Wall clock time and date at job start Tue Mar 31 2020 15:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35721 * 117.00531 * 2 1 4 4 C 1.39360 * 120.35520 * 0.27351 * 3 2 1 5 5 N 1.31292 * 120.87816 * 180.28775 * 4 3 2 6 6 C 1.32893 * 121.71677 * 359.71666 * 5 4 3 7 7 C 1.47761 * 119.68707 * 179.97438 * 6 5 4 8 8 O 1.21561 * 120.00210 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99790 * 0.03088 * 7 6 5 10 10 C 1.46507 * 119.99612 * 179.97438 * 9 7 6 11 11 C 1.53002 * 110.88706 * 62.42723 * 10 9 7 12 12 C 1.55154 * 111.00080 * 186.34765 * 10 9 7 13 13 C 1.54325 * 102.94424 * 82.57249 * 12 10 9 14 14 N 1.47022 * 107.26923 * 22.19154 * 13 12 10 15 15 C 1.36933 * 125.64882 * 181.02360 * 14 13 12 16 16 H 1.07996 * 120.00317 * 173.94119 * 15 14 13 17 17 C 1.38815 * 120.00061 * 353.94448 * 15 14 13 18 18 N 1.31618 * 119.99676 * 6.82605 * 17 15 14 19 19 Si 1.86795 * 120.00027 * 186.83057 * 17 15 14 20 20 H 1.48505 * 109.47011 * 94.98337 * 19 17 15 21 21 H 1.48497 * 109.46949 * 214.98380 * 19 17 15 22 22 H 1.48501 * 109.47102 * 334.98299 * 19 17 15 23 23 C 1.47423 * 108.70321 * 1.06035 * 14 13 12 24 24 C 1.39716 * 120.62660 * 0.02562 * 6 5 4 25 25 F 1.35097 * 120.46712 * 179.97438 * 24 6 5 26 26 C 1.38687 * 119.06901 * 359.97438 * 24 6 5 27 27 H 1.09004 * 109.46222 * 299.99780 * 1 2 3 28 28 H 1.08996 * 109.46902 * 59.99075 * 1 2 3 29 29 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.56756 * 0.02562 * 4 3 2 31 31 H 0.96993 * 119.99986 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.47060 * 60.69392 * 11 10 9 33 33 H 1.08999 * 109.47239 * 180.69836 * 11 10 9 34 34 H 1.09003 * 109.46906 * 300.69821 * 11 10 9 35 35 H 1.09000 * 110.72032 * 200.93965 * 12 10 9 36 36 H 1.09004 * 110.72108 * 324.20670 * 12 10 9 37 37 H 1.08997 * 109.88324 * 262.77669 * 13 12 10 38 38 H 1.08999 * 109.88245 * 141.60536 * 13 12 10 39 39 H 0.97002 * 120.00026 * 179.97438 * 18 17 15 40 40 H 1.09004 * 110.36602 * 217.03446 * 23 14 13 41 41 H 1.08999 * 110.46585 * 94.75509 * 23 14 13 42 42 H 1.07995 * 120.79138 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2092 0.0000 4 6 1.2937 2.3827 0.0057 5 7 1.8791 3.5579 0.0001 6 6 3.2025 3.6792 -0.0056 7 6 3.8141 5.0242 -0.0123 8 8 5.0240 5.1418 -0.0180 9 7 3.0304 6.1208 -0.0120 10 6 3.6369 7.4545 -0.0182 11 6 4.4597 7.6737 -1.2893 12 6 2.5573 8.5570 0.1435 13 6 2.3348 8.6019 1.6699 14 7 3.5378 8.0417 2.3030 15 6 3.7317 7.8852 3.6494 16 1 4.6106 7.3733 4.0125 17 6 2.7985 8.3843 4.5478 18 7 1.6649 8.8876 4.1074 19 14 3.1518 8.3419 6.3815 20 1 3.7299 9.6427 6.8045 21 1 1.8889 8.0968 7.1233 22 1 4.1174 7.2523 6.6745 23 6 4.5010 7.6773 1.2481 24 6 4.0210 2.5469 -0.0063 25 9 5.3660 2.6739 -0.0126 26 6 3.4334 1.2907 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2153 2.3249 0.0106 31 1 2.0651 6.0270 -0.0078 32 1 3.8107 7.5909 -2.1611 33 1 4.9097 8.6662 -1.2642 34 1 5.2451 6.9201 -1.3482 35 1 2.9273 9.5154 -0.2207 36 1 1.6388 8.2760 -0.3720 37 1 1.4634 8.0033 1.9353 38 1 2.1915 9.6328 1.9935 39 1 1.0126 9.2360 4.7351 40 1 5.0267 6.7605 1.5147 41 1 5.2116 8.4875 1.0845 42 1 4.0395 0.3968 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046368457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:41 Heat of formation + Delta-G solvation = -67.622659 kcal Electronic energy + Delta-G solvation = -27943.047019 eV Core-core repulsion = 23838.426782 eV Total energy + Delta-G solvation = -4104.620237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.16849 -41.98835 -41.06319 -39.37096 -38.55603 -35.70834 -33.94223 -33.32268 -32.12467 -31.17517 -30.29161 -28.48971 -27.52621 -26.00714 -25.36096 -24.32764 -22.65683 -21.97416 -20.52538 -19.72183 -19.34423 -18.97480 -18.49706 -17.40483 -17.37779 -17.05302 -16.63282 -16.60798 -16.36170 -16.00600 -15.76921 -15.56869 -15.17686 -14.82067 -14.40411 -14.33436 -14.14519 -13.94592 -13.81410 -13.53287 -13.40239 -13.09460 -12.92608 -12.87386 -12.74983 -12.50643 -12.16623 -12.04634 -11.99230 -11.71247 -11.57700 -11.19692 -10.74870 -10.71245 -10.67328 -10.06782 -9.68533 -8.85626 -7.87467 -5.20099 -0.64019 -0.20287 1.42022 1.44103 1.52890 1.59663 1.81390 2.07890 2.47460 2.54434 2.89023 3.00603 3.30384 3.33232 3.50736 3.62292 3.73204 3.74468 4.01075 4.04828 4.18803 4.40415 4.41666 4.42401 4.64190 4.67031 4.70233 4.80121 4.81173 4.86954 4.93423 5.03711 5.08098 5.13171 5.35553 5.42136 5.62764 5.68866 5.76077 5.95612 6.19701 6.32393 6.62164 7.10996 7.18433 7.76776 8.42061 9.23016 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.003998 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.152191 B = 7002.573126 C = 7941.752295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.305 6.305 3 C 0.146 3.854 4 C 0.017 3.983 5 N -0.403 5.403 6 C -0.017 4.017 7 C 0.567 3.433 8 O -0.557 6.557 9 N -0.678 5.678 10 C 0.162 3.838 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.186 3.814 14 N -0.621 5.621 15 C -0.245 4.245 16 H 0.066 0.934 17 C -0.056 4.056 18 N -0.943 5.943 19 Si 0.973 3.027 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.276 1.276 23 C 0.128 3.872 24 C 0.138 3.862 25 F -0.115 7.115 26 C -0.158 4.158 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.209 0.791 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.248 0.752 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -17.016 -14.348 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.096 3.904 4 C -0.147 4.147 5 N -0.115 5.115 6 C -0.154 4.154 7 C 0.353 3.647 8 O -0.436 6.436 9 N -0.328 5.328 10 C 0.076 3.924 11 C -0.197 4.197 12 C -0.165 4.165 13 C 0.061 3.939 14 N -0.347 5.347 15 C -0.374 4.374 16 H 0.084 0.916 17 C -0.250 4.250 18 N -0.591 5.591 19 Si 0.801 3.199 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.202 1.202 23 C 0.002 3.998 24 C 0.115 3.885 25 F -0.093 7.093 26 C -0.185 4.185 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.148 0.852 30 H 0.225 0.775 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.214 -16.282 -14.165 22.202 hybrid contribution 0.350 -0.484 1.480 1.596 sum -4.865 -16.766 -12.685 21.579 Atomic orbital electron populations 1.23683 0.74608 1.06980 1.03538 1.86086 1.24793 1.24215 1.86491 1.19993 0.91714 0.86790 0.91917 1.23682 1.02715 0.85562 1.02699 1.67475 1.08511 1.28513 1.06990 1.21074 0.90405 0.93373 1.10584 1.17837 0.86184 0.84037 0.76655 1.90770 1.14447 1.86803 1.51553 1.45584 1.10534 1.04425 1.72237 1.21492 0.94258 0.81583 0.95114 1.21917 0.99936 1.02800 0.95090 1.23103 0.98632 0.98139 0.96622 1.20946 0.88285 0.96002 0.88680 1.44682 1.15395 1.73385 1.01253 1.19309 1.05417 1.30628 0.82081 0.91642 1.25530 0.96492 1.00953 1.01994 1.70158 1.08232 1.47150 1.33572 0.85152 0.76842 0.77739 0.80163 1.21127 1.21486 1.20165 1.21991 0.92265 0.96967 0.88587 1.18432 0.78113 0.93680 0.98265 1.91595 1.28414 1.96599 1.92670 1.20990 0.93799 0.97091 1.06591 0.90782 0.90112 0.85196 0.77458 0.75127 0.90386 0.90195 0.92624 0.88527 0.88525 0.97003 0.96746 0.94230 0.95317 0.95297 0.79821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.82 113.37 1.11 1.14 16 2 O -0.31 -4.05 10.50 -90.44 -0.95 -5.00 16 3 C 0.15 2.60 6.72 22.73 0.15 2.76 16 4 C 0.02 0.33 10.21 85.04 0.87 1.20 16 5 N -0.40 -10.98 9.52 -184.39 -1.76 -12.74 16 6 C -0.02 -0.55 6.75 41.86 0.28 -0.27 16 7 C 0.57 21.78 7.19 86.76 0.62 22.40 16 8 O -0.56 -24.31 12.07 -3.91 -0.05 -24.36 16 9 N -0.68 -24.57 5.16 -419.54 -2.17 -26.74 16 10 C 0.16 5.98 0.82 4.99 0.00 5.98 16 11 C -0.14 -4.20 8.62 71.98 0.62 -3.58 16 12 C -0.13 -4.48 5.99 31.78 0.19 -4.29 16 13 C 0.19 9.19 5.37 86.73 0.47 9.66 16 14 N -0.62 -33.91 3.39 -692.00 -2.35 -36.25 16 15 C -0.25 -14.75 10.26 84.03 0.86 -13.89 16 16 H 0.07 3.95 7.84 -2.91 -0.02 3.92 16 17 C -0.06 -3.31 5.48 84.86 0.47 -2.84 16 18 N -0.94 -57.22 10.36 21.65 0.22 -56.99 16 19 Si 0.97 47.64 29.56 68.60 2.03 49.67 16 20 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 C 0.13 6.01 6.11 86.85 0.53 6.54 16 24 C 0.14 4.04 7.31 22.73 0.17 4.21 16 25 F -0.11 -3.84 15.54 44.97 0.70 -3.14 16 26 C -0.16 -3.34 10.10 22.57 0.23 -3.11 16 27 H 0.07 0.29 7.66 -2.38 -0.02 0.27 16 28 H 0.08 0.18 7.68 -2.39 -0.02 0.16 16 29 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.21 2.19 6.31 -2.91 -0.02 2.17 16 31 H 0.41 13.85 7.81 -92.71 -0.72 13.12 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 34 H 0.05 1.89 6.45 -2.39 -0.02 1.88 16 35 H 0.10 3.03 8.04 -2.39 -0.02 3.01 16 36 H 0.10 2.84 8.05 -2.38 -0.02 2.82 16 37 H 0.01 0.64 7.55 -2.39 -0.02 0.63 16 38 H 0.01 0.79 7.37 -2.39 -0.02 0.78 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.03 1.49 6.31 -2.39 -0.02 1.47 16 41 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 42 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -78.45 348.05 2.60 -75.85 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.34 Total: 13.81 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 6.57 Total: 25.90 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -6.05 Total: -132.72 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.00 Total: -29.36 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.70 Total: -3.14 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -78.45 2.60 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046368457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.231 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds