19 Total: -37.47 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.36 Total: -13.06 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.45 Total: 18.78 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.86 -10.27 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930233067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.856 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds