Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47112 * 299.99804 * 3 2 1 6 6 H 1.48496 * 109.47301 * 60.00238 * 3 2 1 7 7 C 1.38809 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00208 * 170.57281 * 7 2 1 9 9 N 1.36945 * 119.99690 * 350.56827 * 7 2 1 10 10 C 1.48146 * 127.83472 * 164.35239 * 9 7 2 11 11 C 1.57693 * 104.67255 * 139.77596 * 10 9 7 12 12 H 1.08997 * 120.32220 * 244.64269 * 11 10 9 13 13 C 1.54281 * 103.38690 * 24.73173 * 11 10 9 14 14 H 1.09002 * 121.81994 * 220.67375 * 13 11 10 15 15 C 1.48144 * 127.83936 * 344.35802 * 9 7 2 16 16 C 1.52998 * 59.72334 * 112.63407 * 13 11 10 17 17 H 1.09000 * 117.44236 * 252.39478 * 16 13 11 18 18 N 1.46504 * 117.44029 * 107.64796 * 16 13 11 19 19 C 1.34773 * 119.99680 * 155.00622 * 18 16 13 20 20 O 1.21599 * 120.00276 * 359.97438 * 19 18 16 21 21 C 1.47448 * 119.99888 * 179.97438 * 19 18 16 22 22 C 1.38951 * 121.16851 * 359.97438 * 21 19 18 23 23 N 1.32196 * 121.32000 * 180.02562 * 22 21 19 24 24 C 1.31206 * 123.69305 * 359.97438 * 23 22 21 25 25 C 1.40377 * 120.91198 * 0.02562 * 24 23 22 26 26 C 1.40402 * 122.13754 * 180.02562 * 25 24 23 27 27 C 1.36232 * 119.48411 * 179.71885 * 26 25 24 28 28 C 1.39293 * 121.10354 * 0.51689 * 27 26 25 29 29 C 1.36441 * 120.95191 * 359.47250 * 28 27 26 30 30 C 1.39689 * 119.43021 * 0.25955 * 29 28 27 31 31 H 0.97000 * 119.99735 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.40912 * 259.20182 * 10 9 7 33 33 H 1.09006 * 110.40295 * 21.63696 * 10 9 7 34 34 H 1.08999 * 110.40374 * 100.80206 * 15 9 7 35 35 H 1.08995 * 110.50342 * 338.42028 * 15 9 7 36 36 H 0.97005 * 119.99949 * 334.99960 * 18 16 13 37 37 H 1.07998 * 119.34149 * 0.04278 * 22 21 19 38 38 H 1.08005 * 119.53767 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.25883 * 359.95242 * 26 25 24 40 40 H 1.08000 * 119.44843 * 180.26756 * 27 26 25 41 41 H 1.08000 * 119.52343 * 179.75721 * 28 27 26 42 42 H 1.07990 * 120.28453 * 180.23372 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0794 -1.2085 -0.1527 9 7 1.3394 -2.3800 0.1954 10 6 1.8186 -3.7547 -0.0786 11 6 1.2959 -4.6100 1.1388 12 1 2.0010 -5.0722 1.8296 13 6 0.0733 -3.8119 1.6372 14 1 -0.1325 -3.6795 2.6994 15 6 -0.0301 -2.5684 0.7280 16 6 -0.1131 -5.1897 0.9987 17 1 -0.5437 -5.2255 -0.0020 18 7 -0.4774 -6.2998 1.8826 19 6 -1.1312 -7.3691 1.3871 20 8 -1.4191 -7.4123 0.2064 21 6 -1.4974 -8.4866 2.2765 22 6 -1.1800 -8.4629 3.6291 23 7 -1.5064 -9.4634 4.4292 24 6 -2.1424 -10.5385 4.0279 25 6 -2.5234 -10.6922 2.6856 26 6 -3.2051 -11.8313 2.2284 27 6 -3.5541 -11.9216 0.9147 28 6 -3.2366 -10.9072 0.0144 29 6 -2.5750 -9.7866 0.4246 30 6 -2.2069 -9.6593 1.7661 31 1 -0.4850 0.8401 -0.0004 32 1 1.4048 -4.1213 -1.0180 33 1 2.9080 -3.7789 -0.1069 34 1 -0.7325 -2.7498 -0.0855 35 1 -0.3374 -1.6981 1.3076 36 1 -0.2479 -6.2652 2.8245 37 1 -0.6564 -7.6099 4.0349 38 1 -2.3760 -11.3160 4.7403 39 1 -3.4542 -12.6280 2.9136 40 1 -4.0823 -12.7961 0.5645 41 1 -3.5222 -11.0071 -1.0223 42 1 -2.3376 -9.0051 -0.2819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962728474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = 70.160374 kcal Electronic energy + Delta-G solvation = -25563.479435 eV Core-core repulsion = 21895.603143 eV Total energy + Delta-G solvation = -3667.876292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97901 -40.83665 -39.61429 -38.36254 -36.16801 -34.54536 -33.70602 -32.24323 -32.16282 -30.55702 -28.82723 -27.68040 -26.09048 -24.52886 -24.14009 -23.16291 -22.08491 -21.76786 -20.93430 -19.11118 -18.89293 -18.56889 -18.45877 -17.53399 -16.82887 -16.68008 -16.20654 -16.11185 -15.75758 -15.46182 -15.07639 -14.95782 -14.74371 -14.65247 -14.41442 -13.81808 -13.68222 -13.34517 -13.25513 -13.17985 -12.92746 -12.87998 -12.75752 -12.42014 -12.11351 -11.99206 -11.91857 -11.72273 -11.15131 -11.13075 -10.89443 -10.74116 -10.44464 -10.10299 -9.83149 -9.14475 -8.94744 -7.93732 -5.30681 -0.99924 -0.14236 0.63898 1.46565 1.47091 1.58530 1.65760 1.77713 2.14015 2.47150 2.81801 3.05722 3.18320 3.26875 3.46358 3.53951 3.62906 3.69041 3.78670 3.86015 3.91071 3.95662 4.04630 4.25545 4.27997 4.31604 4.47115 4.48817 4.58640 4.75115 4.78747 4.84325 4.95849 5.02732 5.13208 5.24404 5.36261 5.39974 5.42009 5.47777 5.51449 5.56903 5.62282 5.89713 6.14304 6.35573 6.80039 6.98253 7.04910 7.65069 8.43451 9.20559 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.002281 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.092898 B =12272.924391 C =12737.285413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.149 3.851 11 C -0.163 4.163 12 H 0.142 0.858 13 C -0.178 4.178 14 H 0.127 0.873 15 C 0.189 3.811 16 C 0.113 3.887 17 H 0.108 0.892 18 N -0.677 5.677 19 C 0.569 3.431 20 O -0.568 6.568 21 C -0.203 4.203 22 C 0.134 3.866 23 N -0.520 5.520 24 C 0.194 3.806 25 C -0.139 4.139 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.088 4.088 29 C -0.152 4.152 30 C -0.008 4.008 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.063 0.937 34 H -0.004 1.004 35 H 0.059 0.941 36 H 0.415 0.585 37 H 0.177 0.823 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.144 0.856 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 -28.008 9.614 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.023 3.977 11 C -0.184 4.184 12 H 0.159 0.841 13 C -0.199 4.199 14 H 0.145 0.855 15 C 0.063 3.937 16 C 0.006 3.994 17 H 0.126 0.874 18 N -0.326 5.326 19 C 0.358 3.642 20 O -0.449 6.449 21 C -0.208 4.208 22 C -0.010 4.010 23 N -0.228 5.228 24 C 0.023 3.977 25 C -0.141 4.141 26 C -0.091 4.091 27 C -0.142 4.142 28 C -0.107 4.107 29 C -0.170 4.170 30 C -0.013 4.013 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.194 0.806 38 H 0.227 0.773 39 H 0.196 0.804 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.281 -27.543 9.600 29.837 hybrid contribution 0.123 1.559 -0.988 1.850 sum -6.158 -25.984 8.611 28.058 Atomic orbital electron populations 1.70110 1.06620 1.25772 1.57120 1.25787 0.96511 1.01438 1.01999 0.84959 0.78317 0.78952 0.76745 1.18733 1.21995 1.21591 1.19433 0.91474 0.83404 1.42513 0.89854 1.45422 1.14107 1.01115 1.73353 1.21833 0.98029 0.84272 0.93571 1.25028 0.90730 1.01162 1.01512 0.84068 1.24331 1.03940 0.90899 1.00720 0.85532 1.20791 0.86135 0.93684 0.93065 1.21459 0.98001 0.85004 0.94935 0.87402 1.45071 1.57528 1.17278 1.12737 1.18178 0.76949 0.81957 0.87141 1.90641 1.55839 1.80148 1.18230 1.21723 1.07247 0.96080 0.95746 1.23053 0.93419 0.96727 0.87809 1.67261 1.14279 1.02182 1.39051 1.24061 0.86714 0.94009 0.92875 1.19318 1.03178 0.96385 0.95191 1.21485 0.94693 0.95955 0.97012 1.21404 0.99804 0.99621 0.93412 1.21516 0.94954 0.92644 1.01585 1.21681 0.99656 1.00201 0.95462 1.19169 0.95047 0.92392 0.94687 0.94066 0.95993 0.91835 0.98612 0.92227 0.74641 0.80616 0.77296 0.80390 0.81985 0.83848 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.62 10.88 21.65 0.24 -57.38 16 2 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 3 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.24 -13.51 10.35 84.03 0.87 -12.64 16 8 H 0.08 4.48 7.85 -2.91 -0.02 4.45 16 9 N -0.62 -32.26 3.38 -681.41 -2.30 -34.56 16 10 C 0.15 6.31 7.10 87.73 0.62 6.93 16 11 C -0.16 -5.55 7.34 -8.70 -0.06 -5.61 16 12 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 13 C -0.18 -6.60 6.98 -9.89 -0.07 -6.67 16 14 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 15 C 0.19 9.47 5.69 86.54 0.49 9.96 16 16 C 0.11 3.79 5.92 44.99 0.27 4.05 16 17 H 0.11 4.28 7.40 -2.39 -0.02 4.27 16 18 N -0.68 -17.97 5.52 -445.78 -2.46 -20.43 16 19 C 0.57 17.01 7.77 86.67 0.67 17.68 16 20 O -0.57 -21.12 13.30 -4.03 -0.05 -21.18 16 21 C -0.20 -5.03 6.07 -18.59 -0.11 -5.14 16 22 C 0.13 2.65 10.71 84.81 0.91 3.55 16 23 N -0.52 -9.54 10.22 -193.72 -1.98 -11.52 16 24 C 0.19 2.61 11.00 85.31 0.94 3.55 16 25 C -0.14 -2.27 5.74 -21.33 -0.12 -2.39 16 26 C -0.07 -0.71 9.82 22.33 0.22 -0.50 16 27 C -0.12 -1.37 9.94 22.06 0.22 -1.15 16 28 C -0.09 -1.49 9.96 22.10 0.22 -1.27 16 29 C -0.15 -3.77 9.32 22.20 0.21 -3.56 16 30 C -0.01 -0.19 5.90 -19.95 -0.12 -0.30 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 3.33 6.53 -2.39 -0.02 3.32 16 36 H 0.42 8.05 6.93 -92.70 -0.64 7.41 16 37 H 0.18 2.52 6.44 -2.91 -0.02 2.51 16 38 H 0.21 0.81 8.06 -2.91 -0.02 0.78 16 39 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 41 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.14 4.13 5.24 -2.92 -0.02 4.12 16 Total: -1.00 -77.31 350.84 1.50 -75.81 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.43 Total: 18.28 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.61 Total: 3.31 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -6.51 Total: -123.90 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -77.31 1.50 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962728474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.973 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds