Wall clock time and date at job start Tue Mar 31 2020 13:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21575 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.47707 * 119.99917 * 180.02562 * 13 12 11 16 16 C 1.40201 * 120.45966 * 180.02562 * 15 13 12 17 17 C 1.38040 * 118.38421 * 179.97438 * 16 15 13 18 18 C 1.39512 * 119.21488 * 0.02562 * 17 16 15 19 19 C 1.48225 * 119.56824 * 180.02562 * 18 17 16 20 20 C 1.39426 * 120.12882 * 359.72514 * 19 18 17 21 21 C 1.37997 * 119.86283 * 179.74576 * 20 19 18 22 22 C 1.38330 * 120.13366 * 0.55085 * 21 20 19 23 23 C 1.38346 * 120.26195 * 359.70293 * 22 21 20 24 24 C 1.37989 * 120.12738 * 0.02562 * 23 22 21 25 25 N 1.32764 * 120.85731 * 359.97438 * 18 17 16 26 26 C 1.31524 * 121.77039 * 359.69427 * 25 18 17 27 27 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 28 28 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 30 30 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 31 31 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 32 32 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 33 33 H 1.07997 * 120.80301 * 0.02562 * 16 15 13 34 34 H 1.07995 * 120.39148 * 180.02562 * 17 16 15 35 35 H 1.07998 * 120.06868 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.93244 * 180.27656 * 21 20 19 37 37 H 1.08005 * 119.87205 * 179.72208 * 22 21 20 38 38 H 1.07996 * 119.93483 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.06459 * 180.02562 * 24 23 22 40 40 H 1.08001 * 119.65056 * 180.31287 * 26 25 18 41 41 H 1.08999 * 113.77157 * 90.38334 * 27 9 7 42 42 H 1.09002 * 113.84143 * 318.91597 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4620 -5.3208 2.2091 15 6 -0.5747 -4.6853 4.2741 16 6 -1.5604 -5.3613 5.0071 17 6 -1.5045 -5.3093 6.3854 18 6 -0.4777 -4.5911 6.9986 19 6 -0.4099 -4.5305 8.4781 20 6 -1.3703 -5.1830 9.2500 21 6 -1.2989 -5.1274 10.6270 22 6 -0.2837 -4.4167 11.2416 23 6 0.6691 -3.7629 10.4809 24 6 0.6113 -3.8160 9.1032 25 7 0.4401 -3.9620 6.2744 26 6 0.4253 -3.9928 4.9596 27 6 -0.1058 -2.7570 0.0001 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0327 0.6538 30 1 1.8325 -4.2346 -0.9996 31 1 -0.1594 -4.9598 0.2327 32 1 1.0580 -3.5720 2.5714 33 1 -2.3437 -5.9100 4.5055 34 1 -2.2469 -5.8185 6.9818 35 1 -2.1664 -5.7338 8.7712 36 1 -2.0398 -5.6361 11.2260 37 1 -0.2345 -4.3723 12.3196 38 1 1.4597 -3.2100 10.9662 39 1 1.3559 -3.3056 8.5104 40 1 1.1920 -3.4728 4.4043 41 1 -0.5312 -2.8713 -0.9969 42 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031138021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:37 Heat of formation + Delta-G solvation = 67.843874 kcal Electronic energy + Delta-G solvation = -25350.353545 eV Core-core repulsion = 21682.376802 eV Total energy + Delta-G solvation = -3667.976743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83109 -40.74036 -39.62410 -38.94031 -35.12713 -34.19463 -33.73148 -33.38597 -31.77885 -30.62650 -29.35308 -26.60540 -26.18549 -25.12768 -24.71627 -23.08720 -22.68747 -21.74097 -21.00153 -19.18348 -18.77391 -18.29775 -17.71149 -17.04244 -16.92555 -16.78129 -16.12795 -15.88553 -15.63331 -15.47870 -15.28349 -15.05992 -14.95583 -14.55401 -14.32078 -14.28826 -14.04434 -13.58742 -13.38495 -13.35561 -13.18908 -12.80344 -12.41244 -12.19208 -12.13485 -11.98958 -11.73679 -11.40600 -11.35188 -11.10609 -10.91052 -10.79513 -10.55642 -10.03074 -9.85617 -9.28006 -8.94542 -7.89351 -5.23869 -0.81365 0.13957 0.50471 0.55822 1.45974 1.47245 1.55826 1.78542 2.07681 2.46949 2.64819 2.94126 3.07250 3.26457 3.40333 3.49740 3.63222 3.75853 3.84580 3.89595 4.03099 4.14479 4.18987 4.31826 4.45280 4.50059 4.56312 4.61528 4.65712 4.79030 4.83322 4.88594 4.99805 5.02583 5.08715 5.17910 5.25399 5.38570 5.48994 5.56934 5.59287 5.62693 5.67883 5.91229 6.05528 6.49505 6.73243 6.90318 7.11079 7.61257 8.54508 9.26747 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.002735 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.327800 B =10236.777407 C =11638.132581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.636 5.636 10 C 0.119 3.881 11 C 0.112 3.888 12 N -0.684 5.684 13 C 0.565 3.435 14 O -0.574 6.574 15 C -0.200 4.200 16 C -0.015 4.015 17 C -0.163 4.163 18 C 0.180 3.820 19 C -0.080 4.080 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.135 4.135 24 C -0.096 4.096 25 N -0.500 5.500 26 C 0.143 3.857 27 C 0.145 3.855 28 H 0.246 0.754 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.408 0.592 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.169 0.831 41 H 0.026 0.974 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -13.790 22.589 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.364 5.364 10 C -0.006 4.006 11 C 0.006 3.994 12 N -0.333 5.333 13 C 0.352 3.648 14 O -0.455 6.455 15 C -0.205 4.205 16 C -0.041 4.041 17 C -0.182 4.182 18 C 0.044 3.956 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.124 4.124 23 C -0.153 4.153 24 C -0.115 4.115 25 N -0.209 5.209 26 C -0.016 4.016 27 C 0.018 3.982 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.245 0.755 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.186 0.814 41 H 0.043 0.957 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.260 -13.424 22.566 26.287 hybrid contribution 0.020 1.259 -1.117 1.683 sum -1.240 -12.165 21.449 24.690 Atomic orbital electron populations 1.70032 1.06545 1.25388 1.58323 1.25609 0.96409 1.00871 1.03202 0.85115 0.77840 0.79308 0.77296 1.21668 1.22579 1.18857 1.19423 0.90893 0.83077 1.42286 0.89318 1.46463 1.02892 1.00655 1.86360 1.23078 0.95061 0.83653 0.98780 1.22575 0.98737 0.98136 0.79958 1.45422 1.29636 1.51651 1.06580 1.18263 0.81023 0.78312 0.87164 1.90723 1.37562 1.45628 1.71615 1.20962 1.00850 1.05481 0.93241 1.21854 0.95584 0.92844 0.93816 1.22341 1.00250 1.01225 0.94414 1.20405 0.90112 0.91136 0.93916 1.18675 0.98395 1.01948 0.89033 1.21565 0.97692 0.97953 0.94518 1.21468 0.99334 0.99535 0.94087 1.21709 0.93776 0.95431 1.01475 1.21431 1.00319 1.00437 0.93090 1.21461 0.97391 0.97135 0.95511 1.67650 1.26218 1.19761 1.07244 1.23076 0.95629 0.93060 0.89873 1.22664 0.87660 0.91386 0.96445 0.94543 0.91095 0.91417 0.87802 0.75505 0.82368 0.80322 0.83246 0.82710 0.83198 0.84103 0.85988 0.81422 0.95654 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 11.39 21.65 0.25 -57.81 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.23 -12.40 10.70 84.03 0.90 -11.50 16 8 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 9 N -0.64 -31.37 3.70 -716.70 -2.65 -34.03 16 10 C 0.12 4.43 8.68 86.49 0.75 5.18 16 11 C 0.11 4.24 4.40 46.74 0.21 4.45 16 12 N -0.68 -23.70 5.32 -450.41 -2.40 -26.10 16 13 C 0.56 19.45 7.77 86.75 0.67 20.12 16 14 O -0.57 -22.78 16.03 -3.95 -0.06 -22.84 16 15 C -0.20 -5.77 5.89 -19.96 -0.12 -5.89 16 16 C -0.02 -0.36 9.70 22.70 0.22 -0.14 16 17 C -0.16 -3.22 9.44 22.53 0.21 -3.01 16 18 C 0.18 4.25 6.73 41.97 0.28 4.53 16 19 C -0.08 -1.62 5.88 -20.05 -0.12 -1.74 16 20 C -0.10 -1.40 9.42 22.50 0.21 -1.19 16 21 C -0.13 -1.41 10.03 22.23 0.22 -1.19 16 22 C -0.11 -1.23 10.04 22.32 0.22 -1.01 16 23 C -0.13 -2.05 10.03 22.24 0.22 -1.82 16 24 C -0.10 -1.96 9.57 22.50 0.22 -1.74 16 25 N -0.50 -13.78 9.40 -183.83 -1.73 -15.51 16 26 C 0.14 3.96 10.70 85.07 0.91 4.87 16 27 C 0.15 7.03 7.32 86.44 0.63 7.66 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 3.72 7.51 -2.39 -0.02 3.71 16 32 H 0.41 13.25 6.79 -92.70 -0.63 12.62 16 33 H 0.16 3.47 7.73 -2.91 -0.02 3.45 16 34 H 0.18 2.07 6.17 -2.91 -0.02 2.05 16 35 H 0.15 1.34 6.17 -2.91 -0.02 1.32 16 36 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 37 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.12 2.74 7.53 -2.91 -0.02 2.72 16 40 H 0.17 4.28 6.41 -2.91 -0.02 4.26 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 2.22 7.16 -2.39 -0.02 2.21 16 Total: -1.00 -73.64 358.75 1.98 -71.65 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.44 Total: 22.83 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.12 Total: 14.22 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.53 Total: -133.44 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.64 1.98 -71.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031138021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.498 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds