Wall clock time and date at job start Tue Mar 31 2020 14:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99884 * 2 1 4 4 H 1.48505 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47494 * 299.99798 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99886 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00253 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.46639 * 126.55979 * 359.97438 * 9 7 2 11 11 C 1.50782 * 107.70050 * 180.02562 * 10 9 7 12 12 C 1.38447 * 131.20554 * 179.97438 * 11 10 9 13 13 C 1.38140 * 120.10141 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.96581 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.02012 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47324 * 90.00016 * 15 14 13 17 17 C 1.34781 * 120.00146 * 180.02562 * 16 15 14 18 18 O 1.21553 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.47844 * 120.00008 * 179.97438 * 17 16 15 20 20 C 1.40021 * 120.55812 * 180.27557 * 19 17 16 21 21 C 1.38356 * 118.28930 * 180.26824 * 20 19 17 22 22 C 1.38352 * 119.30108 * 359.45848 * 21 20 19 23 23 N 1.31932 * 121.08143 * 0.27994 * 22 21 20 24 24 C 1.31691 * 121.87487 * 0.02562 * 23 22 21 25 25 C 1.38149 * 119.96068 * 0.27342 * 14 13 12 26 26 C 1.38072 * 108.85993 * 0.02562 * 11 10 9 27 27 C 1.46632 * 126.56644 * 179.97438 * 9 7 2 28 28 H 0.97004 * 120.00243 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.81057 * 60.45785 * 10 9 7 30 30 H 1.08996 * 109.81697 * 299.55338 * 10 9 7 31 31 H 1.08000 * 119.94336 * 0.02562 * 12 11 10 32 32 H 1.08004 * 120.01568 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47013 * 329.99595 * 15 14 13 34 34 H 1.09005 * 109.47106 * 209.99886 * 15 14 13 35 35 H 0.96999 * 120.00497 * 359.97438 * 16 15 14 36 36 H 1.08004 * 120.85991 * 0.02562 * 20 19 17 37 37 H 1.08002 * 120.35338 * 179.74185 * 21 20 19 38 38 H 1.08003 * 119.46505 * 180.25792 * 22 21 20 39 39 H 1.08005 * 119.71404 * 180.02562 * 24 23 22 40 40 H 1.07999 * 119.94718 * 179.72036 * 25 14 13 41 41 H 1.09000 * 109.81456 * 60.44712 * 27 9 7 42 42 H 1.08997 * 109.81278 * 299.54333 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1312 -2.5557 0.0005 11 6 -0.4225 -4.0351 0.0012 12 6 -1.6207 -4.7287 0.0019 13 6 -1.6215 -6.1101 0.0029 14 6 -0.4242 -6.8014 0.0027 15 6 -0.4237 -8.3084 0.0032 16 7 -0.4241 -8.7972 -1.3777 17 6 -0.4242 -10.1224 -1.6235 18 8 -0.4245 -10.9120 -0.6993 19 6 -0.4252 -10.6157 -3.0172 20 6 -0.4311 -11.9899 -3.2860 21 6 -0.4261 -12.3996 -4.6075 22 6 -0.4268 -11.4477 -5.6115 23 7 -0.4266 -10.1591 -5.3283 24 6 -0.4254 -9.7199 -4.0868 25 6 0.7717 -6.1098 0.0072 26 6 0.7733 -4.7254 0.0021 27 6 1.9088 -3.7335 0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5560 -2.0956 -0.8916 30 1 -0.5561 -2.0954 0.8925 31 1 -2.5561 -4.1889 0.0016 32 1 -2.5570 -6.6498 0.0039 33 1 -1.3134 -8.6718 0.5176 34 1 0.4666 -8.6712 0.5169 35 1 -0.4250 -8.1672 -2.1153 36 1 -0.4356 -12.7115 -2.4824 37 1 -0.4262 -13.4514 -4.8528 38 1 -0.4270 -11.7646 -6.6440 39 1 -0.4258 -8.6570 -3.8950 40 1 1.7069 -6.6500 0.0116 41 1 2.5198 -3.8713 0.8926 42 1 2.5196 -3.8713 -0.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054250811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:07 Heat of formation + Delta-G solvation = 60.499809 kcal Electronic energy + Delta-G solvation = -25143.379914 eV Core-core repulsion = 21475.084708 eV Total energy + Delta-G solvation = -3668.295205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93783 -39.82384 -39.10132 -36.44096 -34.70604 -32.93666 -32.50014 -31.93387 -31.03425 -29.73117 -27.59320 -26.13065 -25.14929 -24.17249 -23.66225 -22.07396 -21.00419 -20.46756 -20.19254 -18.45706 -17.22252 -17.05775 -16.86390 -15.72786 -15.67134 -15.50336 -15.27118 -14.74702 -14.58205 -14.33938 -14.26571 -14.02900 -13.76635 -13.50043 -13.25243 -13.06449 -12.63812 -12.52023 -12.00123 -11.89362 -11.71524 -11.59334 -11.11232 -10.88716 -10.59476 -10.51150 -10.36173 -10.25055 -10.14312 -9.84575 -9.83287 -9.69476 -9.29769 -8.99874 -8.47055 -8.07263 -6.89413 -5.85268 -3.18630 0.23067 0.77488 1.50714 1.69617 2.54793 2.96023 3.34909 3.40255 3.42974 3.46408 3.86835 4.07674 4.32794 4.37518 4.38930 4.48255 4.57115 4.67904 4.91648 4.95666 5.14862 5.19948 5.26578 5.39915 5.44354 5.53364 5.55692 5.57981 5.67752 5.81019 5.97732 6.05787 6.07606 6.14023 6.44857 6.49795 6.51649 6.71437 6.73219 7.00794 7.19646 7.28735 7.30502 7.42114 7.48845 7.65496 7.87582 8.09384 9.07667 9.67513 10.34181 11.28937 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002240 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.391511 B =12497.731685 C =13078.456400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.084 0.916 9 N -0.601 5.601 10 C 0.205 3.795 11 C -0.079 4.079 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.135 4.135 15 C 0.171 3.829 16 N -0.716 5.716 17 C 0.562 3.438 18 O -0.537 6.537 19 C -0.186 4.186 20 C -0.017 4.017 21 C -0.181 4.181 22 C 0.120 3.880 23 N -0.486 5.486 24 C 0.136 3.864 25 C -0.083 4.083 26 C -0.106 4.106 27 C 0.175 3.825 28 H 0.255 0.745 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -22.697 -7.103 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.080 3.920 11 C -0.080 4.080 12 C -0.130 4.130 13 C -0.121 4.121 14 C -0.136 4.136 15 C 0.048 3.952 16 N -0.368 5.368 17 C 0.348 3.652 18 O -0.415 6.415 19 C -0.192 4.192 20 C -0.044 4.044 21 C -0.200 4.200 22 C -0.036 4.036 23 N -0.194 5.194 24 C -0.022 4.022 25 C -0.102 4.102 26 C -0.107 4.107 27 C 0.049 3.951 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.375 -22.390 -7.094 23.728 hybrid contribution 0.362 0.598 0.341 0.778 sum -3.013 -21.791 -6.753 23.012 Atomic orbital electron populations 1.69929 1.04991 1.25411 1.56662 1.24844 0.95833 0.97909 1.01819 0.85947 0.78706 0.83199 0.77319 1.20348 1.21587 1.21603 1.19027 0.90516 0.81412 1.44362 0.89778 1.43970 1.01197 0.99870 1.87710 1.19753 0.85644 0.84685 1.01881 1.21570 0.92961 0.99313 0.94182 1.20506 0.97325 0.93395 1.01823 1.20826 0.96928 0.93868 1.00488 1.19436 0.93568 0.93621 1.06933 1.20152 1.03012 0.89926 0.82079 1.46103 1.74550 1.06445 1.09688 1.18046 0.76633 0.82502 0.88027 1.90785 1.49996 1.55381 1.45382 1.21041 1.07924 0.95587 0.94611 1.21762 0.90426 0.94758 0.97454 1.22197 1.02839 1.01839 0.93171 1.23064 0.92075 0.88154 1.00341 1.67744 1.12461 1.17418 1.21816 1.23066 0.91846 1.00061 0.87240 1.20308 0.97148 0.92512 1.00225 1.20729 0.97046 0.93366 0.99549 1.19709 0.92294 0.84331 0.98718 0.93488 0.91719 0.91735 0.86058 0.86275 0.90516 0.90522 0.76139 0.83458 0.83914 0.82120 0.82263 0.86486 0.94564 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.44 55.49 0.58 -25.84 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.34 3.41 -175.68 -0.60 -15.94 16 10 C 0.20 4.93 5.39 -5.08 -0.03 4.91 16 11 C -0.08 -1.54 6.22 -104.57 -0.65 -2.19 16 12 C -0.11 -1.78 10.05 -39.54 -0.40 -2.18 16 13 C -0.10 -1.35 9.70 -39.61 -0.38 -1.74 16 14 C -0.14 -1.73 5.25 -104.65 -0.55 -2.28 16 15 C 0.17 1.88 5.80 -5.20 -0.03 1.85 16 16 N -0.72 -7.21 5.50 -62.43 -0.34 -7.55 16 17 C 0.56 6.34 7.78 -12.33 -0.10 6.25 16 18 O -0.54 -7.73 16.42 5.32 0.09 -7.64 16 19 C -0.19 -1.77 5.89 -104.82 -0.62 -2.39 16 20 C -0.02 -0.14 9.72 -38.87 -0.38 -0.52 16 21 C -0.18 -1.12 10.10 -39.50 -0.40 -1.52 16 22 C 0.12 0.84 11.17 -17.47 -0.20 0.65 16 23 N -0.49 -4.63 10.35 -12.91 -0.13 -4.76 16 24 C 0.14 1.22 10.71 -17.13 -0.18 1.04 16 25 C -0.08 -1.22 9.70 -39.54 -0.38 -1.60 16 26 C -0.11 -1.95 6.22 -104.57 -0.65 -2.60 16 27 C 0.18 3.67 7.25 -5.09 -0.04 3.63 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.07 1.70 7.49 -51.93 -0.39 1.32 16 30 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.40 3.45 6.53 -40.82 -0.27 3.18 16 36 H 0.15 1.13 7.74 -52.48 -0.41 0.72 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.16 1.15 6.42 -52.48 -0.34 0.81 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -32.62 358.31 -10.39 -43.02 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.13 Total: 2.06 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -5.23 Total: -5.33 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.50 Total: -54.09 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.62 -10.39 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054250811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.518 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds