Wall clock time and date at job start Tue Mar 31 2020 14:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00496 * 2 1 4 4 H 1.48505 * 109.46942 * 84.28473 * 3 2 1 5 5 H 1.48494 * 109.47043 * 204.28428 * 3 2 1 6 6 H 1.48498 * 109.46847 * 324.28371 * 3 2 1 7 7 C 1.38821 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 18.87923 * 7 2 1 9 9 N 1.36930 * 119.99883 * 198.88235 * 7 2 1 10 10 C 1.43427 * 120.63588 * 216.63103 * 9 7 2 11 11 C 1.54788 * 116.57333 * 269.49415 * 10 9 7 12 12 C 1.55186 * 108.79899 * 319.48523 * 11 10 9 13 13 O 1.39644 * 110.57285 * 322.07749 * 12 11 10 14 14 C 1.42384 * 108.63302 * 101.17234 * 13 12 11 15 15 H 1.08997 * 108.51242 * 28.48804 * 14 13 12 16 16 C 1.52995 * 108.61727 * 146.34698 * 14 13 12 17 17 N 1.46507 * 109.47068 * 304.23270 * 16 14 13 18 18 C 1.34778 * 120.00039 * 180.02562 * 17 16 14 19 19 O 1.21566 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.47719 * 119.99827 * 180.02562 * 18 17 16 21 21 C 1.40156 * 120.52953 * 179.73001 * 20 18 17 22 22 C 1.38152 * 118.32353 * 179.73527 * 21 20 18 23 23 C 1.38751 * 119.28409 * 0.51196 * 22 21 20 24 24 F 1.35102 * 119.49665 * 179.76965 * 23 22 21 25 25 N 1.32146 * 121.01677 * 359.74612 * 23 22 21 26 26 C 1.31693 * 121.83912 * 359.97438 * 25 23 22 27 27 C 1.46920 * 113.78406 * 267.45615 * 14 13 12 28 28 H 0.97004 * 119.99599 * 0.02562 * 1 2 3 29 29 H 1.09007 * 108.12501 * 31.10900 * 10 9 7 30 30 H 1.08996 * 108.13113 * 147.59370 * 10 9 7 31 31 H 1.09005 * 109.66341 * 199.65887 * 11 10 9 32 32 H 1.08994 * 109.55708 * 79.25129 * 11 10 9 33 33 H 1.09006 * 109.25907 * 201.79930 * 12 11 10 34 34 H 1.09003 * 109.25862 * 82.36226 * 12 11 10 35 35 H 1.08997 * 109.47508 * 64.23711 * 16 14 13 36 36 H 1.08999 * 109.46894 * 184.23774 * 16 14 13 37 37 H 0.97000 * 119.99747 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.84024 * 359.97008 * 21 20 18 39 39 H 1.07998 * 120.35902 * 180.28409 * 22 21 20 40 40 H 1.08001 * 119.69973 * 179.97438 * 26 25 23 41 41 H 1.09006 * 109.99089 * 297.48685 * 27 14 13 42 42 H 1.09004 * 109.98562 * 176.12451 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3771 2.1160 1.3932 5 1 3.6029 1.4081 -0.5758 6 1 1.5134 2.6147 -0.8173 7 6 2.0102 -1.2023 -0.0005 8 1 1.5136 -2.1122 -0.3036 9 7 3.3242 -1.2344 0.3832 10 6 4.2550 -2.1091 -0.2693 11 6 4.4211 -3.5223 0.3400 12 6 4.4237 -3.4026 1.8873 13 8 5.1066 -2.2528 2.2894 14 6 4.1523 -1.2489 2.6192 15 1 3.2399 -1.7376 2.9607 16 6 4.7101 -0.4024 3.7651 17 7 5.0511 -1.2722 4.8936 18 6 5.5628 -0.7423 6.0223 19 8 5.7409 0.4575 6.1041 20 6 5.9072 -1.6194 7.1599 21 6 6.4452 -1.0808 8.3367 22 6 6.7455 -1.9422 9.3742 23 6 6.5171 -3.3016 9.2155 24 9 6.8135 -4.1483 10.2256 25 7 6.0136 -3.7808 8.0916 26 6 5.7070 -2.9976 7.0782 27 6 3.8169 -0.3594 1.4990 28 1 -0.4850 0.8401 -0.0004 29 1 3.9397 -2.2273 -1.3060 30 1 5.2315 -1.6249 -0.2708 31 1 5.3631 -3.9574 0.0059 32 1 3.5921 -4.1555 0.0242 33 1 4.9118 -4.2785 2.3148 34 1 3.3955 -3.3540 2.2458 35 1 5.6039 0.1223 3.4276 36 1 3.9598 0.3231 4.0794 37 1 4.9087 -2.2295 4.8284 38 1 6.6170 -0.0188 8.4315 39 1 7.1570 -1.5621 10.2975 40 1 5.2976 -3.4264 6.1754 41 1 4.7037 0.1881 1.1795 42 1 3.0348 0.3383 1.7985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073550105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:16 Heat of formation + Delta-G solvation = -46.507798 kcal Electronic energy + Delta-G solvation = -27323.693103 eV Core-core repulsion = 23219.988475 eV Total energy + Delta-G solvation = -4103.704628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.50043 -40.94566 -39.74884 -38.85455 -35.37654 -35.03958 -33.19276 -32.72793 -31.92003 -31.32618 -29.00362 -26.26025 -25.71780 -24.64604 -24.06045 -22.62834 -21.50150 -20.91392 -19.76747 -18.76408 -18.07629 -17.81567 -17.13135 -16.57482 -16.45491 -15.89448 -15.60980 -15.42007 -15.18579 -14.96287 -14.53063 -14.20304 -14.07789 -13.86741 -13.58103 -13.50397 -13.28774 -13.08716 -12.86320 -12.66552 -12.47297 -12.09562 -11.63320 -11.32154 -10.84266 -10.65860 -10.60337 -10.57806 -10.32486 -10.15876 -10.01794 -9.87387 -9.66987 -9.58412 -9.18764 -9.11768 -8.69471 -6.98858 -6.08740 -3.53620 0.03045 0.56902 2.46248 2.90436 2.99581 3.23062 3.30489 3.41633 3.46801 3.90820 4.13683 4.21261 4.27043 4.42218 4.49115 4.63666 4.80920 5.01505 5.20636 5.23933 5.32176 5.34961 5.48434 5.49695 5.61750 5.69560 5.76218 5.89647 5.92891 5.97894 6.02186 6.16183 6.29711 6.35486 6.45510 6.46239 6.65819 6.81283 7.01821 7.30154 7.52114 7.90945 7.97557 8.30558 8.83352 9.58591 10.02654 11.06575 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003001 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.028666 B = 9328.263679 C =10112.488545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.266 1.266 6 H -0.299 1.299 7 C -0.271 4.271 8 H 0.082 0.918 9 N -0.598 5.598 10 C 0.159 3.841 11 C -0.170 4.170 12 C 0.060 3.940 13 O -0.355 6.355 14 C 0.062 3.938 15 H 0.075 0.925 16 C 0.113 3.887 17 N -0.709 5.709 18 C 0.562 3.438 19 O -0.535 6.535 20 C -0.194 4.194 21 C 0.011 3.989 22 C -0.200 4.200 23 C 0.327 3.673 24 F -0.108 7.108 25 N -0.515 5.515 26 C 0.175 3.825 27 C 0.100 3.900 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.401 0.599 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.048 0.952 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.956 -5.432 15.468 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.190 1.190 6 H -0.227 1.227 7 C -0.400 4.400 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.031 3.969 11 C -0.211 4.211 12 C -0.017 4.017 13 O -0.273 6.273 14 C 0.002 3.998 15 H 0.093 0.907 16 C -0.011 4.011 17 N -0.360 5.360 18 C 0.347 3.653 19 O -0.412 6.412 20 C -0.199 4.199 21 C -0.015 4.015 22 C -0.221 4.221 23 C 0.174 3.826 24 F -0.086 7.086 25 N -0.229 5.229 26 C 0.016 3.984 27 C -0.025 4.025 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.237 0.763 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.189 0.811 41 H 0.066 0.934 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.979 -5.351 15.439 20.868 hybrid contribution 0.193 0.963 0.187 1.000 sum 13.172 -4.388 15.626 20.903 Atomic orbital electron populations 1.69834 1.05945 1.26869 1.51600 1.25465 0.95141 0.97863 0.98142 0.86899 0.80711 0.84390 0.77325 1.21282 1.19043 1.22701 1.18803 0.84469 0.94266 1.42423 0.90094 1.44129 1.07402 1.44695 1.35732 1.20218 0.92581 0.89169 0.94976 1.23456 1.00524 1.01011 0.96087 1.22481 0.96528 0.87318 0.95387 1.87597 1.30966 1.22853 1.85918 1.22046 0.91512 0.91806 0.94414 0.90737 1.21853 1.01520 0.93093 0.84632 1.45807 1.64082 1.11679 1.14446 1.17832 0.77848 0.87466 0.82110 1.90806 1.53738 1.14710 1.81989 1.21108 1.06391 0.95268 0.97150 1.21663 0.88888 1.01533 0.89428 1.21855 1.06011 0.91745 1.02452 1.18426 0.94033 0.85632 0.84514 1.91657 1.89744 1.71460 1.55780 1.67030 1.14327 1.41227 1.00308 1.22787 0.91619 0.88621 0.95333 1.21345 0.98816 0.93776 0.88549 0.92564 0.93434 0.94986 0.92323 0.91939 0.91964 0.92257 0.90410 0.89849 0.76294 0.82199 0.82590 0.81101 0.93374 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.97 55.49 0.78 -25.63 16 2 C 0.03 0.95 5.27 -17.43 -0.09 0.86 16 3 Si 0.88 21.22 24.76 -169.99 -4.21 17.02 16 4 H -0.29 -6.61 6.75 56.52 0.38 -6.23 16 5 H -0.27 -6.34 7.08 56.52 0.40 -5.94 16 6 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.27 -7.13 9.96 -15.06 -0.15 -7.28 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 N -0.60 -13.23 2.20 -174.85 -0.39 -13.61 16 10 C 0.16 3.05 5.28 -4.73 -0.02 3.02 16 11 C -0.17 -2.67 6.74 -24.63 -0.17 -2.84 16 12 C 0.06 0.88 6.38 38.31 0.24 1.12 16 13 O -0.36 -5.45 9.34 -31.95 -0.30 -5.75 16 14 C 0.06 0.99 2.16 -29.65 -0.06 0.93 16 15 H 0.07 1.23 6.76 -51.93 -0.35 0.88 16 16 C 0.11 1.61 5.27 -4.04 -0.02 1.59 16 17 N -0.71 -8.43 5.35 -61.29 -0.33 -8.75 16 18 C 0.56 7.02 7.78 -12.39 -0.10 6.93 16 19 O -0.53 -8.44 16.42 5.31 0.09 -8.35 16 20 C -0.19 -1.92 5.89 -104.83 -0.62 -2.54 16 21 C 0.01 0.09 9.71 -38.89 -0.38 -0.29 16 22 C -0.20 -1.46 10.07 -39.42 -0.40 -1.86 16 23 C 0.33 3.10 8.41 -17.23 -0.14 2.96 16 24 F -0.11 -1.04 17.29 2.25 0.04 -1.00 16 25 N -0.51 -5.43 10.36 -13.22 -0.14 -5.57 16 26 C 0.17 1.60 10.71 -17.14 -0.18 1.41 16 27 C 0.10 1.98 3.45 -4.93 -0.02 1.96 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.05 0.94 7.98 -51.93 -0.41 0.53 16 30 H 0.03 0.60 7.99 -51.93 -0.41 0.18 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.92 6.66 -51.93 -0.35 0.57 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.40 3.90 6.25 -40.82 -0.26 3.64 16 38 H 0.16 1.20 7.73 -52.48 -0.41 0.79 16 39 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.17 1.17 6.42 -52.49 -0.34 0.83 16 41 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.08 1.79 4.56 -51.93 -0.24 1.55 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -31.54 345.25 -6.66 -38.20 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.30 Total: 2.27 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.11 Total: 5.98 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.08 Total: -53.57 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.21 Total: -14.10 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.21 Total: 17.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.54 -6.66 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073550105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.307 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds