Wall clock time and date at job start Tue Mar 31 2020 13:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 N 1.46502 * 113.74161 * 269.15906 * 11 10 9 13 13 C 1.34776 * 119.99960 * 203.07876 * 12 11 10 14 14 O 1.21552 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.47856 * 119.99993 * 179.97438 * 13 12 11 16 16 C 1.39615 * 120.50384 * 359.71766 * 15 13 12 17 17 N 1.31699 * 120.83254 * 179.70262 * 16 15 13 18 18 C 1.31811 * 122.01044 * 0.58973 * 17 16 15 19 19 C 1.39397 * 120.91718 * 359.70184 * 18 17 16 20 20 C 1.48403 * 120.46787 * 179.97438 * 19 18 17 21 21 C 1.39336 * 120.11763 * 179.74830 * 20 19 18 22 22 C 1.38025 * 119.87399 * 179.70027 * 21 20 19 23 23 C 1.38318 * 120.12114 * 0.59573 * 22 21 20 24 24 C 1.38317 * 120.24333 * 359.67586 * 23 22 21 25 25 C 1.38021 * 120.12010 * 0.02592 * 24 23 22 26 26 C 1.39514 * 119.06195 * 359.97438 * 19 18 17 27 27 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 28 28 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 30 30 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 31 31 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 32 32 H 0.96996 * 120.00478 * 23.06856 * 12 11 10 33 33 H 1.08005 * 119.58650 * 359.97438 * 16 15 13 34 34 H 1.08006 * 119.53844 * 179.68385 * 18 17 16 35 35 H 1.07999 * 120.06194 * 359.97438 * 21 20 19 36 36 H 1.08003 * 119.93600 * 180.31775 * 22 21 20 37 37 H 1.08003 * 119.87735 * 179.70668 * 23 22 21 38 38 H 1.08002 * 119.94201 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.05853 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.90697 * 179.97438 * 26 19 18 41 41 H 1.09004 * 113.77216 * 90.38247 * 27 9 7 42 42 H 1.09003 * 113.83955 * 318.91224 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 7 0.4203 -4.2629 1.8437 13 6 -0.5136 -4.9870 2.4916 14 8 -1.3970 -5.5392 1.8652 15 6 -0.4638 -5.1098 3.9642 16 6 0.5495 -4.4849 4.6935 17 7 0.5968 -4.5852 6.0058 18 6 -0.2922 -5.2812 6.6859 19 6 -1.3338 -5.9418 6.0363 20 6 -2.3290 -6.7232 6.8118 21 6 -3.3702 -7.3762 6.1555 22 6 -4.2894 -8.1067 6.8811 23 6 -4.1855 -8.1809 8.2584 24 6 -3.1571 -7.5299 8.9155 25 6 -2.2288 -6.8017 8.1992 26 6 -1.4274 -5.8579 4.6468 27 6 -0.1000 -2.7609 -0.1071 28 1 -0.4849 0.8400 -0.0004 29 1 2.5862 -4.0806 0.3562 30 1 1.8198 -4.1205 -1.2922 31 1 -0.1410 -4.9763 -0.0942 32 1 1.1251 -3.8221 2.3436 33 1 1.3016 -3.9083 4.1754 34 1 -0.2124 -5.3408 7.7613 35 1 -3.4553 -7.3147 5.0806 36 1 -5.0940 -8.6176 6.3730 37 1 -4.9097 -8.7497 8.8228 38 1 -3.0803 -7.5914 9.9910 39 1 -1.4260 -6.2941 8.7133 40 1 -2.2220 -6.3582 4.1132 41 1 -0.5474 -2.7777 -1.1009 42 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030403840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:02 Heat of formation + Delta-G solvation = 87.004319 kcal Electronic energy + Delta-G solvation = -25414.708713 eV Core-core repulsion = 21747.562829 eV Total energy + Delta-G solvation = -3667.145884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84639 -39.52871 -38.78208 -37.44816 -33.90023 -33.32358 -32.45151 -31.70330 -31.14277 -29.38386 -27.58520 -25.12463 -24.86787 -24.38117 -23.22824 -22.30100 -21.82280 -20.38489 -19.38982 -18.24428 -17.22019 -16.77365 -16.73823 -16.51802 -15.49405 -15.37638 -15.04645 -14.72690 -14.67955 -14.24796 -13.97809 -13.94208 -13.74039 -13.60244 -13.13662 -13.03384 -12.79849 -12.61073 -12.46347 -11.69311 -11.66714 -11.30624 -11.26956 -10.91148 -10.58695 -10.50065 -10.34782 -10.14985 -9.87016 -9.70373 -9.54576 -9.48206 -9.27843 -8.86694 -8.52966 -8.42190 -6.93868 -5.81769 -3.14818 0.21822 0.72352 1.07886 1.53681 2.94127 3.33852 3.37259 3.41899 3.44273 3.49380 3.87824 4.04976 4.27014 4.41713 4.47632 4.60027 4.62442 4.67309 4.79145 4.90706 5.02177 5.05898 5.11675 5.26902 5.30468 5.42960 5.52225 5.60495 5.70055 5.75563 5.87757 6.05247 6.09418 6.18266 6.19303 6.27185 6.33076 6.35561 6.47225 6.63133 6.73017 7.18159 7.25957 7.54769 7.66902 7.84376 7.93382 8.44463 8.99239 9.66146 10.53910 11.35073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.002499 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.869227 B =11204.011192 C =11762.895458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.612 5.612 10 C 0.110 3.890 11 C 0.088 3.912 12 N -0.683 5.683 13 C 0.561 3.439 14 O -0.543 6.543 15 C -0.172 4.172 16 C 0.137 3.863 17 N -0.480 5.480 18 C 0.126 3.874 19 C -0.108 4.108 20 C -0.039 4.039 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.011 4.011 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.403 0.597 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.039 0.961 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 -16.791 16.414 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.018 4.018 12 N -0.332 5.332 13 C 0.347 3.653 14 O -0.422 6.422 15 C -0.177 4.177 16 C -0.021 4.021 17 N -0.188 5.188 18 C -0.031 4.031 19 C -0.111 4.111 20 C -0.040 4.040 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.037 4.037 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.239 0.761 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.057 0.943 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.007 -16.381 16.411 23.722 hybrid contribution 0.105 0.927 -0.444 1.033 sum -4.901 -15.455 15.967 22.755 Atomic orbital electron populations 1.69842 1.05072 1.25470 1.55822 1.24840 0.95633 0.97564 1.02131 0.86159 0.78760 0.83664 0.77534 1.21618 1.21718 1.20520 1.19001 0.90745 0.82044 1.43819 0.90168 1.46161 1.02213 1.00631 1.84911 1.22925 0.94365 0.86818 0.97511 1.22956 0.99421 1.00201 0.79197 1.45453 1.29458 1.50260 1.08074 1.17909 0.82118 0.79185 0.86117 1.90747 1.35435 1.48002 1.68023 1.21047 0.98814 1.02684 0.95182 1.23163 0.95329 0.93805 0.89767 1.67701 1.25923 1.16527 1.08617 1.23072 0.88849 0.90731 1.00453 1.19710 0.97339 1.00593 0.93409 1.18592 0.94707 0.97655 0.93002 1.21330 0.94104 0.96757 1.00438 1.21128 0.99026 0.98953 0.94245 1.21252 0.98304 0.99515 0.94652 1.21093 0.94920 0.97524 1.00005 1.21214 0.99443 0.99262 0.92893 1.21786 0.96318 0.92924 0.92650 1.22683 0.88144 0.88055 0.98299 0.93566 0.93413 0.93425 0.89008 0.76079 0.81847 0.82190 0.85363 0.85650 0.85951 0.85717 0.85532 0.83256 0.94336 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 11.51 55.49 0.64 -26.28 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.82 29.56 -169.99 -5.02 16.79 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.18 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -14.98 3.70 -177.89 -0.66 -15.64 16 10 C 0.11 2.12 8.68 -2.97 -0.03 2.09 16 11 C 0.09 1.65 4.40 -70.14 -0.31 1.35 16 12 N -0.68 -11.60 5.33 -56.28 -0.30 -11.90 16 13 C 0.56 9.45 7.78 -12.33 -0.10 9.35 16 14 O -0.54 -10.56 16.04 5.32 0.09 -10.48 16 15 C -0.17 -2.44 5.89 -104.87 -0.62 -3.06 16 16 C 0.14 1.82 10.71 -17.10 -0.18 1.64 16 17 N -0.48 -6.26 10.33 -12.64 -0.13 -6.39 16 18 C 0.13 1.39 10.59 -17.13 -0.18 1.21 16 19 C -0.11 -1.22 5.89 -104.80 -0.62 -1.83 16 20 C -0.04 -0.38 5.88 -104.90 -0.62 -1.00 16 21 C -0.11 -1.02 9.44 -39.25 -0.37 -1.39 16 22 C -0.12 -0.92 10.03 -39.63 -0.40 -1.31 16 23 C -0.12 -0.86 10.04 -39.52 -0.40 -1.25 16 24 C -0.12 -0.84 10.03 -39.63 -0.40 -1.24 16 25 C -0.11 -0.90 9.44 -39.26 -0.37 -1.27 16 26 C -0.01 -0.14 9.07 -38.52 -0.35 -0.49 16 27 C 0.15 3.61 7.24 -2.84 -0.02 3.59 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.66 7.51 -51.93 -0.39 1.27 16 32 H 0.40 6.37 6.80 -40.82 -0.28 6.09 16 33 H 0.16 1.96 6.41 -52.48 -0.34 1.63 16 34 H 0.16 1.26 6.21 -52.48 -0.33 0.94 16 35 H 0.13 1.13 6.27 -52.49 -0.33 0.80 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.78 6.23 -52.49 -0.33 0.46 16 40 H 0.15 1.81 5.99 -52.49 -0.31 1.50 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.93 7.37 -51.93 -0.38 1.54 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -33.14 356.60 -9.99 -43.12 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.77 Total: 5.59 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -5.21 Total: -0.19 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.45 Total: -60.21 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.14 -9.99 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030403840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.127 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds