Wall clock time and date at job start Tue Mar 31 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99884 * 2 1 4 4 H 1.48505 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47494 * 299.99798 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99886 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00253 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.46639 * 126.55979 * 359.97438 * 9 7 2 11 11 C 1.50782 * 107.70050 * 180.02562 * 10 9 7 12 12 C 1.38447 * 131.20554 * 179.97438 * 11 10 9 13 13 C 1.38140 * 120.10141 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.96581 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.02012 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47324 * 90.00016 * 15 14 13 17 17 C 1.34781 * 120.00146 * 180.02562 * 16 15 14 18 18 O 1.21553 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.47844 * 120.00008 * 179.97438 * 17 16 15 20 20 C 1.40021 * 120.55812 * 180.27557 * 19 17 16 21 21 C 1.38356 * 118.28930 * 180.26824 * 20 19 17 22 22 C 1.38352 * 119.30108 * 359.45848 * 21 20 19 23 23 N 1.31932 * 121.08143 * 0.27994 * 22 21 20 24 24 C 1.31691 * 121.87487 * 0.02562 * 23 22 21 25 25 C 1.38149 * 119.96068 * 0.27342 * 14 13 12 26 26 C 1.38072 * 108.85993 * 0.02562 * 11 10 9 27 27 C 1.46632 * 126.56644 * 179.97438 * 9 7 2 28 28 H 0.97004 * 120.00243 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.81057 * 60.45785 * 10 9 7 30 30 H 1.08996 * 109.81697 * 299.55338 * 10 9 7 31 31 H 1.08000 * 119.94336 * 0.02562 * 12 11 10 32 32 H 1.08004 * 120.01568 * 179.97438 * 13 12 11 33 33 H 1.09003 * 109.47013 * 329.99595 * 15 14 13 34 34 H 1.09005 * 109.47106 * 209.99886 * 15 14 13 35 35 H 0.96999 * 120.00497 * 359.97438 * 16 15 14 36 36 H 1.08004 * 120.85991 * 0.02562 * 20 19 17 37 37 H 1.08002 * 120.35338 * 179.74185 * 21 20 19 38 38 H 1.08003 * 119.46505 * 180.25792 * 22 21 20 39 39 H 1.08005 * 119.71404 * 180.02562 * 24 23 22 40 40 H 1.07999 * 119.94718 * 179.72036 * 25 14 13 41 41 H 1.09000 * 109.81456 * 60.44712 * 27 9 7 42 42 H 1.08997 * 109.81278 * 299.54333 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1312 -2.5557 0.0005 11 6 -0.4225 -4.0351 0.0012 12 6 -1.6207 -4.7287 0.0019 13 6 -1.6215 -6.1101 0.0029 14 6 -0.4242 -6.8014 0.0027 15 6 -0.4237 -8.3084 0.0032 16 7 -0.4241 -8.7972 -1.3777 17 6 -0.4242 -10.1224 -1.6235 18 8 -0.4245 -10.9120 -0.6993 19 6 -0.4252 -10.6157 -3.0172 20 6 -0.4311 -11.9899 -3.2860 21 6 -0.4261 -12.3996 -4.6075 22 6 -0.4268 -11.4477 -5.6115 23 7 -0.4266 -10.1591 -5.3283 24 6 -0.4254 -9.7199 -4.0868 25 6 0.7717 -6.1098 0.0072 26 6 0.7733 -4.7254 0.0021 27 6 1.9088 -3.7335 0.0005 28 1 -0.4851 0.8401 -0.0004 29 1 -0.5560 -2.0956 -0.8916 30 1 -0.5561 -2.0954 0.8925 31 1 -2.5561 -4.1889 0.0016 32 1 -2.5570 -6.6498 0.0039 33 1 -1.3134 -8.6718 0.5176 34 1 0.4666 -8.6712 0.5169 35 1 -0.4250 -8.1672 -2.1153 36 1 -0.4356 -12.7115 -2.4824 37 1 -0.4262 -13.4514 -4.8528 38 1 -0.4270 -11.7646 -6.6440 39 1 -0.4258 -8.6570 -3.8950 40 1 1.7069 -6.6500 0.0116 41 1 2.5198 -3.8713 0.8926 42 1 2.5196 -3.8713 -0.8916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054250811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:06 Heat of formation + Delta-G solvation = 40.033071 kcal Electronic energy + Delta-G solvation = -25144.267418 eV Core-core repulsion = 21475.084708 eV Total energy + Delta-G solvation = -3669.182710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.65905 -41.08555 -39.98241 -37.89272 -35.86591 -34.16743 -33.54953 -32.92401 -32.15127 -31.29862 -29.00907 -27.72987 -26.41815 -25.00554 -24.38782 -23.57481 -22.11090 -21.79480 -21.44159 -19.22262 -19.00851 -17.87186 -17.54504 -17.21926 -16.60282 -16.46172 -16.28493 -16.06651 -15.98729 -15.87220 -15.43193 -15.02505 -14.67867 -14.54056 -14.47059 -14.10467 -13.58606 -13.48562 -13.47657 -13.34256 -13.17359 -13.04404 -13.02519 -12.73293 -12.06011 -11.99482 -11.84149 -11.65786 -11.42227 -10.97967 -10.94065 -10.48702 -10.35582 -10.07805 -9.72711 -9.60034 -8.85837 -7.94488 -5.31367 -0.38848 0.20863 0.25338 0.44758 1.45649 1.47160 1.57852 1.78356 2.08729 2.43924 2.83321 2.84536 3.28141 3.31269 3.45231 3.53278 3.72298 3.78492 3.81351 3.94387 3.96540 4.04336 4.13590 4.33735 4.44647 4.49978 4.63307 4.67663 4.72670 4.77846 4.83476 4.96702 5.00944 5.11573 5.17280 5.26576 5.28901 5.31703 5.44397 5.51522 5.55690 5.58541 5.86018 6.03867 6.09070 6.39862 6.84907 6.99683 7.05819 7.64482 8.32163 9.18878 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002240 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.391511 B =12497.731685 C =13078.456400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.625 5.625 10 C 0.221 3.779 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.087 4.087 14 C -0.110 4.110 15 C 0.175 3.825 16 N -0.709 5.709 17 C 0.565 3.435 18 O -0.572 6.572 19 C -0.201 4.201 20 C -0.028 4.028 21 C -0.169 4.169 22 C 0.117 3.883 23 N -0.514 5.514 24 C 0.131 3.869 25 C -0.075 4.075 26 C -0.117 4.117 27 C 0.171 3.829 28 H 0.251 0.749 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.411 0.589 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.141 0.859 41 H 0.041 0.959 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -25.635 -8.028 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.095 3.905 11 C -0.112 4.112 12 C -0.129 4.129 13 C -0.105 4.105 14 C -0.111 4.111 15 C 0.053 3.947 16 N -0.360 5.360 17 C 0.353 3.647 18 O -0.453 6.453 19 C -0.206 4.206 20 C -0.054 4.054 21 C -0.189 4.189 22 C -0.039 4.039 23 N -0.222 5.222 24 C -0.027 4.027 25 C -0.094 4.094 26 C -0.117 4.117 27 C 0.046 3.954 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.249 0.751 36 H 0.167 0.833 37 H 0.194 0.806 38 H 0.207 0.793 39 H 0.187 0.813 40 H 0.159 0.841 41 H 0.058 0.942 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.214 -25.342 -8.034 26.779 hybrid contribution 0.298 1.327 0.572 1.476 sum -2.916 -24.015 -7.462 25.316 Atomic orbital electron populations 1.70160 1.06479 1.25747 1.57689 1.25771 0.96766 1.01375 1.01957 0.84879 0.78192 0.78616 0.76819 1.18681 1.21628 1.21724 1.19439 0.91146 0.82627 1.43903 0.89158 1.44279 1.02104 1.01235 1.87556 1.19285 0.84873 0.87952 0.98343 1.21202 0.95156 0.96499 0.98322 1.20688 0.96360 0.94681 1.01202 1.21167 0.98662 0.92525 0.98148 1.19620 0.92723 0.94643 1.04088 1.20099 1.03800 0.88081 0.82733 1.45976 1.74062 1.06417 1.09593 1.18256 0.75726 0.82339 0.88395 1.90767 1.51847 1.56194 1.46491 1.20953 1.09688 0.96374 0.93629 1.21970 0.90505 0.94370 0.98600 1.22525 1.00968 1.03421 0.91945 1.23633 0.90660 0.87520 1.02040 1.67779 1.13539 1.18934 1.21990 1.23209 0.91788 1.00583 0.87105 1.20512 0.99057 0.90768 0.99022 1.20568 0.95178 0.94503 1.01500 1.19810 0.93456 0.83193 0.98939 0.94016 0.95707 0.95872 0.85132 0.82671 0.89530 0.90181 0.75139 0.83309 0.80626 0.79267 0.81277 0.84109 0.94153 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.44 21.65 0.23 -57.27 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.99 45.57 29.55 68.60 2.03 47.60 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.24 -13.80 10.32 84.03 0.87 -12.93 16 8 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 9 N -0.63 -33.46 3.41 -709.71 -2.42 -35.88 16 10 C 0.22 11.37 5.39 85.63 0.46 11.84 16 11 C -0.11 -4.41 6.22 -19.83 -0.12 -4.54 16 12 C -0.11 -3.43 10.05 22.30 0.22 -3.20 16 13 C -0.09 -2.01 9.70 22.25 0.22 -1.80 16 14 C -0.11 -2.46 5.25 -19.88 -0.10 -2.56 16 15 C 0.18 3.25 5.80 85.63 0.50 3.75 16 16 N -0.71 -12.28 5.50 -469.71 -2.58 -14.87 16 17 C 0.57 11.65 7.78 86.79 0.68 12.33 16 18 O -0.57 -15.53 16.42 -3.88 -0.06 -15.59 16 19 C -0.20 -3.48 5.89 -19.99 -0.12 -3.59 16 20 C -0.03 -0.40 9.72 22.73 0.22 -0.18 16 21 C -0.17 -1.59 10.10 22.33 0.23 -1.36 16 22 C 0.12 1.32 11.17 84.70 0.95 2.27 16 23 N -0.51 -8.76 10.35 -194.75 -2.01 -10.77 16 24 C 0.13 2.13 10.71 85.02 0.91 3.04 16 25 C -0.07 -2.01 9.70 22.30 0.22 -1.80 16 26 C -0.12 -4.26 6.22 -19.83 -0.12 -4.39 16 27 C 0.17 7.31 7.25 85.63 0.62 7.93 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.03 1.43 7.49 -2.39 -0.02 1.41 16 30 H 0.02 1.34 7.49 -2.39 -0.02 1.33 16 31 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.08 1.52 8.08 -2.38 -0.02 1.50 16 35 H 0.41 5.87 6.53 -92.71 -0.61 5.27 16 36 H 0.15 2.04 7.74 -2.91 -0.02 2.02 16 37 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 38 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.17 2.14 6.42 -2.91 -0.02 2.12 16 40 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.03 358.31 1.70 -73.33 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.45 Total: 11.95 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.08 Total: 1.51 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.79 Total: -118.79 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.06 Total: -15.59 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.03 1.70 -73.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054250811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.363 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds