Wall clock time and date at job start Tue Mar 31 2020 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99519 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47499 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46773 * 120.00442 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00430 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.47207 * 135.97404 * 359.63524 * 9 7 2 11 11 C 1.52709 * 87.79745 * 153.79768 * 10 9 7 12 12 C 1.47216 * 135.97453 * 180.02562 * 9 7 2 13 13 C 1.53652 * 115.24462 * 140.76912 * 11 10 9 14 14 C 1.55489 * 101.96930 * 111.31018 * 13 11 10 15 15 C 1.55007 * 101.04245 * 33.48356 * 14 13 11 16 16 H 1.09001 * 110.30264 * 82.89922 * 15 14 13 17 17 C 1.53003 * 110.38583 * 205.00697 * 15 14 13 18 18 N 1.46493 * 109.47445 * 182.26436 * 17 15 14 19 19 C 1.34775 * 120.00201 * 179.97438 * 18 17 15 20 20 O 1.21702 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.46658 * 120.00304 * 179.97438 * 19 18 17 22 22 C 1.37926 * 126.21522 * 179.68329 * 21 19 18 23 23 C 1.39926 * 107.10798 * 179.88395 * 22 21 19 24 24 F 1.35109 * 126.08057 * 180.14554 * 23 22 21 25 25 C 1.35562 * 107.84459 * 0.39173 * 23 22 21 26 26 N 1.35747 * 108.83337 * 359.75760 * 25 23 22 27 27 H 0.96999 * 125.68021 * 179.97438 * 26 25 23 28 28 O 1.42391 * 116.11563 * 269.27635 * 11 10 9 29 29 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.50153 * 268.53354 * 10 9 7 31 31 H 1.08999 * 113.49942 * 39.06550 * 10 9 7 32 32 H 1.08999 * 113.49574 * 320.93154 * 12 9 7 33 33 H 1.09003 * 113.49859 * 91.46711 * 12 9 7 34 34 H 1.09000 * 110.93314 * 229.47863 * 13 11 10 35 35 H 1.09003 * 110.93393 * 353.13951 * 13 11 10 36 36 H 1.09002 * 111.10169 * 275.54599 * 14 13 11 37 37 H 1.08991 * 111.14131 * 151.44903 * 14 13 11 38 38 H 1.09008 * 109.46591 * 302.26344 * 17 15 14 39 39 H 1.08998 * 109.47251 * 62.25751 * 17 15 14 40 40 H 0.97005 * 120.00186 * 359.97438 * 18 17 15 41 41 H 1.08001 * 126.44939 * 0.03457 * 22 21 19 42 42 H 1.08004 * 125.58897 * 179.79394 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0895 -2.7932 0.0064 11 6 0.3398 -4.0910 -0.6743 12 6 1.6826 -3.8163 -0.0005 13 6 -0.3886 -5.3555 -0.1931 14 6 -1.2378 -5.7326 -1.4397 15 6 -0.3008 -5.2753 -2.5867 16 1 0.4431 -6.0440 -2.7966 17 6 -1.1122 -4.9651 -3.8462 18 7 -0.2038 -4.5875 -4.9317 19 6 -0.6983 -4.2697 -6.1445 20 8 -1.8995 -4.2967 -6.3380 21 6 0.2111 -3.8912 -7.2311 22 6 -0.1531 -3.5495 -8.5168 23 6 1.0244 -3.2597 -9.2149 24 9 1.1092 -2.8789 -10.5084 25 6 2.0653 -3.4343 -8.3643 26 7 1.5832 -3.8184 -7.1548 27 1 2.1170 -4.0099 -6.3679 28 8 0.3385 -4.0821 -2.0982 29 1 -0.4850 0.8401 0.0004 30 1 -0.4944 -2.9409 1.0076 31 1 -0.7246 -2.1646 -0.6176 32 1 2.5408 -4.0498 -0.6305 33 1 1.7631 -4.2441 0.9988 34 1 0.3219 -6.1462 0.0478 35 1 -1.0282 -5.1350 0.6616 36 1 -2.1772 -5.1799 -1.4565 37 1 -1.4164 -6.8069 -1.4834 38 1 -1.6807 -5.8479 -4.1387 39 1 -1.7977 -4.1423 -3.6433 40 1 0.7537 -4.5663 -4.7776 41 1 -1.1583 -3.5104 -8.9100 42 1 3.1076 -3.2908 -8.6085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053629906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:55 Heat of formation + Delta-G solvation = -13.465889 kcal Electronic energy + Delta-G solvation = -27002.946786 eV Core-core repulsion = 22900.674962 eV Total energy + Delta-G solvation = -4102.271823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.68230 -41.50602 -40.07142 -39.05839 -36.65445 -34.62868 -32.19086 -31.96541 -31.10685 -30.21515 -28.81843 -26.93650 -24.79629 -24.38889 -22.84126 -21.56094 -21.47064 -20.90473 -20.46542 -19.18654 -19.09341 -16.92059 -16.50725 -16.37647 -16.09922 -15.92102 -15.63126 -15.14043 -15.01765 -14.79763 -14.46026 -14.19807 -13.87516 -13.77215 -13.61426 -13.46011 -13.31443 -13.10799 -12.48460 -12.35179 -11.92576 -11.88076 -11.51113 -11.31137 -11.10186 -11.07413 -10.83766 -10.50978 -10.25863 -10.13176 -9.82723 -9.51592 -9.28609 -9.14528 -8.85462 -8.71828 -8.52316 -6.89487 -5.76305 -3.08542 1.12193 2.19715 2.66068 2.90190 3.18729 3.38951 3.42592 3.44829 3.87938 4.29319 4.43508 4.58709 4.65042 4.73627 4.75373 4.93758 5.02004 5.08838 5.19858 5.31456 5.36156 5.45090 5.50155 5.58802 5.66017 5.71533 5.82814 5.98374 6.05108 6.14271 6.18544 6.27142 6.33359 6.48625 6.58414 6.60767 6.89989 6.91334 7.18812 7.32578 7.49786 7.71990 7.98085 8.00587 9.02966 9.70285 10.62655 11.41242 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003481 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.905371 B = 8041.039412 C = 9991.798756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.057 3.943 12 C 0.112 3.888 13 C -0.136 4.136 14 C -0.144 4.144 15 C 0.062 3.938 16 H 0.072 0.928 17 C 0.125 3.875 18 N -0.718 5.718 19 C 0.589 3.411 20 O -0.527 6.527 21 C -0.022 4.022 22 C -0.132 4.132 23 C 0.001 3.999 24 F -0.128 7.128 25 C 0.002 3.998 26 N -0.525 5.525 27 H 0.428 0.572 28 O -0.333 6.333 29 H 0.254 0.746 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.399 0.601 41 H 0.160 0.840 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -14.790 -10.798 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.174 4.174 14 C -0.183 4.183 15 C 0.004 3.996 16 H 0.089 0.911 17 C 0.001 3.999 18 N -0.369 5.369 19 C 0.375 3.625 20 O -0.403 6.403 21 C -0.137 4.137 22 C -0.159 4.159 23 C -0.025 4.025 24 F -0.107 7.107 25 C -0.135 4.135 26 N -0.122 5.122 27 H 0.267 0.733 28 O -0.251 6.251 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.233 0.767 41 H 0.178 0.822 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.883 -14.281 -10.920 18.000 hybrid contribution 1.262 0.863 0.465 1.598 sum 2.145 -13.418 -10.456 17.145 Atomic orbital electron populations 1.69809 1.05010 1.25456 1.56255 1.24769 0.95662 0.97442 1.02386 0.86208 0.78488 0.83208 0.77876 1.21119 1.21486 1.21180 1.18831 0.89995 0.81402 1.44303 0.90276 1.45423 1.02400 0.99053 1.85914 1.22347 0.89432 0.89360 0.96122 1.23379 0.98208 0.95834 0.80953 1.22695 0.94992 0.87284 0.96514 1.22881 0.98767 0.97558 0.98242 1.23194 0.99261 1.01731 0.94065 1.23256 0.94163 0.88827 0.93371 0.91060 1.21620 0.92296 1.01573 0.84379 1.45740 1.10906 1.69629 1.10622 1.16897 0.87180 0.77228 0.81165 1.90861 1.14145 1.53085 1.82209 1.20314 0.82324 1.14413 0.96608 1.21303 0.99038 1.04001 0.91523 1.16467 0.93955 1.11480 0.80598 1.91453 1.96758 1.89851 1.32606 1.21782 0.99485 1.07171 0.85047 1.41772 1.06428 1.52124 1.11875 0.73310 1.88430 1.78371 1.39081 1.19236 0.93589 0.94729 0.90519 0.93896 0.94038 0.90782 0.89740 0.89831 0.90160 0.90058 0.90005 0.76660 0.82244 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.51 55.49 0.64 -26.96 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.18 10.74 -15.06 -0.16 -6.34 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.54 3.79 -184.77 -0.70 -16.24 16 10 C 0.15 3.57 6.87 -8.07 -0.06 3.52 16 11 C 0.06 1.03 1.74 -90.58 -0.16 0.87 16 12 C 0.11 2.24 8.21 -8.06 -0.07 2.18 16 13 C -0.14 -1.76 6.39 -25.07 -0.16 -1.92 16 14 C -0.14 -1.58 6.58 -24.35 -0.16 -1.74 16 15 C 0.06 0.76 3.48 -25.67 -0.09 0.67 16 16 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 17 C 0.12 1.53 5.39 -4.04 -0.02 1.51 16 18 N -0.72 -8.62 5.53 -61.63 -0.34 -8.96 16 19 C 0.59 8.10 7.79 -12.86 -0.10 8.00 16 20 O -0.53 -8.98 16.88 5.19 0.09 -8.89 16 21 C -0.02 -0.26 7.05 -81.98 -0.58 -0.84 16 22 C -0.13 -1.61 10.66 -39.06 -0.42 -2.03 16 23 C 0.00 0.01 7.98 -39.91 -0.32 -0.31 16 24 F -0.13 -1.54 17.32 2.25 0.04 -1.50 16 25 C 0.00 0.02 11.90 -16.78 -0.20 -0.18 16 26 N -0.53 -4.61 6.00 -9.31 -0.06 -4.66 16 27 H 0.43 2.60 8.19 -40.82 -0.33 2.27 16 28 O -0.33 -5.87 10.84 -35.23 -0.38 -6.26 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.04 0.80 7.95 -51.93 -0.41 0.39 16 31 H 0.08 2.05 7.15 -51.93 -0.37 1.68 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.78 8.13 -51.93 -0.42 0.35 16 34 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 35 H 0.08 1.07 7.81 -51.93 -0.41 0.66 16 36 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.40 4.03 7.60 -40.82 -0.31 3.72 16 41 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -35.70 359.00 -8.51 -44.21 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.60 Total: 3.41 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.58 Total: 3.13 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.46 Total: -56.82 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.29 Total: -15.15 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.70 -8.51 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053629906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.748 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds