Wall clock time and date at job start Tue Mar 31 2020 14:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36350 * 119.95438 * 2 1 4 4 C 1.38875 * 121.05997 * 180.02562 * 3 2 1 5 5 C 1.38743 * 120.71955 * 0.02562 * 4 3 2 6 6 C 1.47438 * 120.33128 * 179.71053 * 5 4 3 7 7 O 1.21601 * 119.99790 * 235.03195 * 6 5 4 8 8 N 1.34771 * 120.00142 * 55.02360 * 6 5 4 9 9 C 1.46507 * 120.00199 * 185.56637 * 8 6 5 10 10 C 1.50702 * 109.47240 * 89.99726 * 9 8 6 11 11 H 1.07992 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99714 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00136 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99620 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47478 * 60.00187 * 14 12 10 16 16 H 1.48509 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46916 * 299.99324 * 14 12 10 18 18 C 1.46504 * 120.00221 * 5.56488 * 8 6 5 19 19 C 1.52990 * 109.47161 * 94.96407 * 18 8 6 20 20 C 1.47204 * 109.47332 * 179.97438 * 19 18 8 21 21 N 6.15676 * 117.96988 * 74.03262 * 2 1 3 22 22 C 1.41777 * 119.33801 * 359.97438 * 5 4 3 23 23 N 1.33347 * 121.04925 * 179.97438 * 22 5 4 24 24 C 1.31230 * 121.35511 * 180.02562 * 23 22 5 25 25 C 1.39233 * 121.69495 * 359.97438 * 24 23 22 26 26 C 1.36636 * 119.90698 * 359.96060 * 25 24 23 27 27 C 1.40438 * 119.95870 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47445 * 90.00258 * 1 2 3 29 29 H 1.09005 * 109.46989 * 209.99964 * 1 2 3 30 30 H 1.09003 * 109.47139 * 329.99425 * 1 2 3 31 31 H 1.08002 * 119.47207 * 359.97438 * 3 2 1 32 32 H 1.07992 * 119.63711 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47355 * 210.00463 * 9 8 6 34 34 H 1.09005 * 109.46459 * 330.00165 * 9 8 6 35 35 H 0.97003 * 119.99820 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46737 * 214.96983 * 18 8 6 37 37 H 1.09002 * 109.46790 * 334.96322 * 18 8 6 38 38 H 1.09000 * 109.47736 * 300.00703 * 19 18 8 39 39 H 1.09002 * 109.47338 * 60.00250 * 19 18 8 40 40 H 1.08001 * 119.15646 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.04755 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.92312 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5763 1.2082 -0.0005 5 6 4.3079 0.0293 -0.0016 6 6 5.7818 0.0678 -0.0086 7 8 6.4012 -0.5215 -0.8733 8 7 6.4424 0.7560 0.9433 9 6 7.8988 0.8965 0.8681 10 6 8.2441 2.1378 0.0864 11 1 7.4575 2.7601 -0.3139 12 6 9.5643 2.4790 -0.1176 13 7 10.5223 1.7214 0.3704 14 14 9.9923 4.0180 -1.0859 15 1 9.4155 5.2063 -0.4073 16 1 11.4686 4.1603 -1.1622 17 1 9.4333 3.9112 -2.4575 18 6 5.7043 1.3639 2.0533 19 6 5.7102 0.4124 3.2513 20 6 4.9691 1.0234 4.3668 21 7 4.3945 1.4958 5.2278 22 6 3.6241 -1.2126 -0.0016 23 7 4.2931 -2.3661 -0.0032 24 6 3.6663 -3.5191 -0.0037 25 6 2.2761 -3.5959 -0.0021 26 6 1.5305 -2.4509 0.0008 27 6 2.2083 -1.2167 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6384 2.1112 -0.0004 32 1 4.0921 2.1569 -0.0001 33 1 8.3087 0.9753 1.8750 34 1 8.3227 0.0241 0.3705 35 1 11.4511 1.9616 0.2271 36 1 6.1792 2.3042 2.3336 37 1 4.6762 1.5538 1.7451 38 1 5.2355 -0.5279 2.9709 39 1 6.7383 0.2225 3.5595 40 1 4.2436 -4.4318 -0.0053 41 1 1.7878 -4.5592 -0.0030 42 1 0.4513 -2.4914 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930478799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:21 Heat of formation + Delta-G solvation = 28.427368 kcal Electronic energy + Delta-G solvation = -26709.264472 eV Core-core repulsion = 23039.578501 eV Total energy + Delta-G solvation = -3669.685971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07961 -40.45590 -38.16837 -38.00107 -36.68499 -35.23824 -34.65158 -32.21963 -32.13818 -31.55798 -29.64626 -27.98835 -25.52706 -25.26055 -24.91936 -24.46187 -22.34338 -20.23033 -19.31678 -18.72309 -18.38780 -18.11019 -17.99845 -17.41792 -16.66638 -16.22835 -15.86359 -15.74189 -15.44959 -15.30132 -14.98477 -14.91035 -14.41399 -14.29747 -14.15309 -14.02709 -13.86122 -13.69882 -13.57874 -13.30358 -13.04028 -12.98097 -12.78854 -12.70581 -12.54625 -12.32965 -12.16050 -12.14317 -11.86891 -11.70286 -11.33632 -10.81309 -10.58330 -10.22512 -9.75735 -9.53282 -9.05132 -8.17337 -6.30813 -0.71927 -0.14092 0.87430 1.40506 1.44115 1.50877 1.58012 1.72695 1.81510 2.07331 2.23970 2.45782 3.00471 3.11222 3.13839 3.36514 3.54803 3.79999 3.83072 3.92130 3.98923 4.00389 4.06159 4.13389 4.41242 4.46219 4.47881 4.58639 4.72296 4.79839 4.87610 4.90855 4.93621 5.03724 5.08260 5.14908 5.23849 5.26572 5.33364 5.47918 5.59392 5.63388 5.87162 5.89399 6.11682 6.49287 6.67965 6.78263 7.07701 7.31922 7.47878 8.89647 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.004041 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.047760 B = 6927.524152 C = 7466.170468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.136 4.136 6 C 0.562 3.438 7 O -0.575 6.575 8 N -0.593 5.593 9 C 0.262 3.738 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.962 3.038 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.279 1.279 18 C 0.109 3.891 19 C -0.035 4.035 20 C 0.245 3.755 21 N -0.476 5.476 22 C 0.138 3.862 23 N -0.517 5.517 24 C 0.124 3.876 25 C -0.172 4.172 26 C -0.051 4.051 27 C -0.121 4.121 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.036 0.964 34 H 0.001 0.999 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.747 -6.390 1.771 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.037 4.037 3 C -0.148 4.148 4 C -0.080 4.080 5 C -0.140 4.140 6 C 0.351 3.649 7 O -0.454 6.454 8 N -0.323 5.323 9 C 0.141 3.859 10 C -0.581 4.581 11 H 0.075 0.925 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.787 3.213 15 H -0.184 1.184 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.015 4.015 19 C -0.077 4.077 20 C -0.072 4.072 21 N -0.154 5.154 22 C 0.016 3.984 23 N -0.225 5.225 24 C -0.047 4.047 25 C -0.191 4.191 26 C -0.076 4.076 27 C -0.124 4.124 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.192 0.808 41 H 0.195 0.805 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -24.115 -5.860 2.639 24.956 hybrid contribution 0.870 0.325 -0.960 1.336 sum -23.244 -5.535 1.679 23.953 Atomic orbital electron populations 1.21021 0.87259 1.05001 1.04173 1.20303 0.98272 0.90918 0.94182 1.21032 0.92433 0.99764 1.01559 1.21549 0.95354 0.96580 0.94543 1.19786 0.92093 0.93892 1.08226 1.18436 0.87506 0.77699 0.81284 1.90725 1.70051 1.45531 1.39084 1.47976 1.08670 1.52045 1.23598 1.18826 0.74939 0.95438 0.96697 1.21699 0.92305 1.09243 1.34872 0.92488 1.25772 0.96140 1.00229 0.96647 1.70041 1.00238 1.39764 1.46547 0.85556 0.77121 0.79766 0.78906 1.18404 1.20674 1.20492 1.21675 0.98809 0.96102 0.84925 1.19683 1.00803 0.99234 0.87947 1.29015 0.92332 0.92413 0.93488 1.81285 1.11572 1.10342 1.12162 1.18715 0.90611 0.91110 0.97941 1.68055 1.41737 0.99076 1.13612 1.23589 0.93953 0.95567 0.91621 1.22286 0.94184 1.01470 1.01194 1.21977 1.02250 0.90008 0.93395 1.18928 0.92367 0.96530 1.04533 0.89054 0.89456 0.89211 0.81611 0.84089 0.94642 0.98135 0.92513 0.88901 0.87959 0.86969 0.86130 0.80846 0.80461 0.80176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.53 71.23 0.68 -0.26 16 2 C -0.04 -0.62 5.89 -19.77 -0.12 -0.73 16 3 C -0.13 -2.43 9.57 21.98 0.21 -2.22 16 4 C -0.06 -1.59 7.46 22.54 0.17 -1.42 16 5 C -0.14 -4.72 4.93 -19.86 -0.10 -4.82 16 6 C 0.56 25.16 6.79 86.67 0.59 25.75 16 7 O -0.57 -32.16 16.36 -4.04 -0.07 -32.22 16 8 N -0.59 -24.91 2.46 -830.01 -2.04 -26.95 16 9 C 0.26 13.70 5.23 85.63 0.45 14.15 16 10 C -0.54 -30.45 9.39 25.60 0.24 -30.21 16 11 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 12 C 0.01 0.64 5.46 84.65 0.46 1.11 16 13 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 14 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 C 0.11 3.33 5.18 86.38 0.45 3.78 16 19 C -0.04 -0.91 6.02 28.79 0.17 -0.73 16 20 C 0.24 6.46 15.44 89.42 1.38 7.84 16 21 N -0.48 -14.44 18.55 20.03 0.37 -14.07 16 22 C 0.14 4.44 6.60 40.61 0.27 4.71 16 23 N -0.52 -17.74 9.57 -187.96 -1.80 -19.54 16 24 C 0.12 2.93 11.15 85.02 0.95 3.88 16 25 C -0.17 -2.63 10.03 22.13 0.22 -2.40 16 26 C -0.05 -0.77 9.36 22.52 0.21 -0.56 16 27 C -0.12 -2.73 5.74 -21.29 -0.12 -2.85 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.43 6.42 -2.38 -0.02 0.41 16 30 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.14 3.55 7.54 -2.91 -0.02 3.53 16 33 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 34 H 0.00 0.03 7.35 -2.38 -0.02 0.01 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.09 2.83 8.11 -2.38 -0.02 2.81 16 37 H 0.10 2.68 4.42 -2.39 -0.01 2.67 16 38 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.12 3.07 8.14 -2.39 -0.02 3.06 16 40 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.18 1.14 6.42 -2.91 -0.02 1.12 16 Total: -1.00 -84.30 365.95 5.94 -78.35 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.06 Total: 8.03 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.11 Total: 15.01 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -3.18 Total: -115.60 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.07 Total: -32.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -84.30 5.94 -78.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.779 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds