Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47337 * 300.00682 * 11 10 9 13 13 C 1.53001 * 109.46903 * 60.00409 * 11 10 9 14 14 C 1.53000 * 109.47273 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46983 * 180.02562 * 14 11 10 16 16 H 1.07998 * 120.00145 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00161 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99703 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47140 * 60.00723 * 19 17 15 21 21 H 1.48510 * 109.46754 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47297 * 300.00159 * 19 17 15 23 23 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 24 24 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 25 25 Cl 1.73598 * 120.01730 * 0.04541 * 24 2 1 26 26 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 27 27 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 28 28 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 29 29 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 30 30 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 33 33 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 34 34 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 35 35 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 36 36 H 1.08993 * 109.47298 * 59.99049 * 12 11 10 37 37 H 1.09001 * 109.47411 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.46412 * 299.99812 * 12 11 10 39 39 H 1.08992 * 109.47503 * 59.99902 * 13 11 10 40 40 H 1.09000 * 109.47703 * 180.02562 * 13 11 10 41 41 H 1.09007 * 109.46685 * 300.00061 * 13 11 10 42 42 H 1.08992 * 109.47143 * 300.00104 * 14 11 10 43 43 H 1.08997 * 109.46799 * 60.00311 * 14 11 10 44 44 H 0.97003 * 120.00173 * 179.97438 * 18 17 15 45 45 H 1.07993 * 120.01193 * 179.74436 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.0951 -0.0090 3.0489 11 6 9.6251 -0.0129 3.0490 12 6 10.1320 -1.2610 2.3236 13 6 10.1384 1.2374 2.3320 14 6 10.1350 -0.0183 4.4915 15 6 11.6420 -0.0216 4.4916 16 1 12.1821 -0.0196 3.5563 17 6 12.3314 -0.0271 5.6856 18 7 11.6738 -0.0301 6.8246 19 14 14.1994 -0.0305 5.6857 20 1 14.6965 1.1838 4.9902 21 1 14.6943 -0.0371 7.0858 22 1 14.6923 -1.2413 4.9812 23 6 3.5826 -1.1971 -0.0049 24 6 2.1987 -1.1979 0.0005 25 17 1.3313 -2.7016 0.0000 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0007 30 1 4.1202 2.1327 0.0001 31 1 6.1423 0.8915 -0.5133 32 1 6.1435 -0.8884 -0.5132 33 1 8.2372 -0.0027 0.9305 34 1 7.7344 0.8804 3.5655 35 1 7.7291 -0.8995 3.5599 36 1 9.7687 -1.2567 1.2960 37 1 11.2220 -1.2636 2.3233 38 1 9.7663 -2.1517 2.8345 39 1 9.7773 2.1266 2.8486 40 1 11.2284 1.2345 2.3316 41 1 9.7750 1.2417 1.3042 42 1 9.7740 0.8711 5.0078 43 1 9.7694 -0.9088 5.0028 44 1 12.1587 -0.0344 7.6647 45 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935992522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = -50.602633 kcal Electronic energy + Delta-G solvation = -24256.750523 eV Core-core repulsion = 20684.745048 eV Total energy + Delta-G solvation = -3572.005475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22426 -39.16286 -37.16235 -36.63181 -33.98522 -33.61420 -32.11701 -30.97322 -30.06159 -27.18703 -26.56916 -26.54192 -25.12263 -23.07525 -22.86931 -21.35748 -20.18993 -18.36651 -16.84690 -16.70264 -16.33578 -16.28935 -15.58449 -15.19154 -15.08175 -14.52522 -14.39242 -14.03596 -13.74976 -13.67076 -13.22750 -12.99186 -12.83520 -12.77214 -12.60630 -12.32927 -12.07465 -11.91544 -11.82635 -11.55914 -11.43703 -11.16636 -11.02195 -10.94883 -10.88860 -10.65251 -10.42626 -10.28795 -9.89936 -9.84321 -9.21263 -9.03050 -8.95593 -8.74712 -8.70515 -8.37176 -6.01175 -4.02763 0.93255 1.04228 1.92930 2.78203 3.20411 3.30782 3.36421 3.37377 3.63368 4.33561 4.43842 4.48578 4.63479 4.83365 4.93667 5.01498 5.12512 5.24642 5.31182 5.34069 5.34675 5.45364 5.50075 5.60070 5.63354 5.72175 5.80796 5.96573 6.13781 6.15108 6.19536 6.25717 6.26969 6.36592 6.53850 6.58329 6.60164 6.73877 7.03627 7.04874 7.10341 7.61995 7.71602 7.74422 7.97174 8.37602 8.41785 9.01796 9.60326 11.10197 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.002075 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.519566 B =13488.898478 C =13697.821963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 C -0.108 4.108 4 C -0.096 4.096 5 C -0.054 4.054 6 C -0.105 4.105 7 C 0.507 3.493 8 O -0.536 6.536 9 N -0.722 5.722 10 C 0.129 3.871 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.092 4.092 24 C -0.035 4.035 25 Cl -0.072 7.072 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.261 0.739 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.397 0.492 -18.896 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.055 4.055 6 C -0.145 4.145 7 C 0.292 3.708 8 O -0.413 6.413 9 N -0.374 5.374 10 C 0.006 3.994 11 C -0.073 4.073 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.002 4.002 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.111 4.111 24 C -0.061 4.061 25 Cl -0.043 7.043 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.012 0.351 -18.010 26.191 hybrid contribution 1.408 -0.158 -0.115 1.422 sum -17.604 0.193 -18.125 25.268 Atomic orbital electron populations 1.20859 0.90413 1.03496 1.02709 1.19749 0.96666 0.91485 1.00182 1.20934 0.93999 0.97049 1.00627 1.21082 0.94193 0.97727 0.98412 1.19193 0.94103 0.92748 0.99434 1.20706 0.92458 1.05486 0.95801 1.20402 0.82695 0.76951 0.90764 1.90737 1.55293 1.49120 1.46149 1.46211 1.06372 1.74627 1.10192 1.21620 0.95162 1.01778 0.80864 1.20901 0.90703 0.95066 1.00600 1.21762 1.02338 0.97317 0.97026 1.21764 1.02329 0.97291 0.97046 1.19087 0.95920 0.97485 0.87664 1.21137 0.91340 1.50471 0.92078 0.92318 1.25021 0.98181 0.95548 0.95786 1.69955 1.35422 1.50696 0.97279 0.86702 0.86086 0.78505 0.76941 1.20329 1.21402 1.20330 1.20852 0.91900 0.98618 0.99695 1.20706 0.92223 0.86605 1.06585 1.98352 1.76853 1.32191 1.96945 0.90806 0.90866 0.91109 0.85124 0.85456 0.87732 0.87840 0.76666 0.91872 0.91865 0.95232 0.91429 0.93371 0.93380 0.91429 0.95242 0.96366 0.96358 0.92964 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.62 36.01 0.35 -0.54 16 2 C -0.08 -0.79 5.88 -104.59 -0.62 -1.41 16 3 C -0.11 -1.01 9.70 -39.59 -0.38 -1.39 16 4 C -0.10 -0.96 9.70 -39.58 -0.38 -1.35 16 5 C -0.05 -0.58 4.37 -104.63 -0.46 -1.04 16 6 C -0.10 -0.97 5.83 -29.03 -0.17 -1.14 16 7 C 0.51 7.00 7.82 -10.98 -0.09 6.91 16 8 O -0.54 -9.85 16.03 5.55 0.09 -9.76 16 9 N -0.72 -9.76 4.96 -60.29 -0.30 -10.06 16 10 C 0.13 2.22 4.56 -4.04 -0.02 2.20 16 11 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 14 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 15 C -0.51 -13.45 7.65 -34.44 -0.26 -13.71 16 16 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.09 -1.03 9.49 -39.55 -0.38 -1.40 16 24 C -0.03 -0.38 6.31 -39.50 -0.25 -0.63 16 25 Cl -0.07 -0.73 27.30 -51.86 -1.42 -2.15 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.57 6.90 -51.93 -0.36 0.21 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.40 4.37 6.16 -40.82 -0.25 4.12 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 37 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 41 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -31.77 378.94 -9.48 -41.25 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.93 Total: 0.98 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.35 Total: -16.43 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.44 Total: -35.64 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.77 -9.48 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935992522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.353 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds