Wall clock time and date at job start Tue Mar 31 2020 13:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99543 * 2 1 4 4 H 1.48497 * 109.47320 * 270.00027 * 3 2 1 5 5 H 1.48500 * 109.47413 * 30.00114 * 3 2 1 6 6 H 1.48502 * 109.47356 * 150.00213 * 3 2 1 7 7 C 1.38816 * 120.00820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 188.97340 * 7 2 1 9 9 N 1.36930 * 119.99548 * 8.96551 * 7 2 1 10 10 C 1.48156 * 127.83983 * 16.50658 * 9 7 2 11 11 C 1.54385 * 104.61782 * 140.41224 * 10 9 7 12 12 H 1.08997 * 117.61664 * 242.76705 * 11 10 9 13 13 C 1.54290 * 106.22230 * 23.29054 * 11 10 9 14 14 H 1.09001 * 121.81847 * 221.52994 * 13 11 10 15 15 C 1.48146 * 127.83957 * 196.50460 * 9 7 2 16 16 C 1.52996 * 59.72315 * 113.49131 * 13 11 10 17 17 H 1.09008 * 117.40424 * 252.34080 * 16 13 11 18 18 N 1.46501 * 117.44691 * 107.64681 * 16 13 11 19 19 C 1.34774 * 119.99836 * 135.75870 * 18 16 13 20 20 O 1.21590 * 120.00016 * 0.02562 * 19 18 16 21 21 C 1.47549 * 119.99991 * 180.02562 * 19 18 16 22 22 C 1.38692 * 120.38583 * 354.55815 * 21 19 18 23 23 C 1.38972 * 120.53868 * 179.97438 * 22 21 19 24 24 C 1.36214 * 121.23627 * 0.02562 * 23 22 21 25 25 C 1.40714 * 120.19915 * 0.02562 * 24 23 22 26 26 N 1.33693 * 120.93826 * 179.97438 * 25 24 23 27 27 C 1.31064 * 121.34005 * 180.02562 * 26 25 24 28 28 C 1.39341 * 121.70826 * 0.02707 * 27 26 25 29 29 C 1.36680 * 119.86476 * 359.97438 * 28 27 26 30 30 C 1.40470 * 118.17417 * 359.70090 * 29 28 27 31 31 H 0.96997 * 120.00668 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.40511 * 21.62905 * 10 9 7 33 33 H 1.08998 * 110.50583 * 259.24491 * 10 9 7 34 34 H 1.09003 * 110.40654 * 338.37073 * 15 9 7 35 35 H 1.08999 * 110.40554 * 100.80205 * 15 9 7 36 36 H 0.96999 * 120.00110 * 315.76522 * 18 16 13 37 37 H 1.08004 * 119.73495 * 359.97438 * 22 21 19 38 38 H 1.07996 * 119.38563 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.89658 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.14514 * 180.02562 * 27 26 25 41 41 H 1.07991 * 120.06687 * 180.02562 * 28 27 26 42 42 H 1.08003 * 120.90985 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0805 -1.2078 0.1453 9 7 1.3384 -2.3806 -0.1859 10 6 -0.0284 -2.5725 -0.7244 11 6 0.0777 -3.8264 -1.6188 12 1 -0.1215 -3.7058 -2.6836 13 6 1.2958 -4.6213 -1.1040 14 1 2.0041 -5.0927 -1.7854 15 6 1.8131 -3.7532 0.1066 16 6 -0.1151 -5.1966 -0.9658 17 1 -0.5518 -5.2201 0.0327 18 7 -0.4765 -6.3159 -1.8392 19 6 -1.1354 -7.3782 -1.3355 20 8 -1.4304 -7.4073 -0.1562 21 6 -1.4989 -8.5058 -2.2149 22 6 -1.2677 -8.4332 -3.5805 23 6 -1.6083 -9.4935 -4.4117 24 6 -2.1758 -10.6273 -3.9138 25 6 -2.4298 -10.7450 -2.5348 26 7 -2.9865 -11.8508 -2.0303 27 6 -3.2271 -11.9685 -0.7474 28 6 -2.9164 -10.9510 0.1524 29 6 -2.3453 -9.7942 -0.2990 30 6 -2.0835 -9.6764 -1.6741 31 1 -0.4851 0.8400 -0.0004 32 1 -0.3286 -1.7078 -1.3162 33 1 -0.7376 -2.7425 0.0857 34 1 2.9022 -3.7793 0.1417 35 1 1.3930 -4.1082 1.0476 36 1 -0.2414 -6.2925 -2.7800 37 1 -0.8193 -7.5454 -4.0015 38 1 -1.4196 -9.4173 -5.4723 39 1 -2.4322 -11.4381 -4.5796 40 1 -3.6777 -12.8779 -0.3780 41 1 -3.1257 -11.0764 1.2044 42 1 -2.0979 -8.9945 0.3834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961417625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:43 Heat of formation + Delta-G solvation = 74.042906 kcal Electronic energy + Delta-G solvation = -25618.960425 eV Core-core repulsion = 21951.252493 eV Total energy + Delta-G solvation = -3667.707933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13982 -40.90885 -39.71224 -37.94066 -36.19442 -34.47425 -34.32505 -32.37193 -31.56022 -30.92101 -28.81288 -27.64554 -25.79031 -24.75855 -24.41381 -23.18488 -22.07754 -21.62082 -20.91480 -19.32282 -18.87841 -18.59819 -17.97815 -17.42024 -17.19203 -16.73880 -16.19016 -16.04121 -15.69382 -15.41201 -15.21132 -15.06161 -14.76147 -14.63862 -14.13045 -14.02629 -13.70610 -13.32701 -13.26798 -13.06334 -12.86549 -12.74824 -12.70311 -12.34404 -12.13780 -11.99917 -11.91235 -11.70901 -11.52631 -11.33175 -10.88635 -10.72408 -10.31853 -9.84600 -9.83421 -9.32073 -8.93097 -7.93147 -5.30388 -0.92159 -0.20998 0.64169 1.47119 1.48674 1.57875 1.59362 1.79580 2.09856 2.47818 2.84065 3.09745 3.26284 3.30173 3.41329 3.60293 3.72303 3.79098 3.80701 3.83899 3.92681 4.05555 4.06361 4.15918 4.28374 4.40191 4.43856 4.51020 4.71857 4.77000 4.80717 4.85605 4.97542 5.02989 5.15889 5.22978 5.26379 5.30932 5.40690 5.44334 5.51515 5.56646 5.63267 5.77941 6.15443 6.38952 6.84254 6.99145 7.07229 7.65971 8.44603 9.21005 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.002293 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.770290 B =12207.764595 C =12676.376225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.616 5.616 10 C 0.189 3.811 11 C -0.177 4.177 12 H 0.129 0.871 13 C -0.163 4.163 14 H 0.143 0.857 15 C 0.148 3.852 16 C 0.112 3.888 17 H 0.108 0.892 18 N -0.673 5.673 19 C 0.562 3.438 20 O -0.568 6.568 21 C -0.137 4.137 22 C -0.056 4.056 23 C -0.103 4.103 24 C -0.068 4.068 25 C 0.094 3.906 26 N -0.495 5.495 27 C 0.128 3.872 28 C -0.171 4.171 29 C -0.091 4.091 30 C -0.085 4.085 31 H 0.250 0.750 32 H 0.058 0.942 33 H -0.004 1.004 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.417 0.583 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.194 0.806 41 H 0.163 0.837 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -24.038 -10.421 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.063 3.937 11 C -0.198 4.198 12 H 0.147 0.853 13 C -0.184 4.184 14 H 0.160 0.840 15 C 0.022 3.978 16 C 0.005 3.995 17 H 0.125 0.875 18 N -0.323 5.323 19 C 0.351 3.649 20 O -0.450 6.450 21 C -0.141 4.141 22 C -0.075 4.075 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.026 4.026 26 N -0.204 5.204 27 C -0.044 4.044 28 C -0.191 4.191 29 C -0.117 4.117 30 C -0.088 4.088 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.014 0.986 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.256 0.744 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.211 0.789 41 H 0.181 0.819 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.301 -24.412 -10.237 26.819 hybrid contribution 0.381 1.904 0.741 2.079 sum -3.920 -22.507 -9.497 24.741 Atomic orbital electron populations 1.70094 1.06604 1.25853 1.57000 1.25785 0.96491 1.01414 1.01912 0.85033 0.77697 0.78668 0.77640 1.20931 1.22232 1.19172 1.19387 0.91357 0.83397 1.42820 0.89929 1.45404 1.14465 1.01225 1.72886 1.20786 0.86141 0.93604 0.93170 1.24324 1.03924 0.90861 1.00669 0.85338 1.25020 0.90800 1.01126 1.01471 0.83966 1.21838 0.98031 0.84305 0.93618 1.21464 0.97927 0.84944 0.95138 0.87465 1.45053 1.57040 1.17073 1.13118 1.18463 0.76943 0.82274 0.87172 1.90569 1.55979 1.79968 1.18435 1.19746 1.05634 0.93753 0.94944 1.21882 0.94622 1.00124 0.90838 1.21270 0.97121 0.91531 1.02301 1.21370 0.95842 0.99402 0.92057 1.19231 0.98217 0.89879 0.95314 1.68108 1.13160 1.22968 1.16125 1.23585 0.93518 0.99334 0.87943 1.22375 0.99692 0.93837 1.03169 1.22659 0.94089 0.99353 0.95576 1.18830 1.00109 0.94752 0.95068 0.94061 0.92378 0.98632 0.91921 0.96080 0.74362 0.81880 0.80345 0.82393 0.78894 0.81916 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.91 10.91 21.65 0.24 -56.67 16 2 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 3 Si 0.98 45.06 29.56 68.60 2.03 47.09 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -13.40 10.35 84.04 0.87 -12.53 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 9 N -0.62 -31.64 3.38 -681.40 -2.30 -33.94 16 10 C 0.19 9.23 5.68 86.53 0.49 9.72 16 11 C -0.18 -6.25 6.98 -9.88 -0.07 -6.32 16 12 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 13 C -0.16 -5.28 7.34 -8.70 -0.06 -5.34 16 14 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 15 C 0.15 6.11 7.10 87.72 0.62 6.74 16 16 C 0.11 3.55 5.92 44.99 0.27 3.82 16 17 H 0.11 4.08 7.40 -2.38 -0.02 4.07 16 18 N -0.67 -16.16 5.51 -445.68 -2.46 -18.62 16 19 C 0.56 15.49 7.73 86.70 0.67 16.16 16 20 O -0.57 -19.91 12.97 -4.00 -0.05 -19.96 16 21 C -0.14 -3.07 5.90 -19.89 -0.12 -3.19 16 22 C -0.06 -0.78 9.52 22.55 0.21 -0.57 16 23 C -0.10 -1.12 9.92 21.97 0.22 -0.90 16 24 C -0.07 -1.04 9.96 22.40 0.22 -0.82 16 25 C 0.09 2.09 6.60 40.27 0.27 2.35 16 26 N -0.50 -10.75 10.34 -188.68 -1.95 -12.70 16 27 C 0.13 2.24 11.15 85.07 0.95 3.18 16 28 C -0.17 -3.24 10.04 22.17 0.22 -3.02 16 29 C -0.09 -2.32 9.29 22.45 0.21 -2.12 16 30 C -0.08 -2.11 5.76 -21.10 -0.12 -2.23 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.06 3.18 6.58 -2.38 -0.02 3.16 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.42 6.73 6.89 -92.71 -0.64 6.09 16 37 H 0.16 1.19 6.42 -2.91 -0.02 1.17 16 38 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.16 2.10 8.06 -2.92 -0.02 2.08 16 42 H 0.16 4.67 4.96 -3.25 -0.02 4.65 16 Total: -1.00 -76.10 349.96 1.24 -74.86 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.43 Total: 18.06 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.31 Total: 1.88 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -6.47 Total: -121.93 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.10 1.24 -74.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961417625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.905 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds