Wall clock time and date at job start Tue Mar 31 2020 13:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.46846 * 274.99792 * 3 2 1 5 5 H 1.48493 * 109.47243 * 35.00129 * 3 2 1 6 6 H 1.48506 * 109.47062 * 155.00003 * 3 2 1 7 7 C 1.38813 * 119.99278 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 174.93604 * 7 2 1 9 9 N 1.36936 * 120.00645 * 354.92955 * 7 2 1 10 10 C 1.47865 * 126.94260 * 4.97838 * 9 7 2 11 11 C 1.56017 * 105.10486 * 182.02160 * 10 9 7 12 12 H 1.08999 * 116.24592 * 159.68536 * 11 10 9 13 13 C 1.57073 * 99.60611 * 32.80607 * 11 10 9 14 14 C 1.49287 * 126.94744 * 185.00295 * 9 7 2 15 15 H 1.09005 * 116.15290 * 15.81870 * 14 9 7 16 16 C 1.56022 * 104.09000 * 246.68048 * 14 9 7 17 17 N 1.47875 * 105.09971 * 288.76304 * 16 14 9 18 18 C 1.34781 * 126.94092 * 181.99914 * 17 16 14 19 19 O 1.21564 * 119.99587 * 174.06440 * 18 17 16 20 20 C 1.47776 * 119.99846 * 354.07055 * 18 17 16 21 21 C 1.40649 * 119.69497 * 185.67613 * 20 18 17 22 22 C 1.35855 * 120.87615 * 179.70800 * 21 20 18 23 23 C 1.40397 * 119.84115 * 0.56216 * 22 21 20 24 24 C 1.40636 * 121.97549 * 179.70084 * 23 22 21 25 25 C 1.36221 * 118.72722 * 180.02562 * 24 23 22 26 26 N 1.32597 * 121.90275 * 359.97438 * 25 24 23 27 27 C 1.31233 * 122.74220 * 0.04631 * 26 25 24 28 28 C 1.40549 * 119.88541 * 359.95052 * 27 26 25 29 29 C 1.38557 * 119.70290 * 5.94691 * 20 18 17 30 30 H 0.97007 * 119.99786 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.31948 * 63.11332 * 10 9 7 32 32 H 1.09005 * 110.31630 * 300.92994 * 10 9 7 33 33 H 1.08999 * 112.37344 * 64.27632 * 13 11 10 34 34 H 1.09007 * 112.37103 * 191.71654 * 13 11 10 35 35 H 1.08996 * 110.31348 * 169.86115 * 16 14 9 36 36 H 1.08998 * 110.31768 * 47.67000 * 16 14 9 37 37 H 1.08003 * 119.56253 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.07692 * 180.27463 * 22 21 20 39 39 H 1.08000 * 120.64011 * 0.03699 * 24 23 22 40 40 H 1.08005 * 119.05146 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06065 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.34863 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5046 2.6198 0.8030 6 1 3.5967 1.4119 0.5917 7 6 2.0101 -1.2022 0.0005 8 1 3.0870 -1.2042 -0.0820 9 7 1.3294 -2.3858 0.1059 10 6 -0.1378 -2.5686 0.1239 11 6 -0.3541 -4.1021 0.3128 12 1 -1.3300 -4.4084 0.6896 13 6 0.8960 -4.4354 1.2035 14 6 1.9186 -3.7522 0.2263 15 1 2.9735 -3.7984 0.4972 16 6 1.5169 -4.4578 -1.1060 17 7 0.0610 -4.6915 -0.9944 18 6 -0.7310 -5.3115 -1.8916 19 8 -1.8963 -5.5313 -1.6240 20 6 -0.1828 -5.7240 -3.2004 21 6 -1.0406 -6.2612 -4.1770 22 6 -0.5633 -6.6427 -5.3904 23 6 0.8053 -6.5126 -5.6752 24 6 1.3484 -6.8990 -6.9136 25 6 2.6861 -6.7439 -7.1189 26 7 3.4843 -6.2407 -6.1873 27 6 3.0486 -5.8594 -5.0096 28 6 1.6836 -5.9771 -4.6962 29 6 1.1724 -5.5833 -3.4522 30 1 -0.4850 0.8401 0.0004 31 1 -0.5719 -2.2386 -0.8200 32 1 -0.5775 -2.0189 0.9562 33 1 0.8571 -3.9418 2.1745 34 1 1.0648 -5.5082 1.2968 35 1 2.0457 -5.4055 -1.2067 36 1 1.7322 -3.8111 -1.9567 37 1 -2.0934 -6.3678 -3.9611 38 1 -1.2343 -7.0496 -6.1325 39 1 0.7170 -7.3106 -7.6871 40 1 3.1088 -7.0393 -8.0679 41 1 3.7375 -5.4548 -4.2829 42 1 1.8282 -5.1748 -2.6976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032718230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:54 Heat of formation + Delta-G solvation = 104.775742 kcal Electronic energy + Delta-G solvation = -26992.737715 eV Core-core repulsion = 23326.362458 eV Total energy + Delta-G solvation = -3666.375257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10238 -40.14051 -38.22432 -36.81227 -34.02002 -33.13643 -31.71186 -31.27921 -30.05652 -28.87612 -28.60276 -25.61165 -24.88592 -24.08970 -23.44361 -22.33305 -21.08408 -19.98846 -19.05687 -18.30005 -17.47485 -16.76155 -16.66661 -16.09899 -15.65766 -15.12655 -14.95117 -14.73076 -14.28551 -14.13183 -14.00026 -13.69505 -13.46303 -13.29765 -13.23953 -12.32862 -12.10775 -12.00212 -11.92171 -11.79455 -11.49012 -11.25944 -11.10442 -10.91903 -10.69415 -10.63555 -10.36402 -10.22425 -10.12888 -9.80333 -9.71446 -9.53288 -9.21046 -8.74225 -8.25414 -8.11770 -6.99987 -5.83768 -3.18389 0.10913 0.63492 1.68980 2.56577 3.19901 3.33868 3.39239 3.41733 3.46723 3.99626 4.23556 4.33519 4.36392 4.54193 4.59666 4.68251 4.89940 4.92872 5.02602 5.10522 5.14180 5.27268 5.41457 5.45234 5.49254 5.57273 5.66729 5.68424 5.71971 5.73456 5.81059 5.96591 6.15541 6.19554 6.22650 6.31255 6.38850 6.44907 6.49961 6.56574 6.65632 7.35793 7.39992 7.65294 7.79311 7.92526 8.03109 8.43359 9.03109 9.64501 10.32612 11.28322 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.003924 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.156461 B = 7134.656977 C = 8200.827553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.099 3.901 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.110 0.890 16 C 0.068 3.932 17 N -0.598 5.598 18 C 0.568 3.432 19 O -0.551 6.551 20 C -0.121 4.121 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.010 4.010 24 C -0.162 4.162 25 C 0.080 3.920 26 N -0.494 5.494 27 C 0.159 3.841 28 C -0.122 4.122 29 C -0.078 4.078 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -14.673 -8.225 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.057 4.057 17 N -0.330 5.330 18 C 0.358 3.642 19 O -0.431 6.431 20 C -0.124 4.124 21 C -0.066 4.066 22 C -0.146 4.146 23 C -0.016 4.016 24 C -0.182 4.182 25 C -0.063 4.063 26 N -0.202 5.202 27 C -0.013 4.013 28 C -0.124 4.124 29 C -0.097 4.097 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.410 -14.494 -8.495 17.143 hybrid contribution -0.622 0.885 -0.128 1.089 sum 2.789 -13.609 -8.623 16.351 Atomic orbital electron populations 1.69920 1.05017 1.25422 1.55963 1.24839 0.95654 0.97770 1.01717 0.86122 0.78709 0.83513 0.77519 1.21652 1.21614 1.20486 1.19042 0.90808 0.82059 1.44412 0.90039 1.45246 1.01275 1.00031 1.85467 1.21974 0.84840 0.87217 1.01301 1.24416 0.98044 0.96338 0.81542 0.86568 1.24152 0.96454 0.99442 0.98909 1.23246 0.96807 0.86267 0.90587 0.87212 1.23747 0.80511 0.98743 1.02664 1.49091 1.09255 1.54951 1.19721 1.17797 0.85297 0.77890 0.83221 1.90737 1.16750 1.56914 1.78652 1.20038 0.93995 1.02970 0.95384 1.21012 1.00563 0.93287 0.91698 1.20840 0.93775 1.02429 0.97508 1.18323 0.94033 0.95635 0.93563 1.21901 0.96980 1.02368 0.96952 1.22215 0.90423 0.95636 0.98041 1.67470 1.39875 1.10953 1.01933 1.23332 0.92062 0.92475 0.93396 1.19049 0.95436 1.02599 0.95328 1.23076 0.95921 0.94211 0.96512 0.93517 0.93685 0.92092 0.89521 0.91509 0.91782 0.89985 0.84320 0.84736 0.84505 0.83081 0.81578 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 10.59 55.49 0.59 -25.46 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.17 29.56 -169.99 -5.02 16.15 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.24 -6.01 10.37 -15.06 -0.16 -6.16 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.60 -13.59 3.02 -156.34 -0.47 -14.06 16 10 C 0.17 3.95 4.78 -1.68 -0.01 3.95 16 11 C 0.10 1.83 5.26 -62.56 -0.33 1.50 16 12 H 0.12 2.10 8.03 -51.93 -0.42 1.69 16 13 C -0.15 -2.38 6.81 -22.31 -0.15 -2.53 16 14 C 0.14 2.39 5.53 -62.55 -0.35 2.04 16 15 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 16 C 0.07 1.05 4.23 -1.67 -0.01 1.05 16 17 N -0.60 -10.57 2.95 -160.34 -0.47 -11.04 16 18 C 0.57 10.37 7.85 -12.36 -0.10 10.27 16 19 O -0.55 -11.49 16.66 5.31 0.09 -11.40 16 20 C -0.12 -1.85 5.87 -104.97 -0.62 -2.47 16 21 C -0.05 -0.62 9.49 -39.53 -0.38 -1.00 16 22 C -0.13 -1.46 9.77 -39.62 -0.39 -1.85 16 23 C -0.01 -0.12 5.75 -106.74 -0.61 -0.74 16 24 C -0.16 -1.62 9.87 -39.40 -0.39 -2.01 16 25 C 0.08 0.83 11.07 -17.95 -0.20 0.63 16 26 N -0.49 -6.06 10.30 -13.12 -0.14 -6.19 16 27 C 0.16 1.85 11.05 -16.94 -0.19 1.67 16 28 C -0.12 -1.55 5.74 -106.87 -0.61 -2.16 16 29 C -0.08 -1.04 8.55 -38.75 -0.33 -1.37 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 1.20 7.80 -51.93 -0.41 0.80 16 32 H 0.06 1.56 7.33 -51.93 -0.38 1.18 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.77 6.88 -51.93 -0.36 0.42 16 36 H 0.08 1.37 6.86 -51.93 -0.36 1.01 16 37 H 0.14 1.83 7.62 -52.48 -0.40 1.43 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.17 2.15 2.74 -55.73 -0.15 2.00 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -32.23 341.91 -10.15 -42.38 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.97 Total: 3.83 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -4.90 Total: 0.64 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.49 Total: -56.75 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -10.15 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032718230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.158 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds