Wall clock time and date at job start Tue Mar 31 2020 14:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47197 * 90.00298 * 3 2 1 5 5 H 1.48503 * 109.46878 * 210.00203 * 3 2 1 6 6 H 1.48501 * 109.47050 * 329.99991 * 3 2 1 7 7 C 1.37879 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00337 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.46842 * 299.99434 * 9 7 2 11 11 O 1.42902 * 109.47052 * 59.99272 * 9 7 2 12 12 C 1.52994 * 109.47124 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47237 * 179.97438 * 12 9 7 14 14 C 1.46898 * 111.00367 * 176.90694 * 13 12 9 15 15 H 1.08998 * 109.46879 * 33.26060 * 14 13 12 16 16 C 1.50695 * 109.47214 * 153.26328 * 14 13 12 17 17 C 1.38264 * 119.99464 * 211.65171 * 16 14 13 18 18 C 1.38217 * 120.02530 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.01806 * 359.97438 * 18 17 16 20 20 C 1.38330 * 119.98490 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.01354 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99493 * 31.38157 * 16 14 13 23 23 C 1.52997 * 109.46905 * 273.26516 * 14 13 12 24 24 C 1.54269 * 110.03595 * 297.30909 * 23 14 13 25 25 C 1.54884 * 104.19986 * 217.11002 * 24 23 14 26 26 C 1.54886 * 102.74809 * 37.94003 * 25 24 23 27 27 C 1.53872 * 110.03271 * 180.14621 * 23 14 13 28 28 H 0.97003 * 119.99358 * 359.97438 * 1 2 3 29 29 H 0.96692 * 113.99756 * 60.00483 * 11 9 7 30 30 H 1.08994 * 109.46882 * 299.99633 * 12 9 7 31 31 H 1.09003 * 109.47303 * 59.99851 * 12 9 7 32 32 H 1.00909 * 110.99627 * 52.95069 * 13 12 9 33 33 H 1.08003 * 119.98678 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.99182 * 180.02562 * 18 17 16 35 35 H 1.08002 * 120.01266 * 180.02562 * 19 18 17 36 36 H 1.08008 * 120.00562 * 0.02562 * 22 16 14 37 37 H 1.09002 * 110.01922 * 58.75784 * 23 14 13 38 38 H 1.09000 * 110.48314 * 335.78805 * 24 23 14 39 39 H 1.09000 * 110.48474 * 98.42247 * 24 23 14 40 40 H 1.09004 * 110.75299 * 279.62668 * 25 24 23 41 41 H 1.08995 * 110.91305 * 156.33333 * 25 24 23 42 42 H 1.09004 * 110.48552 * 203.38099 * 26 25 24 43 43 H 1.08998 * 110.59761 * 80.79688 * 26 25 24 44 44 H 1.09007 * 110.03537 * 238.57425 * 27 23 14 45 45 H 1.09002 * 110.03404 * 359.97438 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8752 -0.6798 -0.8896 11 8 3.9874 -0.5212 1.1674 12 6 4.0214 -2.6366 -0.0001 13 7 5.4905 -2.6367 -0.0001 14 6 6.0169 -4.0062 0.0738 15 1 5.3448 -4.6827 -0.4542 16 6 7.3815 -4.0548 -0.5638 17 6 7.8045 -5.2048 -1.2043 18 6 9.0558 -5.2500 -1.7897 19 6 9.8848 -4.1452 -1.7357 20 6 9.4617 -2.9940 -1.0959 21 17 10.5020 -1.6059 -1.0282 22 6 8.2076 -2.9482 -0.5130 23 6 6.1230 -4.4333 1.5390 24 6 7.1235 -3.5250 2.2833 25 6 7.8487 -4.4810 3.2626 26 6 7.9948 -5.7781 2.4288 27 6 6.6770 -5.8658 1.6317 28 1 -0.4849 0.8401 0.0004 29 1 3.7018 -0.9252 1.9981 30 1 3.6578 -3.1506 0.8896 31 1 3.6584 -3.1503 -0.8903 32 1 5.8521 -2.0692 0.7518 33 1 7.1570 -6.0682 -1.2471 34 1 9.3855 -6.1484 -2.2902 35 1 10.8623 -4.1805 -2.1935 36 1 7.8755 -2.0485 -0.0161 37 1 5.1438 -4.3802 2.0150 38 1 7.8338 -3.0857 1.5828 39 1 6.5955 -2.7452 2.8320 40 1 7.2411 -4.6586 4.1500 41 1 8.8267 -4.0868 3.5385 42 1 8.1027 -6.6426 3.0839 43 1 8.8460 -5.7050 1.7519 44 1 5.9671 -6.5078 2.1533 45 1 6.8699 -6.2569 0.6327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930233067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:43 Heat of formation + Delta-G solvation = -65.187821 kcal Electronic energy + Delta-G solvation = -25875.672721 eV Core-core repulsion = 22303.034785 eV Total energy + Delta-G solvation = -3572.637936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31365 -39.05978 -38.29445 -37.29884 -35.88087 -34.45652 -32.61790 -31.79797 -30.44076 -29.61914 -29.21631 -26.52020 -24.91093 -23.51912 -22.47485 -22.19909 -21.33312 -20.34453 -19.36799 -18.06945 -17.05621 -16.93417 -16.74488 -16.60683 -16.37855 -16.07367 -15.72110 -15.21527 -14.84154 -14.78449 -14.60239 -14.41609 -14.03788 -13.89929 -13.80551 -13.50707 -13.24623 -12.79152 -12.70060 -12.44626 -12.34831 -12.28509 -12.03292 -11.92167 -11.88889 -11.82117 -11.78523 -11.63989 -11.39810 -11.23956 -11.15600 -10.88495 -10.42047 -9.69172 -9.56033 -9.22405 -8.37646 -6.52097 0.27760 0.42473 1.23663 1.41141 1.42677 1.58741 2.37257 2.73239 2.97123 3.22503 3.64946 3.72916 3.79660 3.94108 4.01100 4.04437 4.18633 4.33063 4.36632 4.39782 4.48188 4.50623 4.58703 4.61825 4.71478 4.76847 4.78793 4.87044 4.91658 5.05178 5.05454 5.08547 5.12357 5.25368 5.31151 5.33796 5.41068 5.43336 5.50379 5.50967 5.54085 5.64369 5.92869 6.05469 6.18403 6.50270 6.63180 7.13708 7.30271 8.76440 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.003915 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.580746 B = 7150.378338 C = 8149.348642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.304 1.304 7 C -0.562 4.562 8 H 0.042 0.958 9 C 0.202 3.798 10 H 0.052 0.948 11 O -0.586 6.586 12 C 0.064 3.936 13 N -0.685 5.685 14 C 0.130 3.870 15 H 0.085 0.915 16 C -0.047 4.047 17 C -0.115 4.115 18 C -0.102 4.102 19 C -0.121 4.121 20 C -0.048 4.048 21 Cl -0.084 7.084 22 C -0.100 4.100 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.119 4.119 28 H 0.268 0.732 29 H 0.371 0.629 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.346 0.654 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.584 -14.044 1.701 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.802 3.198 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.233 1.233 7 C -0.600 4.600 8 H 0.061 0.939 9 C 0.144 3.856 10 H 0.070 0.930 11 O -0.393 6.393 12 C -0.066 4.066 13 N -0.316 5.316 14 C 0.020 3.980 15 H 0.103 0.897 16 C -0.048 4.048 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.140 4.140 20 C -0.075 4.075 21 Cl -0.055 7.055 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.171 4.171 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.157 4.157 28 H 0.077 0.923 29 H 0.219 0.781 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.835 -13.391 0.567 26.478 hybrid contribution -0.853 0.674 1.288 1.685 sum 21.982 -12.718 1.854 25.463 Atomic orbital electron populations 1.70066 1.08190 1.28404 1.50907 1.25771 0.95232 1.03208 0.92549 0.85285 0.77961 0.77979 0.78535 1.19976 1.18978 1.23251 1.21838 0.92251 0.93459 1.52470 0.93950 1.19709 0.90622 0.89870 0.85408 0.93031 1.86335 1.77015 1.58921 1.17047 1.22242 0.86903 0.97510 0.99913 1.60558 1.07251 1.11064 1.52742 1.20580 0.92556 0.90284 0.94552 0.89694 1.19673 0.94725 0.93347 0.97096 1.21340 0.97189 0.97640 0.97162 1.21348 0.93236 0.98682 0.98770 1.21251 1.01539 0.91632 0.99574 1.21066 0.92871 0.89785 1.03745 1.98360 1.66795 1.42881 1.97445 1.20812 0.92057 0.99234 0.99766 1.22333 0.99144 0.96738 0.94902 1.22641 0.98168 0.97841 0.98496 1.22429 1.00071 0.95543 0.97679 1.22266 0.97237 0.97543 0.98214 1.22253 0.97068 0.94893 1.01465 0.92304 0.78114 0.95307 0.91751 0.83366 0.83803 0.82316 0.83693 0.86137 0.91840 0.90748 0.92569 0.91600 0.91521 0.90947 0.91961 0.91660 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 2 C 0.03 1.88 5.47 84.66 0.46 2.35 16 3 Si 0.97 48.09 26.18 68.60 1.80 49.89 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.95 6.54 99.48 0.65 -12.30 16 6 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 7 C -0.56 -31.11 9.34 25.60 0.24 -30.88 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 9 C 0.20 9.17 2.57 29.85 0.08 9.25 16 10 H 0.05 2.55 7.20 -2.38 -0.02 2.53 16 11 O -0.59 -24.88 10.32 -148.98 -1.54 -26.41 16 12 C 0.06 2.35 5.12 86.30 0.44 2.79 16 13 N -0.68 -21.16 5.44 -495.48 -2.70 -23.86 16 14 C 0.13 3.18 2.06 44.17 0.09 3.27 16 15 H 0.08 2.09 7.75 -2.39 -0.02 2.07 16 16 C -0.05 -1.06 4.21 -19.87 -0.08 -1.14 16 17 C -0.12 -2.02 8.23 22.27 0.18 -1.84 16 18 C -0.10 -1.55 10.04 22.26 0.22 -1.32 16 19 C -0.12 -2.15 9.83 22.29 0.22 -1.93 16 20 C -0.05 -1.08 6.32 22.32 0.14 -0.94 16 21 Cl -0.08 -1.88 28.96 -2.72 -0.08 -1.96 16 22 C -0.10 -2.44 7.03 22.29 0.16 -2.28 16 23 C -0.11 -2.40 2.85 -10.07 -0.03 -2.43 16 24 C -0.13 -2.88 4.98 31.67 0.16 -2.72 16 25 C -0.12 -2.15 6.91 31.88 0.22 -1.93 16 26 C -0.12 -1.85 6.83 31.67 0.22 -1.63 16 27 C -0.12 -2.05 5.99 31.32 0.19 -1.86 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.37 13.75 9.04 -74.06 -0.67 13.08 16 30 H 0.03 1.04 7.51 -2.39 -0.02 1.02 16 31 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 32 H 0.35 10.72 6.09 -89.69 -0.55 10.18 16 33 H 0.14 1.96 7.11 -2.91 -0.02 1.93 16 34 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.12 3.29 6.44 -2.91 -0.02 3.27 16 37 H 0.06 1.55 7.54 -2.39 -0.02 1.53 16 38 H 0.07 1.70 4.32 -2.39 -0.01 1.69 16 39 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 40 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.08 1.22 4.96 -2.39 -0.01 1.20 16 Total: -1.00 -64.15 360.69 0.43 -63.73 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.26 Total: 29.19 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 2.90 Total: -33.24 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.40 Total: -81.19 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.54 Total: -26.41 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.80 Total: 49.89 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -64.15 0.43 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930233067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.461 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds