Wall clock time and date at job start Tue Mar 31 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 119.95438 * 2 1 4 4 C 1.38875 * 121.05997 * 180.02562 * 3 2 1 5 5 C 1.38743 * 120.71955 * 0.02562 * 4 3 2 6 6 C 1.47438 * 120.33128 * 179.71053 * 5 4 3 7 7 O 1.21601 * 119.99790 * 235.03195 * 6 5 4 8 8 N 1.34771 * 120.00142 * 55.02360 * 6 5 4 9 9 C 1.46507 * 120.00199 * 185.56637 * 8 6 5 10 10 C 1.50702 * 109.47240 * 89.99726 * 9 8 6 11 11 H 1.07992 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99714 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00136 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99620 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47478 * 60.00187 * 14 12 10 16 16 H 1.48509 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46916 * 299.99324 * 14 12 10 18 18 C 1.46504 * 120.00221 * 5.56488 * 8 6 5 19 19 C 1.52990 * 109.47161 * 94.96407 * 18 8 6 20 20 C 1.47204 * 109.47332 * 179.97438 * 19 18 8 21 21 N 6.15676 * 117.96988 * 74.03262 * 2 1 3 22 22 C 1.41777 * 119.33801 * 359.97438 * 5 4 3 23 23 N 1.33347 * 121.04925 * 179.97438 * 22 5 4 24 24 C 1.31230 * 121.35511 * 180.02562 * 23 22 5 25 25 C 1.39233 * 121.69495 * 359.97438 * 24 23 22 26 26 C 1.36636 * 119.90698 * 359.96060 * 25 24 23 27 27 C 1.40438 * 119.95870 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47445 * 90.00258 * 1 2 3 29 29 H 1.09005 * 109.46989 * 209.99964 * 1 2 3 30 30 H 1.09003 * 109.47139 * 329.99425 * 1 2 3 31 31 H 1.08002 * 119.47207 * 359.97438 * 3 2 1 32 32 H 1.07992 * 119.63711 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47355 * 210.00463 * 9 8 6 34 34 H 1.09005 * 109.46459 * 330.00165 * 9 8 6 35 35 H 0.97003 * 119.99820 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46737 * 214.96983 * 18 8 6 37 37 H 1.09002 * 109.46790 * 334.96322 * 18 8 6 38 38 H 1.09000 * 109.47736 * 300.00703 * 19 18 8 39 39 H 1.09002 * 109.47338 * 60.00250 * 19 18 8 40 40 H 1.08001 * 119.15646 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.04755 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.92312 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5763 1.2082 -0.0005 5 6 4.3079 0.0293 -0.0016 6 6 5.7818 0.0678 -0.0086 7 8 6.4012 -0.5215 -0.8733 8 7 6.4424 0.7560 0.9433 9 6 7.8988 0.8965 0.8681 10 6 8.2441 2.1378 0.0864 11 1 7.4575 2.7601 -0.3139 12 6 9.5643 2.4790 -0.1176 13 7 10.5223 1.7214 0.3704 14 14 9.9923 4.0180 -1.0859 15 1 9.4155 5.2063 -0.4073 16 1 11.4686 4.1603 -1.1622 17 1 9.4333 3.9112 -2.4575 18 6 5.7043 1.3639 2.0533 19 6 5.7102 0.4124 3.2513 20 6 4.9691 1.0234 4.3668 21 7 4.3945 1.4958 5.2278 22 6 3.6241 -1.2126 -0.0016 23 7 4.2931 -2.3661 -0.0032 24 6 3.6663 -3.5191 -0.0037 25 6 2.2761 -3.5959 -0.0021 26 6 1.5305 -2.4509 0.0008 27 6 2.2083 -1.2167 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6384 2.1112 -0.0004 32 1 4.0921 2.1569 -0.0001 33 1 8.3087 0.9753 1.8750 34 1 8.3227 0.0241 0.3705 35 1 11.4511 1.9616 0.2271 36 1 6.1792 2.3042 2.3336 37 1 4.6762 1.5538 1.7451 38 1 5.2355 -0.5279 2.9709 39 1 6.7383 0.2225 3.5595 40 1 4.2436 -4.4318 -0.0053 41 1 1.7878 -4.5592 -0.0030 42 1 0.4513 -2.4914 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930478799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:22 Heat of formation + Delta-G solvation = 50.227559 kcal Electronic energy + Delta-G solvation = -26708.319145 eV Core-core repulsion = 23039.578501 eV Total energy + Delta-G solvation = -3668.740643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09998 -39.01723 -37.23035 -36.73431 -35.12219 -34.16198 -32.77854 -31.28265 -30.75920 -30.66804 -28.20453 -26.66904 -24.46114 -24.00299 -23.69995 -23.11507 -21.18163 -18.92339 -18.37746 -17.47498 -17.12687 -16.87162 -16.37388 -15.95232 -15.36825 -14.83696 -14.66065 -14.62318 -14.26620 -14.14475 -13.81243 -13.75651 -13.55673 -13.36972 -13.09938 -12.81798 -12.44214 -12.38894 -12.31581 -12.07502 -11.91522 -11.78755 -11.43692 -11.27769 -11.21335 -10.94721 -10.75045 -10.60276 -10.43682 -10.16925 -9.69980 -9.54080 -8.95712 -8.85150 -8.44205 -8.14841 -7.74874 -6.05477 -4.10484 0.18356 0.74546 1.78944 2.75285 2.78724 2.87295 3.31905 3.36833 3.38585 3.45909 3.69626 4.07307 4.18909 4.24413 4.42027 4.47423 4.62291 4.66468 4.70913 4.91514 4.97811 5.10776 5.14523 5.24509 5.28882 5.29289 5.30256 5.37494 5.51737 5.57257 5.68577 5.85416 5.88035 5.89487 5.93480 6.13125 6.21945 6.26374 6.41715 6.72757 7.00813 7.43559 7.48591 7.64109 7.90267 7.95841 8.20630 8.31070 8.87071 9.03701 9.54798 11.02483 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004041 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.047760 B = 6927.524152 C = 7466.170468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.093 4.093 6 C 0.562 3.438 7 O -0.508 6.508 8 N -0.592 5.592 9 C 0.246 3.754 10 C -0.530 4.530 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.110 3.890 19 C -0.049 4.049 20 C 0.220 3.780 21 N -0.448 5.448 22 C 0.160 3.840 23 N -0.451 5.451 24 C 0.131 3.869 25 C -0.177 4.177 26 C -0.061 4.061 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.461 -6.886 1.502 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.091 4.091 5 C -0.097 4.097 6 C 0.348 3.652 7 O -0.383 6.383 8 N -0.324 5.324 9 C 0.127 3.873 10 C -0.569 4.569 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.016 4.016 19 C -0.090 4.090 20 C -0.098 4.098 21 N -0.126 5.126 22 C 0.037 3.963 23 N -0.157 5.157 24 C -0.042 4.042 25 C -0.197 4.197 26 C -0.087 4.087 27 C -0.106 4.106 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.783 -6.376 2.325 20.915 hybrid contribution -0.346 0.614 -0.864 1.115 sum -20.129 -5.762 1.461 20.988 Atomic orbital electron populations 1.20872 0.90669 1.03201 1.02731 1.19769 0.96063 0.91981 0.97970 1.20714 0.93827 0.97903 1.01317 1.21417 0.93871 0.97826 0.95981 1.20147 0.95113 0.91752 1.02661 1.17727 0.85460 0.79384 0.82661 1.90793 1.68064 1.42777 1.36634 1.48102 1.10248 1.51854 1.22214 1.19359 0.71897 0.98218 0.97779 1.21384 0.92033 1.08715 1.34773 0.92422 1.24905 0.96195 0.97075 0.95696 1.69917 0.99918 1.38020 1.45257 0.86591 0.77243 0.83093 0.80689 1.20247 1.21200 1.20187 1.21497 0.98310 0.96091 0.85734 1.19855 1.00517 0.99589 0.89074 1.29205 0.93210 0.93321 0.94092 1.81257 1.10529 1.09470 1.11333 1.18563 0.88899 0.91761 0.97070 1.68121 1.39533 0.97563 1.10532 1.23076 0.91926 0.96163 0.93050 1.21907 0.95623 0.99460 1.02722 1.21465 1.00306 0.91339 0.95635 1.18621 0.93706 0.94265 1.03994 0.90632 0.91242 0.90895 0.85025 0.84113 0.94641 0.93294 0.92618 0.88883 0.90153 0.87782 0.86456 0.82353 0.84622 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.53 36.00 0.34 -0.45 16 2 C -0.06 -0.59 5.89 -104.48 -0.62 -1.21 16 3 C -0.12 -1.28 9.57 -40.03 -0.38 -1.67 16 4 C -0.07 -0.95 7.46 -39.16 -0.29 -1.24 16 5 C -0.09 -1.55 4.93 -104.61 -0.52 -2.06 16 6 C 0.56 11.70 6.79 -12.52 -0.08 11.62 16 7 O -0.51 -12.98 16.36 5.28 0.09 -12.90 16 8 N -0.59 -11.71 2.46 -176.32 -0.43 -12.14 16 9 C 0.25 6.02 5.23 -5.19 -0.03 5.99 16 10 C -0.53 -14.27 9.39 -34.44 -0.32 -14.60 16 11 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 14 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.11 1.64 5.18 -4.05 -0.02 1.62 16 19 C -0.05 -0.62 6.02 -29.52 -0.18 -0.80 16 20 C 0.22 2.99 15.44 -20.70 -0.32 2.67 16 21 N -0.45 -7.05 18.55 42.23 0.78 -6.26 16 22 C 0.16 2.52 6.60 -84.58 -0.56 1.96 16 23 N -0.45 -7.40 9.57 -10.76 -0.10 -7.50 16 24 C 0.13 1.56 11.15 -17.44 -0.19 1.37 16 25 C -0.18 -1.63 10.03 -39.79 -0.40 -2.03 16 26 C -0.06 -0.59 9.36 -39.19 -0.37 -0.95 16 27 C -0.10 -1.28 5.74 -106.82 -0.61 -1.90 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.39 6.42 -51.93 -0.33 0.06 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 1.78 7.54 -52.49 -0.40 1.38 16 33 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.08 1.06 4.42 -51.93 -0.23 0.83 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 0.87 6.42 -52.49 -0.34 0.54 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -35.30 365.95 -8.10 -43.40 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.02 Total: -1.38 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -4.65 Total: -0.02 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.98 Total: -50.88 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.30 -8.10 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.627 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds