Wall clock time and date at job start Tue Mar 31 2020 13:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47112 * 299.99804 * 3 2 1 6 6 H 1.48496 * 109.47301 * 60.00238 * 3 2 1 7 7 C 1.38809 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00208 * 170.57281 * 7 2 1 9 9 N 1.36945 * 119.99690 * 350.56827 * 7 2 1 10 10 C 1.48146 * 127.83472 * 164.35239 * 9 7 2 11 11 C 1.57693 * 104.67255 * 139.77596 * 10 9 7 12 12 H 1.08997 * 120.32220 * 244.64269 * 11 10 9 13 13 C 1.54281 * 103.38690 * 24.73173 * 11 10 9 14 14 H 1.09002 * 121.81994 * 220.67375 * 13 11 10 15 15 C 1.48144 * 127.83936 * 344.35802 * 9 7 2 16 16 C 1.52998 * 59.72334 * 112.63407 * 13 11 10 17 17 H 1.09000 * 117.44236 * 252.39478 * 16 13 11 18 18 N 1.46504 * 117.44029 * 107.64796 * 16 13 11 19 19 C 1.34773 * 119.99680 * 155.00622 * 18 16 13 20 20 O 1.21599 * 120.00276 * 359.97438 * 19 18 16 21 21 C 1.47448 * 119.99888 * 179.97438 * 19 18 16 22 22 C 1.38951 * 121.16851 * 359.97438 * 21 19 18 23 23 N 1.32196 * 121.32000 * 180.02562 * 22 21 19 24 24 C 1.31206 * 123.69305 * 359.97438 * 23 22 21 25 25 C 1.40377 * 120.91198 * 0.02562 * 24 23 22 26 26 C 1.40402 * 122.13754 * 180.02562 * 25 24 23 27 27 C 1.36232 * 119.48411 * 179.71885 * 26 25 24 28 28 C 1.39293 * 121.10354 * 0.51689 * 27 26 25 29 29 C 1.36441 * 120.95191 * 359.47250 * 28 27 26 30 30 C 1.39689 * 119.43021 * 0.25955 * 29 28 27 31 31 H 0.97000 * 119.99735 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.40912 * 259.20182 * 10 9 7 33 33 H 1.09006 * 110.40295 * 21.63696 * 10 9 7 34 34 H 1.08999 * 110.40374 * 100.80206 * 15 9 7 35 35 H 1.08995 * 110.50342 * 338.42028 * 15 9 7 36 36 H 0.97005 * 119.99949 * 334.99960 * 18 16 13 37 37 H 1.07998 * 119.34149 * 0.04278 * 22 21 19 38 38 H 1.08005 * 119.53767 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.25883 * 359.95242 * 26 25 24 40 40 H 1.08000 * 119.44843 * 180.26756 * 27 26 25 41 41 H 1.08000 * 119.52343 * 179.75721 * 28 27 26 42 42 H 1.07990 * 120.28453 * 180.23372 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0794 -1.2085 -0.1527 9 7 1.3394 -2.3800 0.1954 10 6 1.8186 -3.7547 -0.0786 11 6 1.2959 -4.6100 1.1388 12 1 2.0010 -5.0722 1.8296 13 6 0.0733 -3.8119 1.6372 14 1 -0.1325 -3.6795 2.6994 15 6 -0.0301 -2.5684 0.7280 16 6 -0.1131 -5.1897 0.9987 17 1 -0.5437 -5.2255 -0.0020 18 7 -0.4774 -6.2998 1.8826 19 6 -1.1312 -7.3691 1.3871 20 8 -1.4191 -7.4123 0.2064 21 6 -1.4974 -8.4866 2.2765 22 6 -1.1800 -8.4629 3.6291 23 7 -1.5064 -9.4634 4.4292 24 6 -2.1424 -10.5385 4.0279 25 6 -2.5234 -10.6922 2.6856 26 6 -3.2051 -11.8313 2.2284 27 6 -3.5541 -11.9216 0.9147 28 6 -3.2366 -10.9072 0.0144 29 6 -2.5750 -9.7866 0.4246 30 6 -2.2069 -9.6593 1.7661 31 1 -0.4850 0.8401 -0.0004 32 1 1.4048 -4.1213 -1.0180 33 1 2.9080 -3.7789 -0.1069 34 1 -0.7325 -2.7498 -0.0855 35 1 -0.3374 -1.6981 1.3076 36 1 -0.2479 -6.2652 2.8245 37 1 -0.6564 -7.6099 4.0349 38 1 -2.3760 -11.3160 4.7403 39 1 -3.4542 -12.6280 2.9136 40 1 -4.0823 -12.7961 0.5645 41 1 -3.5222 -11.0071 -1.0223 42 1 -2.3376 -9.0051 -0.2819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962728474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:27 Heat of formation + Delta-G solvation = 90.954878 kcal Electronic energy + Delta-G solvation = -25562.577718 eV Core-core repulsion = 21895.603143 eV Total energy + Delta-G solvation = -3666.974574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16661 -39.61188 -38.19951 -37.66969 -34.60188 -33.20885 -32.58137 -31.48888 -30.57218 -29.63356 -27.05404 -25.93806 -25.05612 -23.81600 -23.19837 -21.74302 -20.86656 -20.28730 -19.34282 -18.34052 -17.71024 -17.66422 -16.86652 -16.35613 -15.96364 -15.21081 -15.16676 -14.90416 -14.68488 -14.13636 -14.08190 -13.83204 -13.52131 -13.29338 -13.04601 -12.76418 -12.49317 -12.29652 -12.21201 -11.72478 -11.59649 -11.49197 -10.99591 -10.86616 -10.41863 -10.36059 -10.26140 -10.23105 -10.13037 -9.76602 -9.55023 -9.41878 -9.25698 -8.78671 -8.54216 -8.30932 -6.89731 -5.82358 -3.16649 -0.26092 0.55893 1.37183 2.53835 2.91950 2.98092 3.36798 3.42841 3.45335 3.76999 3.89291 4.17801 4.28722 4.33228 4.36054 4.44797 4.53229 4.68680 4.84471 4.92399 5.10684 5.15247 5.27056 5.32873 5.36277 5.43181 5.54376 5.63357 5.70208 5.76469 5.82815 6.02329 6.07257 6.15903 6.18167 6.28577 6.48095 6.55701 6.65860 6.73366 6.85431 7.31276 7.42743 7.50597 7.52707 7.69373 8.11973 8.17476 9.08329 9.71118 10.47701 11.32163 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.002281 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.092898 B =12272.924391 C =12737.285413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.158 3.842 11 C -0.184 4.184 12 H 0.107 0.893 13 C -0.178 4.178 14 H 0.102 0.898 15 C 0.185 3.815 16 C 0.092 3.908 17 H 0.134 0.866 18 N -0.689 5.689 19 C 0.569 3.431 20 O -0.530 6.530 21 C -0.169 4.169 22 C 0.120 3.880 23 N -0.497 5.497 24 C 0.175 3.825 25 C -0.122 4.122 26 C -0.091 4.091 27 C -0.118 4.118 28 C -0.098 4.098 29 C -0.109 4.109 30 C 0.012 3.988 31 H 0.254 0.746 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -24.698 7.101 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.030 3.970 11 C -0.206 4.206 12 H 0.125 0.875 13 C -0.200 4.200 14 H 0.120 0.880 15 C 0.059 3.941 16 C -0.013 4.013 17 H 0.152 0.848 18 N -0.337 5.337 19 C 0.356 3.644 20 O -0.408 6.408 21 C -0.174 4.174 22 C -0.024 4.024 23 N -0.204 5.204 24 C 0.003 3.997 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.136 4.136 28 C -0.117 4.117 29 C -0.127 4.127 30 C 0.007 3.993 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.175 0.825 38 H 0.184 0.816 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.537 -24.189 7.058 26.032 hybrid contribution 0.292 0.734 -0.154 0.805 sum -6.244 -23.455 6.904 25.235 Atomic orbital electron populations 1.69910 1.05068 1.25388 1.55689 1.24912 0.95655 0.98037 1.01686 0.86034 0.78880 0.83466 0.77291 1.20342 1.21659 1.21604 1.19035 0.90914 0.82253 1.43297 0.90436 1.45131 1.13686 0.99978 1.72779 1.21701 0.97258 0.85641 0.92350 1.25118 0.90316 1.02056 1.03071 0.87456 1.24656 1.02336 0.92351 1.00620 0.87993 1.21065 0.87046 0.92400 0.93563 1.21951 0.98763 0.84989 0.95623 0.84801 1.45315 1.57598 1.18449 1.12335 1.17747 0.77840 0.81535 0.87260 1.90642 1.54420 1.79345 1.16414 1.21933 1.04129 0.96066 0.95296 1.22762 0.94803 0.96189 0.88666 1.67118 1.12697 1.01401 1.39196 1.23303 0.89601 0.94166 0.92624 1.19015 1.02250 0.96064 0.95058 1.20954 0.97379 0.96345 0.96389 1.21013 0.99811 0.99246 0.93535 1.21217 0.96889 0.93339 1.00249 1.21855 0.96301 0.99170 0.95353 1.18915 0.94698 0.91567 0.94125 0.93547 0.95097 0.93055 0.95522 0.89073 0.76695 0.82483 0.81643 0.84739 0.85461 0.85250 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.64 10.88 55.49 0.60 -26.04 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.27 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.06 3.38 -166.73 -0.56 -15.62 16 10 C 0.16 3.30 7.10 -0.57 0.00 3.29 16 11 C -0.18 -3.21 7.34 -87.38 -0.64 -3.85 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 13 C -0.18 -3.29 6.98 -89.22 -0.62 -3.92 16 14 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.19 4.41 5.69 -2.41 -0.01 4.39 16 16 C 0.09 1.53 5.92 -67.93 -0.40 1.12 16 17 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 18 N -0.69 -9.26 5.52 -54.87 -0.30 -9.56 16 19 C 0.57 8.22 7.77 -12.51 -0.10 8.12 16 20 O -0.53 -9.14 13.30 5.28 0.07 -9.07 16 21 C -0.17 -2.09 6.07 -102.66 -0.62 -2.71 16 22 C 0.12 1.28 10.71 -17.13 -0.18 1.09 16 23 N -0.50 -5.23 10.22 -12.58 -0.13 -5.36 16 24 C 0.17 1.50 11.00 -17.01 -0.19 1.31 16 25 C -0.12 -1.16 5.74 -106.89 -0.61 -1.77 16 26 C -0.09 -0.65 9.82 -39.49 -0.39 -1.03 16 27 C -0.12 -0.85 9.94 -39.91 -0.40 -1.24 16 28 C -0.10 -0.87 9.96 -39.84 -0.40 -1.27 16 29 C -0.11 -1.29 9.32 -39.69 -0.37 -1.66 16 30 C 0.01 0.15 5.90 -104.75 -0.62 -0.47 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 2.41 6.53 -51.93 -0.34 2.07 16 36 H 0.40 4.19 6.93 -40.82 -0.28 3.91 16 37 H 0.16 1.29 6.44 -52.49 -0.34 0.95 16 38 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.17 2.26 5.24 -52.49 -0.28 1.98 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -32.97 350.84 -10.84 -43.81 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.97 Total: 5.06 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -5.81 Total: -5.28 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.39 Total: -56.58 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.97 -10.84 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962728474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.761 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds