Wall clock time and date at job start Tue Mar 31 2020 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99519 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00001 * 3 2 1 5 5 H 1.48496 * 109.47499 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46773 * 120.00442 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00430 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.47207 * 135.97404 * 359.63524 * 9 7 2 11 11 C 1.52709 * 87.79745 * 153.79768 * 10 9 7 12 12 C 1.47216 * 135.97453 * 180.02562 * 9 7 2 13 13 C 1.53652 * 115.24462 * 140.76912 * 11 10 9 14 14 C 1.55489 * 101.96930 * 111.31018 * 13 11 10 15 15 C 1.55007 * 101.04245 * 33.48356 * 14 13 11 16 16 H 1.09001 * 110.30264 * 82.89922 * 15 14 13 17 17 C 1.53003 * 110.38583 * 205.00697 * 15 14 13 18 18 N 1.46493 * 109.47445 * 182.26436 * 17 15 14 19 19 C 1.34775 * 120.00201 * 179.97438 * 18 17 15 20 20 O 1.21702 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.46658 * 120.00304 * 179.97438 * 19 18 17 22 22 C 1.37926 * 126.21522 * 179.68329 * 21 19 18 23 23 C 1.39926 * 107.10798 * 179.88395 * 22 21 19 24 24 F 1.35109 * 126.08057 * 180.14554 * 23 22 21 25 25 C 1.35562 * 107.84459 * 0.39173 * 23 22 21 26 26 N 1.35747 * 108.83337 * 359.75760 * 25 23 22 27 27 H 0.96999 * 125.68021 * 179.97438 * 26 25 23 28 28 O 1.42391 * 116.11563 * 269.27635 * 11 10 9 29 29 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.50153 * 268.53354 * 10 9 7 31 31 H 1.08999 * 113.49942 * 39.06550 * 10 9 7 32 32 H 1.08999 * 113.49574 * 320.93154 * 12 9 7 33 33 H 1.09003 * 113.49859 * 91.46711 * 12 9 7 34 34 H 1.09000 * 110.93314 * 229.47863 * 13 11 10 35 35 H 1.09003 * 110.93393 * 353.13951 * 13 11 10 36 36 H 1.09002 * 111.10169 * 275.54599 * 14 13 11 37 37 H 1.08991 * 111.14131 * 151.44903 * 14 13 11 38 38 H 1.09008 * 109.46591 * 302.26344 * 17 15 14 39 39 H 1.08998 * 109.47251 * 62.25751 * 17 15 14 40 40 H 0.97005 * 120.00186 * 359.97438 * 18 17 15 41 41 H 1.08001 * 126.44939 * 0.03457 * 22 21 19 42 42 H 1.08004 * 125.58897 * 179.79394 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0895 -2.7932 0.0064 11 6 0.3398 -4.0910 -0.6743 12 6 1.6826 -3.8163 -0.0005 13 6 -0.3886 -5.3555 -0.1931 14 6 -1.2378 -5.7326 -1.4397 15 6 -0.3008 -5.2753 -2.5867 16 1 0.4431 -6.0440 -2.7966 17 6 -1.1122 -4.9651 -3.8462 18 7 -0.2038 -4.5875 -4.9317 19 6 -0.6983 -4.2697 -6.1445 20 8 -1.8995 -4.2967 -6.3380 21 6 0.2111 -3.8912 -7.2311 22 6 -0.1531 -3.5495 -8.5168 23 6 1.0244 -3.2597 -9.2149 24 9 1.1092 -2.8789 -10.5084 25 6 2.0653 -3.4343 -8.3643 26 7 1.5832 -3.8184 -7.1548 27 1 2.1170 -4.0099 -6.3679 28 8 0.3385 -4.0821 -2.0982 29 1 -0.4850 0.8401 0.0004 30 1 -0.4944 -2.9409 1.0076 31 1 -0.7246 -2.1646 -0.6176 32 1 2.5408 -4.0498 -0.6305 33 1 1.7631 -4.2441 0.9988 34 1 0.3219 -6.1462 0.0478 35 1 -1.0282 -5.1350 0.6616 36 1 -2.1772 -5.1799 -1.4565 37 1 -1.4164 -6.8069 -1.4834 38 1 -1.6807 -5.8479 -4.1387 39 1 -1.7977 -4.1423 -3.6433 40 1 0.7537 -4.5663 -4.7776 41 1 -1.1583 -3.5104 -8.9100 42 1 3.1076 -3.2908 -8.6085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053629906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:55 Heat of formation + Delta-G solvation = -40.294158 kcal Electronic energy + Delta-G solvation = -27004.110147 eV Core-core repulsion = 22900.674962 eV Total energy + Delta-G solvation = -4103.435184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.55851 -42.36996 -41.38463 -40.16686 -38.12649 -35.81314 -34.16441 -33.10547 -31.97046 -31.32703 -30.04382 -28.53665 -26.50938 -25.69119 -24.00322 -22.97153 -22.52326 -21.78084 -21.37448 -20.56867 -20.10851 -18.75191 -17.75117 -17.29960 -17.12761 -16.95934 -16.82339 -16.51581 -16.13636 -16.11661 -15.69893 -15.43673 -15.18948 -15.03088 -14.87079 -14.52137 -14.48263 -14.27560 -14.02048 -13.55841 -13.25344 -13.08228 -12.78845 -12.76189 -12.63539 -12.50081 -12.36107 -12.22195 -11.64203 -11.38917 -11.31448 -11.28444 -10.92533 -10.33491 -10.18746 -10.02975 -9.34930 -8.92941 -7.91322 -5.23918 0.21206 1.35388 1.41871 1.45793 1.52102 1.85542 1.98007 2.17175 2.45511 2.70491 3.30574 3.40672 3.42941 3.66561 3.71629 3.80440 3.83093 4.00813 4.02178 4.16122 4.22171 4.43179 4.50611 4.53399 4.62276 4.76208 4.84186 4.85084 4.91727 4.97636 5.01277 5.11899 5.17924 5.21929 5.30868 5.34289 5.36470 5.50656 5.69705 5.92243 6.21541 6.37819 6.39872 6.88911 6.98495 7.59698 8.60604 9.26180 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003481 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.905371 B = 8041.039412 C = 9991.798756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.228 4.228 8 H 0.085 0.915 9 N -0.639 5.639 10 C 0.145 3.855 11 C 0.081 3.919 12 C 0.112 3.888 13 C -0.127 4.127 14 C -0.137 4.137 15 C 0.062 3.938 16 H 0.106 0.894 17 C 0.125 3.875 18 N -0.710 5.710 19 C 0.587 3.413 20 O -0.570 6.570 21 C -0.043 4.043 22 C -0.146 4.146 23 C -0.030 4.030 24 F -0.135 7.135 25 C 0.037 3.963 26 N -0.509 5.509 27 H 0.442 0.558 28 O -0.365 6.365 29 H 0.246 0.754 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.410 0.590 41 H 0.151 0.849 42 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -17.086 -10.761 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.365 5.365 10 C 0.019 3.981 11 C 0.040 3.960 12 C -0.013 4.013 13 C -0.166 4.166 14 C -0.175 4.175 15 C 0.005 3.995 16 H 0.124 0.876 17 C 0.002 3.998 18 N -0.360 5.360 19 C 0.375 3.625 20 O -0.449 6.449 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.055 4.055 24 F -0.114 7.114 25 C -0.102 4.102 26 N -0.107 5.107 27 H 0.284 0.716 28 O -0.284 6.284 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.246 0.754 41 H 0.169 0.831 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.230 -16.635 -10.849 20.121 hybrid contribution 0.589 1.535 0.412 1.695 sum 3.819 -15.100 -10.437 18.749 Atomic orbital electron populations 1.70033 1.06587 1.25474 1.58239 1.25636 0.96504 1.00909 1.03128 0.85160 0.77149 0.78716 0.78377 1.20230 1.22234 1.19934 1.19280 0.90655 0.82961 1.42690 0.89736 1.45831 1.03815 1.00718 1.86101 1.22380 0.87943 0.91927 0.95853 1.22953 0.96495 0.95275 0.81286 1.22906 0.96442 0.84015 0.97934 1.22879 0.99215 0.95476 0.98989 1.23236 0.98036 1.04169 0.92040 1.23551 0.95064 0.87669 0.93259 0.87625 1.21630 0.92155 1.01239 0.84782 1.45686 1.11479 1.68828 1.10019 1.17138 0.86895 0.76629 0.81832 1.90830 1.15959 1.55145 1.82997 1.19973 0.83555 1.16242 0.95933 1.21422 0.99441 1.04273 0.92205 1.16662 0.94469 1.13481 0.80853 1.91428 1.96784 1.90115 1.33104 1.22396 1.00615 1.03403 0.83760 1.41775 1.05299 1.51029 1.12626 0.71572 1.88391 1.78938 1.42135 1.18968 0.94518 0.95152 0.95364 0.93127 0.91781 0.87524 0.89474 0.90887 0.85940 0.87848 0.93265 0.75428 0.83133 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 11.51 21.65 0.25 -59.51 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.23 -13.06 10.74 84.03 0.90 -12.16 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.64 -33.28 3.79 -739.55 -2.80 -36.08 16 10 C 0.15 6.95 6.87 83.38 0.57 7.53 16 11 C 0.08 2.81 1.74 -10.76 -0.02 2.79 16 12 C 0.11 4.31 8.21 83.39 0.68 5.00 16 13 C -0.13 -2.86 6.39 31.67 0.20 -2.66 16 14 C -0.14 -2.52 6.58 32.14 0.21 -2.31 16 15 C 0.06 1.35 3.48 31.28 0.11 1.45 16 16 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 17 C 0.13 2.95 5.39 86.38 0.47 3.41 16 18 N -0.71 -16.39 5.53 -467.10 -2.58 -18.97 16 19 C 0.59 16.27 7.79 86.44 0.67 16.95 16 20 O -0.57 -20.14 16.88 -4.35 -0.07 -20.22 16 21 C -0.04 -1.00 7.05 40.36 0.28 -0.71 16 22 C -0.15 -3.63 10.66 22.61 0.24 -3.39 16 23 C -0.03 -0.64 7.98 22.06 0.18 -0.47 16 24 F -0.14 -3.17 17.32 44.97 0.78 -2.39 16 25 C 0.04 0.54 11.90 83.47 0.99 1.53 16 26 N -0.51 -7.82 6.00 -183.38 -1.10 -8.92 16 27 H 0.44 4.12 8.19 -92.71 -0.76 3.36 16 28 O -0.37 -12.47 10.84 -148.98 -1.61 -14.08 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.03 1.45 7.95 -2.39 -0.02 1.43 16 31 H 0.03 1.60 7.15 -2.39 -0.02 1.58 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 34 H 0.11 1.79 8.13 -2.39 -0.02 1.77 16 35 H 0.09 1.96 7.81 -2.39 -0.02 1.94 16 36 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 37 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 7.54 7.60 -92.70 -0.70 6.83 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.23 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -83.00 359.00 0.45 -82.55 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.39 Total: 15.53 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.96 Total: 13.38 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.24 Total: -123.49 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.69 Total: -34.30 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -83.00 0.45 -82.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053629906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.257 kcal (2) G-P(sol) polarization free energy of solvation -83.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds