Wall clock time and date at job start Tue Mar 31 2020 13:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 N 1.46502 * 113.74161 * 269.15906 * 11 10 9 13 13 C 1.34776 * 119.99960 * 203.07876 * 12 11 10 14 14 O 1.21552 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.47856 * 119.99993 * 179.97438 * 13 12 11 16 16 C 1.39615 * 120.50384 * 359.71766 * 15 13 12 17 17 N 1.31699 * 120.83254 * 179.70262 * 16 15 13 18 18 C 1.31811 * 122.01044 * 0.58973 * 17 16 15 19 19 C 1.39397 * 120.91718 * 359.70184 * 18 17 16 20 20 C 1.48403 * 120.46787 * 179.97438 * 19 18 17 21 21 C 1.39336 * 120.11763 * 179.74830 * 20 19 18 22 22 C 1.38025 * 119.87399 * 179.70027 * 21 20 19 23 23 C 1.38318 * 120.12114 * 0.59573 * 22 21 20 24 24 C 1.38317 * 120.24333 * 359.67586 * 23 22 21 25 25 C 1.38021 * 120.12010 * 0.02592 * 24 23 22 26 26 C 1.39514 * 119.06195 * 359.97438 * 19 18 17 27 27 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 28 28 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 30 30 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 31 31 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 32 32 H 0.96996 * 120.00478 * 23.06856 * 12 11 10 33 33 H 1.08005 * 119.58650 * 359.97438 * 16 15 13 34 34 H 1.08006 * 119.53844 * 179.68385 * 18 17 16 35 35 H 1.07999 * 120.06194 * 359.97438 * 21 20 19 36 36 H 1.08003 * 119.93600 * 180.31775 * 22 21 20 37 37 H 1.08003 * 119.87735 * 179.70668 * 23 22 21 38 38 H 1.08002 * 119.94201 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.05853 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.90697 * 179.97438 * 26 19 18 41 41 H 1.09004 * 113.77216 * 90.38247 * 27 9 7 42 42 H 1.09003 * 113.83955 * 318.91224 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 7 0.4203 -4.2629 1.8437 13 6 -0.5136 -4.9870 2.4916 14 8 -1.3970 -5.5392 1.8652 15 6 -0.4638 -5.1098 3.9642 16 6 0.5495 -4.4849 4.6935 17 7 0.5968 -4.5852 6.0058 18 6 -0.2922 -5.2812 6.6859 19 6 -1.3338 -5.9418 6.0363 20 6 -2.3290 -6.7232 6.8118 21 6 -3.3702 -7.3762 6.1555 22 6 -4.2894 -8.1067 6.8811 23 6 -4.1855 -8.1809 8.2584 24 6 -3.1571 -7.5299 8.9155 25 6 -2.2288 -6.8017 8.1992 26 6 -1.4274 -5.8579 4.6468 27 6 -0.1000 -2.7609 -0.1071 28 1 -0.4849 0.8400 -0.0004 29 1 2.5862 -4.0806 0.3562 30 1 1.8198 -4.1205 -1.2922 31 1 -0.1410 -4.9763 -0.0942 32 1 1.1251 -3.8221 2.3436 33 1 1.3016 -3.9083 4.1754 34 1 -0.2124 -5.3408 7.7613 35 1 -3.4553 -7.3147 5.0806 36 1 -5.0940 -8.6176 6.3730 37 1 -4.9097 -8.7497 8.8228 38 1 -3.0803 -7.5914 9.9910 39 1 -1.4260 -6.2941 8.7133 40 1 -2.2220 -6.3582 4.1132 41 1 -0.5474 -2.7777 -1.1009 42 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030403840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:01 Heat of formation + Delta-G solvation = 66.600159 kcal Electronic energy + Delta-G solvation = -25415.593504 eV Core-core repulsion = 21747.562829 eV Total energy + Delta-G solvation = -3668.030674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88161 -40.73044 -39.67193 -39.00488 -35.17749 -34.47862 -33.96027 -33.05733 -31.81115 -30.21048 -29.43385 -26.61376 -26.28640 -25.26602 -24.75667 -23.29843 -22.58372 -21.54770 -21.02013 -19.24838 -18.76939 -18.18490 -17.61035 -17.43969 -16.92779 -16.79296 -16.21789 -16.12302 -15.64389 -15.42917 -15.37024 -14.94715 -14.67016 -14.65548 -14.54115 -14.24706 -13.94232 -13.72985 -13.38595 -13.36177 -13.19615 -12.82938 -12.38990 -12.28535 -12.15916 -11.90223 -11.73399 -11.43416 -11.39395 -11.34160 -10.91241 -10.71954 -10.56491 -10.02018 -9.86996 -9.19524 -8.93709 -7.90957 -5.24365 -0.65633 -0.25979 0.48868 0.76875 1.46162 1.47645 1.56362 1.74134 2.02770 2.47150 2.64272 3.03847 3.13818 3.25476 3.40892 3.41989 3.65524 3.67842 3.70534 3.84405 3.90177 4.08072 4.19681 4.31499 4.37245 4.45687 4.55996 4.58705 4.60353 4.79690 4.85096 4.89521 4.91451 5.02086 5.07632 5.14566 5.24637 5.37297 5.48680 5.56266 5.60374 5.61081 5.66274 5.90421 6.05759 6.47310 6.71236 6.90051 7.08491 7.60969 8.54838 9.26076 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.002499 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.869227 B =11204.011192 C =11762.895458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.091 0.909 9 N -0.636 5.636 10 C 0.119 3.881 11 C 0.112 3.888 12 N -0.682 5.682 13 C 0.564 3.436 14 O -0.574 6.574 15 C -0.187 4.187 16 C 0.133 3.867 17 N -0.493 5.493 18 C 0.131 3.869 19 C -0.099 4.099 20 C -0.062 4.062 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.112 4.112 26 C -0.020 4.020 27 C 0.149 3.851 28 H 0.246 0.754 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.409 0.591 33 H 0.171 0.829 34 H 0.195 0.805 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.026 0.974 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -18.137 18.777 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.357 4.357 8 H 0.108 0.892 9 N -0.364 5.364 10 C -0.006 4.006 11 C 0.005 3.995 12 N -0.331 5.331 13 C 0.351 3.649 14 O -0.455 6.455 15 C -0.192 4.192 16 C -0.024 4.024 17 N -0.201 5.201 18 C -0.026 4.026 19 C -0.101 4.101 20 C -0.063 4.063 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.046 4.046 27 C 0.022 3.978 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.247 0.753 33 H 0.188 0.812 34 H 0.212 0.788 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.044 0.956 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.039 -17.762 18.783 26.165 hybrid contribution -0.265 1.204 -1.062 1.627 sum -4.305 -16.558 17.722 24.632 Atomic orbital electron populations 1.70042 1.06615 1.25463 1.58087 1.25649 0.96398 1.00920 1.03104 0.85117 0.78101 0.79441 0.77042 1.21857 1.22626 1.18673 1.19429 0.91381 0.83115 1.41762 0.89165 1.46440 1.02848 1.02018 1.85046 1.23076 0.95169 0.83399 0.98911 1.22603 0.98852 0.97692 0.80335 1.45397 1.29860 1.50443 1.07383 1.18278 0.81185 0.78185 0.87210 1.90722 1.36508 1.49265 1.68975 1.20821 1.00317 1.04605 0.93443 1.23233 0.95241 0.93825 0.90123 1.67765 1.26747 1.17264 1.08309 1.23628 0.87821 0.89298 1.01898 1.19865 0.97533 1.00040 0.92698 1.18645 0.94981 0.98762 0.93885 1.21458 0.94801 0.97535 1.00537 1.21385 0.99142 0.98836 0.94964 1.21635 0.98569 0.98928 0.94438 1.21467 0.94296 0.96658 1.01410 1.21501 1.00193 0.99167 0.92138 1.21889 0.96111 0.92944 0.93651 1.22595 0.87619 0.90630 0.96924 0.94498 0.90947 0.91501 0.87852 0.75340 0.81190 0.78846 0.85947 0.84161 0.83519 0.83062 0.83527 0.83420 0.95635 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.91 11.51 21.65 0.25 -57.67 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 45.34 29.56 68.60 2.03 47.37 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.23 -12.32 10.70 84.03 0.90 -11.42 16 8 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.64 -31.14 3.70 -716.71 -2.65 -33.79 16 10 C 0.12 4.40 8.68 86.48 0.75 5.15 16 11 C 0.11 4.18 4.40 46.75 0.21 4.38 16 12 N -0.68 -23.19 5.33 -450.26 -2.40 -25.59 16 13 C 0.56 19.34 7.78 86.79 0.68 20.01 16 14 O -0.57 -22.87 16.04 -3.88 -0.06 -22.93 16 15 C -0.19 -5.36 5.89 -20.02 -0.12 -5.48 16 16 C 0.13 3.50 10.71 85.05 0.91 4.41 16 17 N -0.49 -12.27 10.33 -193.91 -2.00 -14.27 16 18 C 0.13 2.64 10.59 84.98 0.90 3.54 16 19 C -0.10 -2.14 5.89 -19.98 -0.12 -2.26 16 20 C -0.06 -1.15 5.88 -20.04 -0.12 -1.26 16 21 C -0.13 -2.29 9.44 22.48 0.21 -2.07 16 22 C -0.13 -1.80 10.03 22.24 0.22 -1.58 16 23 C -0.12 -1.37 10.04 22.31 0.22 -1.14 16 24 C -0.12 -1.35 10.03 22.24 0.22 -1.13 16 25 C -0.11 -1.54 9.44 22.48 0.21 -1.33 16 26 C -0.02 -0.52 9.07 22.95 0.21 -0.31 16 27 C 0.15 7.18 7.24 86.44 0.63 7.81 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.10 3.69 7.51 -2.39 -0.02 3.67 16 32 H 0.41 12.85 6.80 -92.71 -0.63 12.22 16 33 H 0.17 4.05 6.41 -2.91 -0.02 4.03 16 34 H 0.19 2.44 6.21 -2.91 -0.02 2.42 16 35 H 0.12 2.25 6.27 -2.91 -0.02 2.23 16 36 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.15 1.29 6.23 -2.91 -0.02 1.27 16 40 H 0.15 3.77 5.99 -2.91 -0.02 3.75 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 Total: -1.00 -72.76 356.60 1.99 -70.78 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.44 Total: 22.13 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.38 Total: 13.97 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -6.80 Total: -131.31 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.06 Total: -22.93 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.76 1.99 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030403840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.378 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds