Wall clock time and date at job start Tue Mar 31 2020 13:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47512 * 270.28102 * 3 2 1 5 5 H 1.48504 * 109.46944 * 30.28026 * 3 2 1 6 6 H 1.48494 * 109.47418 * 150.27671 * 3 2 1 7 7 C 1.38815 * 120.00282 * 180.28125 * 2 1 3 8 8 H 1.07995 * 119.99886 * 179.72555 * 7 2 1 9 9 N 1.36939 * 119.99932 * 359.71680 * 7 2 1 10 10 C 1.47867 * 126.94197 * 0.03524 * 9 7 2 11 11 C 1.56018 * 105.10122 * 181.97427 * 10 9 7 12 12 H 1.08997 * 116.25231 * 158.82825 * 11 10 9 13 13 C 1.57087 * 99.60608 * 32.80317 * 11 10 9 14 14 C 1.49283 * 126.94156 * 179.70779 * 9 7 2 15 15 H 1.08999 * 116.15509 * 15.87354 * 14 9 7 16 16 C 1.58429 * 103.70494 * 246.55018 * 14 9 7 17 17 N 1.47869 * 104.83053 * 288.55145 * 16 14 9 18 18 C 1.34783 * 126.94211 * 182.30082 * 17 16 14 19 19 O 1.21539 * 119.99620 * 179.97438 * 18 17 16 20 20 C 1.47950 * 119.99990 * 359.97438 * 18 17 16 21 21 N 1.32202 * 120.15967 * 354.65222 * 20 18 17 22 22 C 1.32022 * 122.67735 * 180.02562 * 21 20 18 23 23 C 1.36683 * 122.03608 * 359.97438 * 22 21 20 24 24 C 1.40535 * 118.84457 * 0.02562 * 23 22 21 25 25 C 1.40322 * 122.22377 * 180.02562 * 24 23 22 26 26 C 1.36218 * 119.45025 * 179.09660 * 25 24 23 27 27 C 1.39385 * 120.99998 * 0.87822 * 26 25 24 28 28 C 1.36262 * 121.07878 * 359.43657 * 27 26 25 29 29 C 1.40088 * 119.53792 * 359.97414 * 28 27 26 30 30 H 0.96993 * 120.00619 * 359.72330 * 1 2 3 31 31 H 1.09003 * 110.31118 * 300.87562 * 10 9 7 32 32 H 1.09000 * 110.31855 * 63.06598 * 10 9 7 33 33 H 1.08995 * 112.36731 * 64.27743 * 13 11 10 34 34 H 1.09004 * 112.36696 * 191.71423 * 13 11 10 35 35 H 1.08993 * 110.19301 * 169.85707 * 16 14 9 36 36 H 1.08999 * 110.78638 * 47.53906 * 16 14 9 37 37 H 1.08005 * 118.98218 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.58307 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.27164 * 359.97438 * 25 24 23 40 40 H 1.07998 * 119.50214 * 180.26922 * 26 25 24 41 41 H 1.07999 * 119.46053 * 179.41135 * 27 26 25 42 42 H 1.08004 * 120.23072 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4917 2.0500 -1.4000 5 1 1.4504 2.6509 0.7060 6 1 3.5505 1.4386 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 3.0902 -1.2020 -0.0104 9 7 1.3257 -2.3881 -0.0059 10 6 -0.1421 -2.5669 -0.0007 11 6 -0.3634 -4.1105 0.0487 12 1 -1.3343 -4.4470 0.4123 13 6 0.8877 -4.5275 0.9021 14 6 1.9104 -3.7616 -0.0178 15 1 2.9667 -3.8363 0.2403 16 6 1.4816 -4.3398 -1.4291 17 7 0.0266 -4.5775 -1.3145 18 6 -0.7837 -5.1084 -2.2516 19 8 -1.9690 -5.2480 -2.0215 20 6 -0.2304 -5.5212 -3.5602 21 7 1.0348 -5.2748 -3.8539 22 6 1.5795 -5.6204 -5.0058 23 6 0.8680 -6.2618 -5.9808 24 6 -0.4852 -6.5609 -5.7471 25 6 -1.2814 -7.2174 -6.6979 26 6 -2.5822 -7.4958 -6.4048 27 6 -3.1384 -7.1223 -5.1825 28 6 -2.3957 -6.4777 -4.2393 29 6 -1.0508 -6.1854 -4.5004 30 1 -0.4851 0.8399 0.0041 31 1 -0.5779 -2.0938 0.8793 32 1 -0.5773 -2.1511 -0.9095 33 1 0.8527 -4.1240 1.9141 34 1 1.0529 -5.6049 0.8971 35 1 2.0036 -5.2760 -1.6265 36 1 1.6861 -3.6191 -2.2208 37 1 2.6194 -5.3892 -5.1832 38 1 1.3372 -6.5335 -6.9148 39 1 -0.8624 -7.5123 -7.6486 40 1 -3.1945 -8.0050 -7.1342 41 1 -4.1752 -7.3470 -4.9799 42 1 -2.8406 -6.1949 -3.2967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032593261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:11 Heat of formation + Delta-G solvation = 79.169806 kcal Electronic energy + Delta-G solvation = -27136.390644 eV Core-core repulsion = 23468.905030 eV Total energy + Delta-G solvation = -3667.485613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22949 -41.17424 -39.26769 -38.36488 -35.47879 -34.04966 -33.28129 -32.15127 -31.06959 -30.29976 -30.09027 -26.99394 -26.43264 -24.91998 -24.50768 -23.83355 -22.17233 -21.44602 -20.38408 -19.36774 -18.59706 -18.32630 -17.78826 -17.42999 -16.99427 -16.70426 -16.44904 -15.82421 -15.60211 -15.25178 -15.08178 -14.67915 -14.61825 -14.50100 -13.91216 -13.80122 -13.55717 -13.37398 -13.14788 -13.06645 -12.87635 -12.71385 -12.64862 -12.45383 -12.29541 -12.15409 -12.03226 -11.88278 -11.52642 -11.18971 -10.99261 -10.80863 -10.35089 -10.13959 -9.61893 -9.04986 -8.88505 -7.84081 -5.19497 -0.96255 -0.10791 0.70532 1.46181 1.48132 1.56804 1.61913 1.82629 2.21510 2.48975 3.00623 3.09559 3.32825 3.41646 3.57650 3.64923 3.75458 3.81983 3.85131 3.91160 4.00442 4.17300 4.19859 4.27939 4.41525 4.47498 4.62732 4.70181 4.73255 4.84098 4.90251 4.99279 5.03304 5.09276 5.11494 5.16235 5.30375 5.40456 5.44264 5.48453 5.55929 5.62200 5.64521 5.91083 6.09924 6.52999 6.71835 7.03090 7.06255 7.71011 8.42082 9.27437 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.003551 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.348433 B = 7883.395193 C = 8198.969088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.260 1.260 7 C -0.229 4.229 8 H 0.096 0.904 9 N -0.616 5.616 10 C 0.190 3.810 11 C 0.099 3.901 12 H 0.120 0.880 13 C -0.126 4.126 14 C 0.131 3.869 15 H 0.136 0.864 16 C 0.118 3.882 17 N -0.587 5.587 18 C 0.571 3.429 19 O -0.571 6.571 20 C 0.091 3.909 21 N -0.462 5.462 22 C 0.050 3.950 23 C -0.106 4.106 24 C -0.054 4.054 25 C -0.107 4.107 26 C -0.099 4.099 27 C -0.112 4.112 28 C -0.131 4.131 29 C -0.087 4.087 30 H 0.243 0.757 31 H 0.024 0.976 32 H -0.008 1.008 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.188 0.812 38 H 0.188 0.812 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -19.278 -13.239 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.113 0.887 9 N -0.340 5.340 10 C 0.064 3.936 11 C -0.003 4.003 12 H 0.138 0.862 13 C -0.165 4.165 14 C 0.024 3.976 15 H 0.154 0.846 16 C -0.007 4.007 17 N -0.317 5.317 18 C 0.360 3.640 19 O -0.453 6.453 20 C -0.059 4.059 21 N -0.174 5.174 22 C -0.097 4.097 23 C -0.126 4.126 24 C -0.059 4.059 25 C -0.125 4.125 26 C -0.118 4.118 27 C -0.130 4.130 28 C -0.150 4.150 29 C -0.090 4.090 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.011 0.989 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.205 0.795 38 H 0.206 0.794 39 H 0.190 0.810 40 H 0.183 0.817 41 H 0.165 0.835 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.610 -18.683 -12.601 22.593 hybrid contribution -0.662 1.297 -0.395 1.509 sum 0.947 -17.386 -12.996 21.727 Atomic orbital electron populations 1.70160 1.06642 1.25115 1.58866 1.25677 0.96425 1.01221 1.03158 0.85065 0.77909 0.79174 0.77127 1.21960 1.22692 1.18479 1.19555 0.91283 0.83121 1.41846 0.88679 1.45501 1.01468 1.01129 1.85931 1.21501 0.85042 0.89918 0.97162 1.24291 0.99908 0.94481 0.81650 0.86195 1.24079 0.93529 1.00706 0.98171 1.24241 0.98142 0.83292 0.91906 0.84644 1.23533 0.78181 0.99903 0.99036 1.49116 1.10894 1.57389 1.14311 1.17894 0.84999 0.77823 0.83284 1.90518 1.15849 1.58822 1.80092 1.21099 0.91068 0.99391 0.94314 1.67449 1.11387 1.16027 1.22496 1.22841 1.02072 0.96564 0.88196 1.22633 0.92476 0.95830 1.01614 1.18601 0.95524 0.98643 0.93138 1.21407 0.94085 0.97653 0.99307 1.21487 0.95791 0.97853 0.96651 1.21441 1.01181 0.96731 0.93666 1.22042 0.92978 0.97778 1.02223 1.18893 0.95750 0.99593 0.94758 0.94748 0.95811 0.98938 0.89329 0.88146 0.89752 0.93035 0.79466 0.79447 0.80981 0.81711 0.83505 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.92 10.56 21.65 0.23 -59.69 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.23 -12.57 10.38 84.03 0.87 -11.70 16 8 H 0.10 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.62 -31.00 3.02 -643.14 -1.94 -32.94 16 10 C 0.19 9.89 4.75 87.16 0.41 10.31 16 11 C 0.10 4.08 5.19 46.93 0.24 4.32 16 12 H 0.12 4.73 8.05 -2.39 -0.02 4.71 16 13 C -0.13 -4.20 6.86 33.60 0.23 -3.97 16 14 C 0.13 4.91 5.63 47.96 0.27 5.18 16 15 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 16 C 0.12 4.41 4.93 88.06 0.43 4.84 16 17 N -0.59 -23.95 2.95 -766.58 -2.26 -26.22 16 18 C 0.57 23.82 7.85 86.82 0.68 24.50 16 19 O -0.57 -25.54 13.78 -3.84 -0.05 -25.59 16 20 C 0.09 3.30 6.78 42.43 0.29 3.59 16 21 N -0.46 -14.95 7.13 -184.95 -1.32 -16.27 16 22 C 0.05 1.15 11.06 84.30 0.93 2.08 16 23 C -0.11 -1.93 9.88 22.47 0.22 -1.71 16 24 C -0.05 -1.24 5.75 -21.29 -0.12 -1.36 16 25 C -0.11 -1.68 9.82 22.31 0.22 -1.46 16 26 C -0.10 -1.53 9.95 22.08 0.22 -1.31 16 27 C -0.11 -2.40 9.95 22.09 0.22 -2.18 16 28 C -0.13 -3.98 9.23 22.26 0.21 -3.78 16 29 C -0.09 -2.73 5.76 -21.14 -0.12 -2.85 16 30 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.02 1.37 7.47 -2.39 -0.02 1.35 16 32 H -0.01 -0.47 7.67 -2.39 -0.02 -0.49 16 33 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 2.70 7.65 -2.39 -0.02 2.68 16 36 H 0.05 2.24 7.60 -2.39 -0.02 2.22 16 37 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 5.15 4.96 -3.01 -0.01 5.14 16 Total: -1.00 -78.62 341.82 3.40 -75.22 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.04 Total: 16.34 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 5.67 Total: 20.79 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -5.30 Total: -135.12 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -78.62 3.40 -75.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032593261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.390 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds