Wall clock time and date at job start Tue Mar 31 2020 14:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00496 * 2 1 4 4 H 1.48505 * 109.46942 * 84.28473 * 3 2 1 5 5 H 1.48494 * 109.47043 * 204.28428 * 3 2 1 6 6 H 1.48498 * 109.46847 * 324.28371 * 3 2 1 7 7 C 1.38821 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 18.87923 * 7 2 1 9 9 N 1.36930 * 119.99883 * 198.88235 * 7 2 1 10 10 C 1.43427 * 120.63588 * 216.63103 * 9 7 2 11 11 C 1.54788 * 116.57333 * 269.49415 * 10 9 7 12 12 C 1.55186 * 108.79899 * 319.48523 * 11 10 9 13 13 O 1.39644 * 110.57285 * 322.07749 * 12 11 10 14 14 C 1.42384 * 108.63302 * 101.17234 * 13 12 11 15 15 H 1.08997 * 108.51242 * 28.48804 * 14 13 12 16 16 C 1.52995 * 108.61727 * 146.34698 * 14 13 12 17 17 N 1.46507 * 109.47068 * 304.23270 * 16 14 13 18 18 C 1.34778 * 120.00039 * 180.02562 * 17 16 14 19 19 O 1.21566 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.47719 * 119.99827 * 180.02562 * 18 17 16 21 21 C 1.40156 * 120.52953 * 179.73001 * 20 18 17 22 22 C 1.38152 * 118.32353 * 179.73527 * 21 20 18 23 23 C 1.38751 * 119.28409 * 0.51196 * 22 21 20 24 24 F 1.35102 * 119.49665 * 179.76965 * 23 22 21 25 25 N 1.32146 * 121.01677 * 359.74612 * 23 22 21 26 26 C 1.31693 * 121.83912 * 359.97438 * 25 23 22 27 27 C 1.46920 * 113.78406 * 267.45615 * 14 13 12 28 28 H 0.97004 * 119.99599 * 0.02562 * 1 2 3 29 29 H 1.09007 * 108.12501 * 31.10900 * 10 9 7 30 30 H 1.08996 * 108.13113 * 147.59370 * 10 9 7 31 31 H 1.09005 * 109.66341 * 199.65887 * 11 10 9 32 32 H 1.08994 * 109.55708 * 79.25129 * 11 10 9 33 33 H 1.09006 * 109.25907 * 201.79930 * 12 11 10 34 34 H 1.09003 * 109.25862 * 82.36226 * 12 11 10 35 35 H 1.08997 * 109.47508 * 64.23711 * 16 14 13 36 36 H 1.08999 * 109.46894 * 184.23774 * 16 14 13 37 37 H 0.97000 * 119.99747 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.84024 * 359.97008 * 21 20 18 39 39 H 1.07998 * 120.35902 * 180.28409 * 22 21 20 40 40 H 1.08001 * 119.69973 * 179.97438 * 26 25 23 41 41 H 1.09006 * 109.99089 * 297.48685 * 27 14 13 42 42 H 1.09004 * 109.98562 * 176.12451 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3771 2.1160 1.3932 5 1 3.6029 1.4081 -0.5758 6 1 1.5134 2.6147 -0.8173 7 6 2.0102 -1.2023 -0.0005 8 1 1.5136 -2.1122 -0.3036 9 7 3.3242 -1.2344 0.3832 10 6 4.2550 -2.1091 -0.2693 11 6 4.4211 -3.5223 0.3400 12 6 4.4237 -3.4026 1.8873 13 8 5.1066 -2.2528 2.2894 14 6 4.1523 -1.2489 2.6192 15 1 3.2399 -1.7376 2.9607 16 6 4.7101 -0.4024 3.7651 17 7 5.0511 -1.2722 4.8936 18 6 5.5628 -0.7423 6.0223 19 8 5.7409 0.4575 6.1041 20 6 5.9072 -1.6194 7.1599 21 6 6.4452 -1.0808 8.3367 22 6 6.7455 -1.9422 9.3742 23 6 6.5171 -3.3016 9.2155 24 9 6.8135 -4.1483 10.2256 25 7 6.0136 -3.7808 8.0916 26 6 5.7070 -2.9976 7.0782 27 6 3.8169 -0.3594 1.4990 28 1 -0.4850 0.8401 -0.0004 29 1 3.9397 -2.2273 -1.3060 30 1 5.2315 -1.6249 -0.2708 31 1 5.3631 -3.9574 0.0059 32 1 3.5921 -4.1555 0.0242 33 1 4.9118 -4.2785 2.3148 34 1 3.3955 -3.3540 2.2458 35 1 5.6039 0.1223 3.4276 36 1 3.9598 0.3231 4.0794 37 1 4.9087 -2.2295 4.8284 38 1 6.6170 -0.0188 8.4315 39 1 7.1570 -1.5621 10.2975 40 1 5.2976 -3.4264 6.1754 41 1 4.7037 0.1881 1.1795 42 1 3.0348 0.3383 1.7985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073550105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:15 Heat of formation + Delta-G solvation = -69.035822 kcal Electronic energy + Delta-G solvation = -27324.669992 eV Core-core repulsion = 23219.988475 eV Total energy + Delta-G solvation = -4104.681517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.20584 -41.77997 -40.94581 -39.87544 -36.99995 -36.18717 -34.01757 -33.89997 -33.74525 -32.24798 -30.43008 -27.54478 -27.29738 -25.48776 -24.95389 -24.05252 -22.80369 -21.88729 -21.33960 -19.52624 -19.03300 -18.91340 -18.45078 -17.85454 -17.37844 -17.26330 -16.87178 -16.39740 -16.21805 -16.06907 -15.78062 -15.66033 -15.13277 -14.77068 -14.68749 -14.46377 -14.40683 -14.21824 -14.10224 -14.00336 -13.93545 -13.66865 -13.11842 -13.02416 -12.47861 -12.29224 -11.88633 -11.78692 -11.60628 -11.46411 -11.29324 -11.25343 -10.82596 -10.74489 -10.44687 -10.38040 -10.09265 -8.83789 -8.20601 -5.61394 -0.69600 -0.06490 1.29581 1.43021 1.52861 1.60214 1.94033 2.32865 2.40207 2.54036 2.88047 2.96042 3.25798 3.28659 3.50793 3.63256 3.75818 3.91193 3.98555 4.14237 4.24690 4.32514 4.37564 4.44985 4.45745 4.51774 4.63772 4.69656 4.72839 4.75015 4.86108 4.93406 5.03744 5.18292 5.20360 5.25123 5.33778 5.34503 5.90820 6.17913 6.26758 6.32355 6.39039 6.92610 7.03111 7.57421 8.06063 8.98823 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003001 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.028666 B = 9328.263679 C =10112.488545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.019 4.019 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.310 1.310 7 C -0.253 4.253 8 H 0.047 0.953 9 N -0.610 5.610 10 C 0.151 3.849 11 C -0.163 4.163 12 C 0.059 3.941 13 O -0.350 6.350 14 C 0.074 3.926 15 H 0.070 0.930 16 C 0.122 3.878 17 N -0.701 5.701 18 C 0.566 3.434 19 O -0.571 6.571 20 C -0.203 4.203 21 C 0.012 3.988 22 C -0.182 4.182 23 C 0.315 3.685 24 F -0.111 7.111 25 N -0.539 5.539 26 C 0.179 3.821 27 C 0.097 3.903 28 H 0.263 0.737 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.413 0.587 38 H 0.170 0.830 39 H 0.188 0.812 40 H 0.191 0.809 41 H 0.057 0.943 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.323 -5.888 17.113 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.215 4.215 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.239 1.239 7 C -0.383 4.383 8 H 0.064 0.936 9 N -0.333 5.333 10 C 0.024 3.976 11 C -0.204 4.204 12 C -0.018 4.018 13 O -0.268 6.268 14 C 0.015 3.985 15 H 0.088 0.912 16 C -0.003 4.003 17 N -0.353 5.353 18 C 0.353 3.647 19 O -0.451 6.451 20 C -0.208 4.208 21 C -0.014 4.014 22 C -0.203 4.203 23 C 0.163 3.837 24 F -0.090 7.090 25 N -0.253 5.253 26 C 0.021 3.979 27 C -0.027 4.027 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.187 0.813 39 H 0.206 0.794 40 H 0.208 0.792 41 H 0.075 0.925 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.396 -5.856 17.101 23.743 hybrid contribution -0.499 0.987 -0.341 1.158 sum 14.896 -4.869 16.760 22.945 Atomic orbital electron populations 1.69952 1.07532 1.27428 1.54470 1.26029 0.95642 1.00923 0.98936 0.85953 0.79349 0.80397 0.77927 1.19508 1.18328 1.23881 1.18656 0.86036 0.92875 1.40716 0.93554 1.44205 1.06299 1.45685 1.37134 1.20394 0.92014 0.90797 0.94434 1.23366 1.01680 0.98284 0.97052 1.22588 0.96477 0.88292 0.94455 1.87612 1.30549 1.22833 1.85796 1.21681 0.91829 0.91511 0.93529 0.91246 1.21569 1.01148 0.92818 0.84718 1.45654 1.63778 1.12067 1.13775 1.18115 0.76928 0.87221 0.82440 1.90789 1.55352 1.16328 1.82649 1.20942 1.07806 0.95238 0.96823 1.21856 0.88244 1.02208 0.89116 1.22079 1.04586 0.90465 1.03169 1.18709 0.94247 0.86425 0.84332 1.91648 1.89789 1.71723 1.55873 1.67025 1.15265 1.41992 1.01031 1.23010 0.91068 0.88195 0.95652 1.21380 0.98346 0.93952 0.89009 0.92781 0.95059 0.94051 0.89656 0.92566 0.88089 0.93507 0.90603 0.90408 0.74893 0.81275 0.79445 0.79230 0.92491 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.36 13.97 21.65 0.30 -57.05 16 2 C -0.02 -1.06 5.27 84.86 0.45 -0.61 16 3 Si 0.94 44.29 24.76 68.60 1.70 45.98 16 4 H -0.27 -11.88 6.75 99.48 0.67 -11.21 16 5 H -0.26 -11.82 7.08 99.48 0.70 -11.11 16 6 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 7 C -0.25 -13.59 9.96 84.04 0.84 -12.75 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.74 16 9 N -0.61 -26.75 2.20 -707.10 -1.56 -28.31 16 10 C 0.15 5.62 5.28 87.56 0.46 6.08 16 11 C -0.16 -4.77 6.74 31.95 0.22 -4.56 16 12 C 0.06 1.54 6.38 72.73 0.46 2.01 16 13 O -0.35 -9.72 9.34 -137.23 -1.28 -11.00 16 14 C 0.07 2.26 2.16 28.71 0.06 2.32 16 15 H 0.07 2.22 6.76 -2.39 -0.02 2.20 16 16 C 0.12 3.27 5.27 86.38 0.45 3.73 16 17 N -0.70 -15.21 5.35 -466.09 -2.49 -17.70 16 18 C 0.57 13.15 7.78 86.75 0.67 13.82 16 19 O -0.57 -17.30 16.42 -3.92 -0.06 -17.36 16 20 C -0.20 -3.59 5.89 -20.00 -0.12 -3.71 16 21 C 0.01 0.17 9.71 22.72 0.22 0.39 16 22 C -0.18 -2.16 10.07 22.37 0.23 -1.94 16 23 C 0.32 5.32 8.41 84.77 0.71 6.03 16 24 F -0.11 -1.95 17.29 44.97 0.78 -1.18 16 25 N -0.54 -10.32 10.36 -195.73 -2.03 -12.35 16 26 C 0.18 2.88 10.71 85.02 0.91 3.79 16 27 C 0.10 3.72 3.45 83.79 0.29 4.01 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.03 1.24 7.98 -2.38 -0.02 1.22 16 30 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.05 1.36 6.66 -2.39 -0.02 1.34 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.41 6.93 6.25 -92.71 -0.58 6.35 16 38 H 0.17 2.14 7.73 -2.91 -0.02 2.12 16 39 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.19 2.08 6.42 -2.91 -0.02 2.06 16 41 H 0.06 2.08 8.09 -2.38 -0.02 2.06 16 42 H 0.07 2.78 4.56 -2.39 -0.01 2.77 16 Total: -1.00 -69.24 345.25 1.66 -67.58 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.45 Total: 12.77 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 5.86 Total: 18.61 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -5.78 Total: -115.42 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.35 Total: -28.36 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.70 Total: 45.98 kcal Total: -69.24 1.66 -67.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073550105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.451 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds