Wall clock time and date at job start Tue Mar 31 2020 13:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47223 * 270.00340 * 3 2 1 5 5 H 1.48497 * 109.46946 * 30.00044 * 3 2 1 6 6 H 1.48500 * 109.47104 * 150.00219 * 3 2 1 7 7 C 1.38813 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00060 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.47872 * 126.94078 * 359.97438 * 9 7 2 11 11 C 1.55488 * 105.16707 * 181.92948 * 10 9 7 12 12 H 1.08999 * 116.03870 * 159.75666 * 11 10 9 13 13 C 1.57427 * 99.68728 * 32.85340 * 11 10 9 14 14 C 1.49285 * 126.94440 * 180.02562 * 9 7 2 15 15 H 1.08996 * 116.15295 * 15.83489 * 14 9 7 16 16 C 1.56023 * 104.08974 * 246.69387 * 14 9 7 17 17 N 1.47875 * 105.10466 * 288.76658 * 16 14 9 18 18 C 1.34769 * 126.94557 * 181.97976 * 17 16 14 19 19 O 1.21610 * 120.00043 * 184.90543 * 18 17 16 20 20 C 1.47441 * 120.00167 * 4.90098 * 18 17 16 21 21 C 1.38948 * 121.17118 * 316.11902 * 20 18 17 22 22 N 1.32202 * 121.32006 * 179.97438 * 21 20 18 23 23 C 1.31194 * 123.69363 * 0.02562 * 22 21 20 24 24 C 1.40389 * 120.91610 * 359.73478 * 23 22 21 25 25 C 1.40399 * 122.13889 * 179.72852 * 24 23 22 26 26 C 1.36231 * 119.48348 * 180.23131 * 25 24 23 27 27 C 1.39297 * 121.10368 * 0.30532 * 26 25 24 28 28 C 1.36437 * 120.95055 * 359.97310 * 27 26 25 29 29 C 1.39691 * 119.43618 * 0.02562 * 28 27 26 30 30 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.31634 * 300.90768 * 10 9 7 32 32 H 1.08992 * 110.31819 * 62.99972 * 10 9 7 33 33 H 1.09005 * 112.53638 * 191.70475 * 13 11 10 34 34 H 1.09000 * 112.31588 * 64.17705 * 13 11 10 35 35 H 1.09003 * 110.31481 * 169.86392 * 16 14 9 36 36 H 1.08997 * 110.31842 * 47.67197 * 16 14 9 37 37 H 1.07999 * 119.33960 * 359.96097 * 21 20 18 38 38 H 1.08002 * 119.54444 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.25987 * 0.51032 * 25 24 23 40 40 H 1.07999 * 119.44765 * 180.27974 * 26 25 24 41 41 H 1.08008 * 119.52214 * 179.97438 * 27 26 25 42 42 H 1.08002 * 120.28261 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1423 -2.5669 -0.0018 11 6 -0.3648 -4.1050 0.0474 12 1 -1.3440 -4.4360 0.3932 13 6 0.8841 -4.5259 0.9085 14 6 1.9103 -3.7617 -0.0018 15 1 2.9643 -3.8352 0.2660 16 6 1.5093 -4.3451 -1.3921 17 7 0.0524 -4.5830 -1.3045 18 6 -0.7396 -5.1179 -2.2547 19 8 -1.9421 -5.1751 -2.0826 20 6 -0.1482 -5.6337 -3.5029 21 6 0.8352 -4.9231 -4.1802 22 7 1.3678 -5.3830 -5.2993 23 6 1.0240 -6.5205 -5.8552 24 6 0.0452 -7.3412 -5.2727 25 6 -0.3464 -8.5604 -5.8483 26 6 -1.3054 -9.3122 -5.2392 27 6 -1.9091 -8.8885 -4.0575 28 6 -1.5567 -7.7065 -3.4741 29 6 -0.5766 -6.9110 -4.0723 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5814 -2.0922 0.8757 32 1 -0.5740 -2.1512 -0.9121 33 1 1.0493 -5.6034 0.9060 34 1 0.8452 -4.1207 1.9196 35 1 2.0353 -5.2820 -1.5755 36 1 1.7284 -3.6263 -2.1817 37 1 1.1710 -3.9759 -3.7845 38 1 1.5032 -6.8317 -6.7717 39 1 0.1124 -8.9019 -6.7644 40 1 -1.6029 -10.2521 -5.6800 41 1 -2.6670 -9.5045 -3.5964 42 1 -2.0315 -7.3887 -2.5576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032800089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:23 Heat of formation + Delta-G solvation = 89.085398 kcal Electronic energy + Delta-G solvation = -27081.123491 eV Core-core repulsion = 23414.067850 eV Total energy + Delta-G solvation = -3667.055641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95937 -39.89857 -37.80336 -37.42426 -33.73137 -32.88713 -31.60254 -31.28786 -29.92576 -28.88167 -28.54738 -25.45217 -24.97049 -23.72142 -23.42732 -22.69357 -20.65960 -19.94949 -18.72224 -18.32083 -17.53121 -17.38988 -16.44896 -15.97078 -15.76493 -15.39257 -14.76021 -14.48635 -14.20010 -14.14527 -13.92811 -13.85251 -13.38548 -13.26373 -12.68674 -12.33188 -12.25051 -12.09769 -11.86899 -11.70209 -11.44852 -11.31726 -11.07747 -10.90235 -10.80595 -10.65015 -10.30357 -10.19743 -10.09624 -9.96594 -9.66701 -9.31368 -9.22628 -8.73480 -8.25519 -8.05691 -6.96730 -5.79353 -3.14367 0.06167 0.76543 1.59440 2.82262 3.06245 3.24254 3.36699 3.41462 3.43949 3.94950 4.25020 4.39283 4.40570 4.52005 4.57835 4.71021 4.82986 4.96821 5.06758 5.10562 5.13296 5.30113 5.43272 5.50420 5.52416 5.58558 5.60879 5.72738 5.80197 5.87767 5.90303 6.10609 6.20872 6.21695 6.29829 6.34706 6.36532 6.50505 6.54549 6.61738 6.65532 7.38626 7.43766 7.68920 7.83592 7.94852 8.06857 8.41822 9.07268 9.68249 10.36393 11.32693 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.003493 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.668493 B = 8013.843070 C = 8616.996613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.100 3.900 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.142 3.858 15 H 0.108 0.892 16 C 0.079 3.921 17 N -0.597 5.597 18 C 0.578 3.422 19 O -0.544 6.544 20 C -0.155 4.155 21 C 0.114 3.886 22 N -0.489 5.489 23 C 0.161 3.839 24 C -0.119 4.119 25 C -0.088 4.088 26 C -0.122 4.122 27 C -0.099 4.099 28 C -0.100 4.100 29 C 0.009 3.991 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 -18.862 -8.083 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.189 4.189 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.330 5.330 18 C 0.366 3.634 19 O -0.424 6.424 20 C -0.159 4.159 21 C -0.029 4.029 22 N -0.196 5.196 23 C -0.011 4.011 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.118 4.118 29 C 0.003 3.997 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.717 -17.978 -8.311 19.819 hybrid contribution -0.268 0.507 0.207 0.609 sum 0.449 -17.472 -8.105 19.265 Atomic orbital electron populations 1.69911 1.04958 1.25390 1.56246 1.24825 0.95688 0.97758 1.01901 0.86112 0.78564 0.83392 0.77609 1.21554 1.21688 1.20609 1.19045 0.90425 0.81998 1.44652 0.90081 1.45261 1.01294 0.99288 1.86271 1.21846 0.84776 0.87080 1.01548 1.24379 0.97866 0.97826 0.80135 0.86679 1.24200 0.96536 0.98945 0.99268 1.23175 0.96679 0.86315 0.90566 0.87380 1.23514 0.79689 0.99037 1.02414 1.49170 1.09510 1.58884 1.15389 1.17391 0.85834 0.78019 0.82176 1.90761 1.13768 1.58579 1.79270 1.21987 0.99753 0.96264 0.97945 1.23063 0.90553 0.99214 0.90072 1.67156 1.26997 1.14544 1.10902 1.23247 0.91602 0.88581 0.97679 1.18976 0.99625 0.97324 0.96147 1.20953 0.97213 0.93030 0.99560 1.20934 0.96949 1.00160 0.95917 1.21072 0.99222 0.96064 0.95487 1.21169 0.95999 0.93774 1.00873 1.18868 0.94931 0.92572 0.93319 0.93538 0.92400 0.93340 0.91577 0.89572 0.92683 0.90736 0.81656 0.81860 0.84798 0.85547 0.85423 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.56 55.49 0.59 -25.95 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.23 -6.11 10.38 -15.06 -0.16 -6.27 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.07 3.02 -156.71 -0.47 -14.54 16 10 C 0.17 4.07 4.75 -1.97 -0.01 4.06 16 11 C 0.10 1.90 5.22 -62.62 -0.33 1.57 16 12 H 0.12 2.10 8.08 -51.93 -0.42 1.68 16 13 C -0.15 -2.47 6.82 -22.14 -0.15 -2.62 16 14 C 0.14 2.57 5.52 -62.58 -0.35 2.23 16 15 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 16 C 0.08 1.34 4.98 -1.67 -0.01 1.33 16 17 N -0.60 -11.04 2.95 -158.08 -0.47 -11.50 16 18 C 0.58 10.94 7.15 -12.52 -0.09 10.85 16 19 O -0.54 -11.60 15.69 5.27 0.08 -11.52 16 20 C -0.15 -2.56 5.68 -102.66 -0.58 -3.15 16 21 C 0.11 1.81 9.79 -17.13 -0.17 1.65 16 22 N -0.49 -7.10 10.22 -12.58 -0.13 -7.23 16 23 C 0.16 1.86 11.00 -17.01 -0.19 1.68 16 24 C -0.12 -1.43 5.74 -106.89 -0.61 -2.04 16 25 C -0.09 -0.78 9.82 -39.49 -0.39 -1.17 16 26 C -0.12 -1.05 9.94 -39.91 -0.40 -1.44 16 27 C -0.10 -1.02 9.96 -39.84 -0.40 -1.41 16 28 C -0.10 -1.36 9.29 -39.69 -0.37 -1.72 16 29 C 0.01 0.13 5.90 -104.74 -0.62 -0.49 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.06 1.50 7.46 -51.93 -0.39 1.12 16 32 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.37 6.14 -51.93 -0.32 1.05 16 37 H 0.17 2.71 5.74 -52.49 -0.30 2.41 16 38 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 42 H 0.14 2.10 6.39 -52.49 -0.34 1.76 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -32.31 343.18 -10.24 -42.56 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.09 Total: 3.62 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -4.90 Total: 2.82 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.48 Total: -59.22 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.31 -10.24 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032800089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.642 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds