Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00159 * 2 1 4 4 H 1.48497 * 109.46987 * 85.01948 * 3 2 1 5 5 H 1.48503 * 109.46803 * 325.02067 * 3 2 1 6 6 H 1.48495 * 109.47138 * 205.02319 * 3 2 1 7 7 C 1.38811 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00456 * 186.40999 * 7 2 1 9 9 N 1.36942 * 119.99826 * 6.41461 * 7 2 1 10 10 C 1.47290 * 135.92762 * 6.10528 * 9 7 2 11 11 C 1.52590 * 87.57992 * 153.92754 * 10 9 7 12 12 C 1.47282 * 135.93031 * 186.47756 * 9 7 2 13 13 C 1.53347 * 116.36658 * 269.05267 * 11 10 9 14 14 C 1.54772 * 103.67144 * 205.95204 * 13 11 10 15 15 C 1.54550 * 104.07874 * 359.14150 * 14 13 11 16 16 H 1.09006 * 110.32079 * 264.69260 * 15 14 13 17 17 C 1.53004 * 110.32090 * 142.48809 * 15 14 13 18 18 N 1.46503 * 109.46903 * 179.97438 * 17 15 14 19 19 C 1.34775 * 119.99988 * 179.97438 * 18 17 15 20 20 O 1.21699 * 119.99967 * 0.02562 * 19 18 17 21 21 C 1.46653 * 119.99772 * 179.97438 * 19 18 17 22 22 C 1.37932 * 126.21370 * 179.68875 * 21 19 18 23 23 C 1.39924 * 107.11226 * 179.90603 * 22 21 19 24 24 F 1.35104 * 126.08177 * 180.13713 * 23 22 21 25 25 C 1.35571 * 107.84396 * 0.36177 * 23 22 21 26 26 N 1.35752 * 108.82890 * 359.77751 * 25 23 22 27 27 H 0.96997 * 125.67905 * 179.97438 * 26 25 23 28 28 O 1.43102 * 116.33728 * 142.32873 * 11 10 9 29 29 H 0.96992 * 119.99718 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.51661 * 268.58660 * 10 9 7 31 31 H 1.09008 * 113.51176 * 39.17154 * 10 9 7 32 32 H 1.09000 * 113.51778 * 320.82851 * 12 9 7 33 33 H 1.09001 * 113.51753 * 91.34873 * 12 9 7 34 34 H 1.08991 * 110.58343 * 324.50312 * 13 11 10 35 35 H 1.09006 * 110.58145 * 87.25935 * 13 11 10 36 36 H 1.08997 * 110.49960 * 117.79076 * 14 13 11 37 37 H 1.08995 * 110.50781 * 240.48410 * 14 13 11 38 38 H 1.09001 * 109.47059 * 299.99408 * 17 15 14 39 39 H 1.08996 * 109.47170 * 59.99917 * 17 15 14 40 40 H 0.97008 * 119.99627 * 359.97438 * 18 17 15 41 41 H 1.07999 * 126.44534 * 0.02578 * 22 21 19 42 42 H 1.07995 * 125.58901 * 179.80417 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3925 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5964 1.4121 -0.5922 7 6 2.0103 -1.2021 0.0005 8 1 3.0853 -1.2050 0.1050 9 7 1.3321 -2.3844 -0.1314 10 6 -0.0610 -2.7811 -0.3988 11 6 0.4886 -4.0814 -0.9782 12 6 1.6755 -3.8149 -0.0615 13 6 0.7849 -4.0850 -2.4827 14 6 0.6562 -5.5760 -2.8773 15 6 0.3185 -6.2888 -1.5483 16 1 1.2256 -6.6799 -1.0873 17 6 -0.6850 -7.4181 -1.7910 18 7 -0.9911 -8.0807 -0.5208 19 6 -1.8580 -9.1122 -0.4906 20 8 -2.3861 -9.4935 -1.5186 21 6 -2.1641 -9.7758 0.7809 22 6 -3.0311 -10.8334 0.9601 23 6 -3.0186 -11.1497 2.3231 24 9 -3.7307 -12.1313 2.9187 25 6 -2.1687 -10.2928 2.9406 26 7 -1.6430 -9.4526 2.0129 27 1 -1.0063 -8.7423 2.1892 28 8 -0.2693 -5.2656 -0.7116 29 1 -0.4849 0.8400 0.0004 30 1 -0.6536 -2.9238 0.5047 31 1 -0.5588 -2.1508 -1.1358 32 1 2.6375 -4.0539 -0.5148 33 1 1.5611 -4.2415 0.9351 34 1 0.0522 -3.4820 -3.0190 35 1 1.7941 -3.7209 -2.6755 36 1 -0.1493 -5.7118 -3.5990 37 1 1.5983 -5.9469 -3.2810 38 1 -1.6001 -7.0058 -2.2160 39 1 -0.2565 -8.1421 -2.4841 40 1 -0.5699 -7.7769 0.2986 41 1 -3.6093 -11.3262 0.1925 42 1 -1.9459 -10.2809 3.9972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053629903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -41.850454 kcal Electronic energy + Delta-G solvation = -26635.597449 eV Core-core repulsion = 22532.094778 eV Total energy + Delta-G solvation = -4103.502670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.53717 -42.34594 -41.51080 -40.15604 -38.19619 -35.82020 -34.16340 -33.12619 -31.93873 -31.27115 -29.99735 -28.63577 -26.66863 -25.57200 -24.08685 -23.34961 -22.29052 -21.76744 -21.33843 -20.49589 -20.05238 -18.74358 -17.67546 -17.30634 -17.08916 -16.99062 -16.77494 -16.48713 -16.37205 -16.08510 -15.81395 -15.71701 -15.41279 -14.85411 -14.69633 -14.55738 -14.48218 -14.16090 -13.99954 -13.53356 -13.26138 -13.00783 -12.86080 -12.73902 -12.59499 -12.41792 -12.34333 -12.03270 -11.92424 -11.60826 -11.35739 -11.33643 -10.89465 -10.42551 -10.30977 -10.00192 -9.32544 -9.00915 -7.97276 -5.30572 0.23832 1.37765 1.45618 1.47181 1.56836 1.87790 2.00276 2.18976 2.41243 2.77359 3.26731 3.43847 3.45849 3.51141 3.68839 3.76089 3.86400 4.03651 4.05235 4.14529 4.24561 4.40980 4.48038 4.54843 4.58205 4.73506 4.80797 4.87364 4.89531 4.94437 5.03496 5.10417 5.12962 5.14671 5.25792 5.34538 5.37946 5.42831 5.72337 5.82333 6.06822 6.24174 6.42660 6.83827 7.01022 7.53999 8.52863 9.22181 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.002372 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.015560 B =11803.444988 C =12705.629565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.228 4.228 8 H 0.092 0.908 9 N -0.629 5.629 10 C 0.172 3.828 11 C 0.075 3.925 12 C 0.108 3.892 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.062 3.938 16 H 0.097 0.903 17 C 0.132 3.868 18 N -0.711 5.711 19 C 0.590 3.410 20 O -0.568 6.568 21 C -0.041 4.041 22 C -0.146 4.146 23 C -0.031 4.031 24 F -0.137 7.137 25 C 0.036 3.964 26 N -0.509 5.509 27 H 0.443 0.557 28 O -0.368 6.368 29 H 0.250 0.750 30 H 0.012 0.988 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.411 0.589 41 H 0.151 0.849 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -21.020 1.362 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.356 4.356 8 H 0.110 0.890 9 N -0.356 5.356 10 C 0.046 3.954 11 C 0.034 3.966 12 C -0.017 4.017 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.005 3.995 16 H 0.115 0.885 17 C 0.009 3.991 18 N -0.362 5.362 19 C 0.378 3.622 20 O -0.447 6.447 21 C -0.156 4.156 22 C -0.173 4.173 23 C -0.056 4.056 24 F -0.116 7.116 25 C -0.102 4.102 26 N -0.107 5.107 27 H 0.285 0.715 28 O -0.286 6.286 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.247 0.753 41 H 0.169 0.831 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.945 -20.838 0.768 20.873 hybrid contribution 0.204 1.536 0.776 1.733 sum 1.149 -19.302 1.544 19.397 Atomic orbital electron populations 1.70042 1.06734 1.25910 1.57629 1.25735 0.96509 1.01248 1.02525 0.85012 0.77961 0.78741 0.77312 1.21412 1.22152 1.18668 1.19333 0.91070 0.82324 1.42871 0.89023 1.45716 1.06136 1.00746 1.83041 1.21799 0.88060 0.89774 0.95808 1.23315 0.92676 0.85315 0.95312 1.22845 0.97241 0.84365 0.97279 1.22265 1.02679 0.97680 0.92303 1.22943 1.04518 0.92809 0.96962 1.23429 0.95949 0.88414 0.91723 0.88500 1.21545 0.98770 0.93116 0.85704 1.45692 1.45266 1.32967 1.12241 1.17072 0.78796 0.79582 0.86781 1.90841 1.53331 1.66077 1.34472 1.19968 1.06289 1.03401 0.85895 1.21422 1.01475 0.98406 0.96033 1.16698 1.02615 0.94850 0.91428 1.91427 1.76985 1.59801 1.83353 1.22376 0.98106 0.92514 0.97238 1.41773 1.35601 1.28185 1.05133 0.71500 1.88927 1.55746 1.19288 1.64654 0.94156 0.97031 0.94835 0.91758 0.93941 0.91830 0.90281 0.89381 0.87420 0.91741 0.88057 0.75324 0.83139 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 11.82 21.65 0.26 -57.31 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.98 44.56 29.56 68.60 2.03 46.58 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.23 -12.42 10.73 84.03 0.90 -11.52 16 8 H 0.09 4.68 7.84 -2.91 -0.02 4.66 16 9 N -0.63 -31.39 3.75 -740.30 -2.78 -34.16 16 10 C 0.17 8.23 6.80 83.58 0.57 8.80 16 11 C 0.07 2.61 1.39 -11.04 -0.02 2.60 16 12 C 0.11 4.07 8.18 83.49 0.68 4.75 16 13 C -0.11 -3.28 6.50 31.32 0.20 -3.07 16 14 C -0.13 -2.62 6.65 31.73 0.21 -2.40 16 15 C 0.06 1.24 3.35 31.12 0.10 1.35 16 16 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 17 C 0.13 2.50 5.28 86.38 0.46 2.96 16 18 N -0.71 -12.93 5.51 -467.09 -2.57 -15.51 16 19 C 0.59 13.47 7.79 86.44 0.67 14.14 16 20 O -0.57 -17.33 16.88 -4.35 -0.07 -17.41 16 21 C -0.04 -0.79 7.05 40.36 0.28 -0.50 16 22 C -0.15 -3.09 10.66 22.61 0.24 -2.85 16 23 C -0.03 -0.57 7.98 22.06 0.18 -0.40 16 24 F -0.14 -2.85 17.32 44.97 0.78 -2.07 16 25 C 0.04 0.41 11.90 83.47 0.99 1.40 16 26 N -0.51 -5.82 6.00 -183.38 -1.10 -6.92 16 27 H 0.44 2.34 8.19 -92.71 -0.76 1.58 16 28 O -0.37 -10.87 11.12 -148.98 -1.66 -12.53 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.03 1.79 7.59 -2.38 -0.02 1.77 16 32 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.05 8.11 -2.39 -0.02 2.03 16 35 H 0.08 2.37 7.92 -2.38 -0.02 2.35 16 36 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 5.61 7.60 -92.70 -0.70 4.90 16 41 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -76.15 359.52 0.44 -75.71 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.39 Total: 11.64 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.95 Total: 11.97 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -6.20 Total: -113.90 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.73 Total: -29.93 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.15 0.44 -75.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053629903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.862 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds