Wall clock time and date at job start Tue Mar 31 2020 13:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.46846 * 274.99792 * 3 2 1 5 5 H 1.48493 * 109.47243 * 35.00129 * 3 2 1 6 6 H 1.48506 * 109.47062 * 155.00003 * 3 2 1 7 7 C 1.38813 * 119.99278 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 174.93604 * 7 2 1 9 9 N 1.36936 * 120.00645 * 354.92955 * 7 2 1 10 10 C 1.47865 * 126.94260 * 4.97838 * 9 7 2 11 11 C 1.56017 * 105.10486 * 182.02160 * 10 9 7 12 12 H 1.08999 * 116.24592 * 159.68536 * 11 10 9 13 13 C 1.57073 * 99.60611 * 32.80607 * 11 10 9 14 14 C 1.49287 * 126.94744 * 185.00295 * 9 7 2 15 15 H 1.09005 * 116.15290 * 15.81870 * 14 9 7 16 16 C 1.56022 * 104.09000 * 246.68048 * 14 9 7 17 17 N 1.47875 * 105.09971 * 288.76304 * 16 14 9 18 18 C 1.34781 * 126.94092 * 181.99914 * 17 16 14 19 19 O 1.21564 * 119.99587 * 174.06440 * 18 17 16 20 20 C 1.47776 * 119.99846 * 354.07055 * 18 17 16 21 21 C 1.40649 * 119.69497 * 185.67613 * 20 18 17 22 22 C 1.35855 * 120.87615 * 179.70800 * 21 20 18 23 23 C 1.40397 * 119.84115 * 0.56216 * 22 21 20 24 24 C 1.40636 * 121.97549 * 179.70084 * 23 22 21 25 25 C 1.36221 * 118.72722 * 180.02562 * 24 23 22 26 26 N 1.32597 * 121.90275 * 359.97438 * 25 24 23 27 27 C 1.31233 * 122.74220 * 0.04631 * 26 25 24 28 28 C 1.40549 * 119.88541 * 359.95052 * 27 26 25 29 29 C 1.38557 * 119.70290 * 5.94691 * 20 18 17 30 30 H 0.97007 * 119.99786 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.31948 * 63.11332 * 10 9 7 32 32 H 1.09005 * 110.31630 * 300.92994 * 10 9 7 33 33 H 1.08999 * 112.37344 * 64.27632 * 13 11 10 34 34 H 1.09007 * 112.37103 * 191.71654 * 13 11 10 35 35 H 1.08996 * 110.31348 * 169.86115 * 16 14 9 36 36 H 1.08998 * 110.31768 * 47.67000 * 16 14 9 37 37 H 1.08003 * 119.56253 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.07692 * 180.27463 * 22 21 20 39 39 H 1.08000 * 120.64011 * 0.03699 * 24 23 22 40 40 H 1.08005 * 119.05146 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06065 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.34863 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5046 2.6198 0.8030 6 1 3.5967 1.4119 0.5917 7 6 2.0101 -1.2022 0.0005 8 1 3.0870 -1.2042 -0.0820 9 7 1.3294 -2.3858 0.1059 10 6 -0.1378 -2.5686 0.1239 11 6 -0.3541 -4.1021 0.3128 12 1 -1.3300 -4.4084 0.6896 13 6 0.8960 -4.4354 1.2035 14 6 1.9186 -3.7522 0.2263 15 1 2.9735 -3.7984 0.4972 16 6 1.5169 -4.4578 -1.1060 17 7 0.0610 -4.6915 -0.9944 18 6 -0.7310 -5.3115 -1.8916 19 8 -1.8963 -5.5313 -1.6240 20 6 -0.1828 -5.7240 -3.2004 21 6 -1.0406 -6.2612 -4.1770 22 6 -0.5633 -6.6427 -5.3904 23 6 0.8053 -6.5126 -5.6752 24 6 1.3484 -6.8990 -6.9136 25 6 2.6861 -6.7439 -7.1189 26 7 3.4843 -6.2407 -6.1873 27 6 3.0486 -5.8594 -5.0096 28 6 1.6836 -5.9771 -4.6962 29 6 1.1724 -5.5833 -3.4522 30 1 -0.4850 0.8401 0.0004 31 1 -0.5719 -2.2386 -0.8200 32 1 -0.5775 -2.0189 0.9562 33 1 0.8571 -3.9418 2.1745 34 1 1.0648 -5.5082 1.2968 35 1 2.0457 -5.4055 -1.2067 36 1 1.7322 -3.8111 -1.9567 37 1 -2.0934 -6.3678 -3.9611 38 1 -1.2343 -7.0496 -6.1325 39 1 0.7170 -7.3106 -7.6871 40 1 3.1088 -7.0393 -8.0679 41 1 3.7375 -5.4548 -4.2829 42 1 1.8282 -5.1748 -2.6976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032718230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:54 Heat of formation + Delta-G solvation = 85.432009 kcal Electronic energy + Delta-G solvation = -26993.576522 eV Core-core repulsion = 23326.362458 eV Total energy + Delta-G solvation = -3667.214064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19135 -41.37734 -39.58067 -37.90075 -35.62671 -34.32334 -33.20159 -32.26261 -31.33713 -30.34984 -30.02949 -27.14012 -26.27058 -25.11095 -24.75190 -23.31586 -22.46124 -21.44489 -20.55072 -19.44361 -18.78282 -18.08778 -17.89112 -17.20446 -17.12645 -16.44419 -16.26785 -15.88886 -15.74582 -15.24665 -15.24135 -14.78751 -14.70924 -14.57652 -14.35648 -13.75173 -13.56857 -13.38298 -13.11527 -13.04348 -12.88106 -12.83058 -12.69659 -12.49476 -12.17923 -12.15201 -11.99101 -11.65730 -11.54062 -11.22535 -11.14429 -10.68392 -10.48987 -10.21011 -9.61014 -9.11751 -8.89929 -7.84543 -5.19573 -0.81383 -0.32597 0.77698 1.47971 1.48557 1.49171 1.58285 1.85549 2.32011 2.49283 3.05430 3.26816 3.32835 3.42338 3.46787 3.59512 3.68613 3.74559 3.80690 3.87576 3.99769 4.05484 4.08735 4.20687 4.31986 4.44265 4.58130 4.61892 4.65398 4.77078 4.78962 4.83528 4.87496 4.95863 5.02976 5.13982 5.19796 5.24628 5.31111 5.45398 5.52848 5.60470 5.66403 5.72836 6.10246 6.54238 6.96487 7.02767 7.03618 7.71794 8.41894 9.26905 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.003924 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.156461 B = 7134.656977 C = 8200.827553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.973 3.027 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.259 1.259 7 C -0.228 4.228 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.186 3.814 11 C 0.100 3.900 12 H 0.115 0.885 13 C -0.128 4.128 14 C 0.137 3.863 15 H 0.144 0.856 16 C 0.074 3.926 17 N -0.602 5.602 18 C 0.562 3.438 19 O -0.589 6.589 20 C -0.146 4.146 21 C -0.067 4.067 22 C -0.112 4.112 23 C -0.024 4.024 24 C -0.156 4.156 25 C 0.074 3.926 26 N -0.512 5.512 27 C 0.153 3.847 28 C -0.136 4.136 29 C -0.068 4.068 30 H 0.243 0.757 31 H -0.007 1.007 32 H 0.023 0.977 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.188 0.812 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -17.020 -9.726 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.222 1.222 5 H -0.230 1.230 6 H -0.183 1.183 7 C -0.357 4.357 8 H 0.117 0.883 9 N -0.339 5.339 10 C 0.060 3.940 11 C -0.003 4.003 12 H 0.132 0.868 13 C -0.167 4.167 14 C 0.030 3.970 15 H 0.161 0.839 16 C -0.049 4.049 17 N -0.333 5.333 18 C 0.354 3.646 19 O -0.472 6.472 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.130 4.130 23 C -0.030 4.030 24 C -0.175 4.175 25 C -0.068 4.068 26 N -0.220 5.220 27 C -0.018 4.018 28 C -0.138 4.138 29 C -0.088 4.088 30 H 0.052 0.948 31 H 0.011 0.989 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.198 0.802 41 H 0.205 0.795 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.333 -16.887 -9.994 20.620 hybrid contribution -1.445 1.528 0.200 2.113 sum 4.888 -15.359 -9.794 18.860 Atomic orbital electron populations 1.70163 1.06662 1.25082 1.58691 1.25643 0.96293 1.01120 1.03118 0.85132 0.78204 0.79598 0.76832 1.22198 1.22967 1.18326 1.19555 0.91704 0.83027 1.41415 0.88313 1.45491 1.01294 1.01868 1.85296 1.21546 0.85271 0.90147 0.97081 1.24238 0.99686 0.92999 0.83336 0.86764 1.24062 0.93496 1.01475 0.97703 1.23698 0.98593 0.83024 0.91676 0.83876 1.23747 0.79471 1.00675 1.01047 1.49152 1.10291 1.54575 1.19295 1.18347 0.84884 0.77328 0.84079 1.90697 1.18358 1.58656 1.79476 1.19914 0.95182 1.05390 0.94400 1.21050 1.00278 0.94728 0.92593 1.21146 0.94150 1.00690 0.96994 1.18675 0.94251 0.95578 0.94463 1.22244 0.97286 1.01314 0.96669 1.22774 0.90701 0.94662 0.98710 1.67534 1.40710 1.11383 1.02397 1.23666 0.91945 0.92313 0.93847 1.19201 0.96268 1.03127 0.95229 1.23066 0.95044 0.93527 0.97162 0.94790 0.98912 0.95886 0.89838 0.87794 0.86954 0.91282 0.84951 0.81493 0.81167 0.80195 0.79528 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.50 10.59 21.65 0.23 -57.27 16 2 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 3 Si 0.97 44.39 29.56 68.60 2.03 46.42 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.23 -11.64 10.37 84.03 0.87 -10.76 16 8 H 0.10 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.62 -28.17 3.02 -648.54 -1.96 -30.13 16 10 C 0.19 9.04 4.78 87.16 0.42 9.45 16 11 C 0.10 3.78 5.26 46.93 0.25 4.03 16 12 H 0.11 4.32 8.03 -2.39 -0.02 4.30 16 13 C -0.13 -3.79 6.81 33.46 0.23 -3.56 16 14 C 0.14 4.32 5.53 46.93 0.26 4.58 16 15 H 0.14 3.62 8.14 -2.38 -0.02 3.60 16 16 C 0.07 2.13 4.23 87.16 0.37 2.50 16 17 N -0.60 -21.20 2.95 -779.47 -2.30 -23.50 16 18 C 0.56 20.94 7.85 86.77 0.68 21.62 16 19 O -0.59 -25.66 16.66 -3.92 -0.07 -25.73 16 20 C -0.15 -4.45 5.87 -20.09 -0.12 -4.57 16 21 C -0.07 -1.79 9.49 22.31 0.21 -1.58 16 22 C -0.11 -2.33 9.77 22.24 0.22 -2.11 16 23 C -0.02 -0.52 5.75 -21.24 -0.12 -0.64 16 24 C -0.16 -2.51 9.87 22.39 0.22 -2.29 16 25 C 0.07 1.27 11.07 84.11 0.93 2.20 16 26 N -0.51 -11.05 10.30 -195.41 -2.01 -13.06 16 27 C 0.15 3.18 11.05 85.35 0.94 4.12 16 28 C -0.14 -3.17 5.74 -21.32 -0.12 -3.29 16 29 C -0.07 -1.74 8.55 22.81 0.20 -1.55 16 30 H 0.24 14.46 8.31 -92.70 -0.77 13.69 16 31 H -0.01 -0.43 7.80 -2.39 -0.02 -0.45 16 32 H 0.02 1.27 7.33 -2.38 -0.02 1.25 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.10 2.39 8.14 -2.38 -0.02 2.38 16 35 H 0.11 2.24 6.88 -2.39 -0.02 2.22 16 36 H 0.07 2.22 6.86 -2.39 -0.02 2.20 16 37 H 0.13 3.62 7.62 -2.91 -0.02 3.60 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.18 4.08 2.74 -5.96 -0.02 4.06 16 Total: -1.00 -75.36 341.91 2.87 -72.49 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.05 Total: 15.96 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.89 Total: 14.81 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.04 Total: -123.96 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.36 2.87 -72.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032718230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.927 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds