Wall clock time and date at job start Tue Mar 31 2020 14:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48499 * 109.47273 * 270.00008 * 3 2 1 5 5 H 1.48501 * 109.47222 * 29.99822 * 3 2 1 6 6 H 1.48505 * 109.47458 * 149.99474 * 3 2 1 7 7 C 1.38817 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00246 * 195.47231 * 7 2 1 9 9 N 1.36933 * 119.99646 * 15.46981 * 7 2 1 10 10 C 1.47506 * 118.75834 * 26.09472 * 9 7 2 11 11 C 1.53581 * 111.02772 * 138.37434 * 10 9 7 12 12 C 1.51545 * 109.57899 * 320.02443 * 11 10 9 13 13 O 1.42152 * 108.76262 * 91.39583 * 12 11 10 14 14 C 1.38009 * 119.44177 * 272.77746 * 13 12 11 15 15 H 1.09004 * 109.46909 * 303.43131 * 14 13 12 16 16 C 1.52994 * 109.47450 * 183.42901 * 14 13 12 17 17 N 1.46503 * 109.47202 * 64.99965 * 16 14 13 18 18 C 1.34767 * 120.00583 * 180.02562 * 17 16 14 19 19 O 1.21520 * 119.99530 * 0.02562 * 18 17 16 20 20 C 1.48161 * 120.00518 * 179.97438 * 18 17 16 21 21 C 1.39897 * 120.90798 * 179.97438 * 20 18 17 22 22 C 1.38038 * 119.06455 * 179.73169 * 21 20 18 23 23 N 1.31879 * 120.93890 * 359.97438 * 22 21 20 24 24 C 1.31965 * 122.01000 * 0.02562 * 23 22 21 25 25 F 1.35101 * 119.58639 * 179.97438 * 24 23 22 26 26 C 1.38529 * 120.82608 * 359.97438 * 24 23 22 27 27 C 1.45127 * 118.75846 * 206.09818 * 9 7 2 28 28 H 0.97000 * 119.99638 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.16966 * 17.97748 * 10 9 7 30 30 H 1.08995 * 109.12893 * 258.74502 * 10 9 7 31 31 H 1.08995 * 109.45185 * 199.99230 * 11 10 9 32 32 H 1.08999 * 109.45493 * 80.05149 * 11 10 9 33 33 H 1.09005 * 109.58377 * 331.61700 * 12 11 10 34 34 H 1.09001 * 109.58780 * 211.18320 * 12 11 10 35 35 H 1.08997 * 109.46927 * 305.00447 * 16 14 13 36 36 H 1.08997 * 109.47399 * 185.00166 * 16 14 13 37 37 H 0.97006 * 119.99878 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.46736 * 359.71140 * 21 20 18 39 39 H 1.08005 * 119.53409 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.51009 * 180.02562 * 26 24 23 41 41 H 1.08993 * 109.46184 * 149.26667 * 27 9 7 42 42 H 1.09000 * 109.45815 * 29.30585 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0609 -1.2190 0.2501 9 7 1.3627 -2.3667 -0.3153 10 6 0.1711 -2.3034 -1.1823 11 6 0.1767 -3.4440 -2.2107 12 6 1.5843 -3.6501 -2.7329 13 8 2.2338 -4.6230 -1.9253 14 6 2.8926 -4.2238 -0.7802 15 1 3.6427 -3.4750 -1.0349 16 6 3.5761 -5.4323 -0.1374 17 7 4.6225 -5.9343 -1.0314 18 6 5.3618 -7.0019 -0.6711 19 8 5.1601 -7.5485 0.3954 20 6 6.4196 -7.5099 -1.5755 21 6 7.1985 -8.6164 -1.2202 22 6 8.1700 -9.0610 -2.0942 23 7 8.3687 -8.4588 -3.2505 24 6 7.6574 -7.4125 -3.6256 25 9 7.9029 -6.8329 -4.8210 26 6 6.6622 -6.9010 -2.8090 27 6 1.8748 -3.6165 0.2158 28 1 -0.4849 0.8401 -0.0004 29 1 0.1607 -1.3483 -1.7073 30 1 -0.7240 -2.3823 -0.5654 31 1 -0.4842 -3.1890 -3.0391 32 1 -0.1726 -4.3615 -1.7372 33 1 2.1332 -2.7096 -2.6846 34 1 1.5438 -3.9995 -3.7646 35 1 2.8393 -6.2166 0.0360 36 1 4.0212 -5.1354 0.8122 37 1 4.7832 -5.4982 -1.8829 38 1 7.0422 -9.1153 -0.2752 39 1 8.7759 -9.9143 -1.8274 40 1 6.0829 -6.0447 -3.1212 41 1 1.0500 -4.3137 0.3626 42 1 2.3674 -3.4307 1.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073550618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:57 Heat of formation + Delta-G solvation = -54.890226 kcal Electronic energy + Delta-G solvation = -27125.183106 eV Core-core repulsion = 23021.114989 eV Total energy + Delta-G solvation = -4104.068117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.37390 -40.88816 -39.47856 -38.74741 -35.41136 -34.85140 -33.41338 -32.13565 -31.56102 -31.27719 -28.74293 -26.13013 -25.51839 -24.79154 -23.92983 -22.69427 -21.12410 -20.78529 -19.64698 -18.82955 -17.74879 -17.08423 -16.91437 -16.48575 -16.25832 -16.16783 -15.94472 -15.30083 -15.08946 -14.99839 -14.78512 -14.24726 -13.89817 -13.76803 -13.53650 -13.46460 -13.07440 -12.81216 -12.62917 -12.36723 -12.16585 -11.49253 -11.26960 -11.06413 -10.95598 -10.73394 -10.59709 -10.47411 -10.29310 -10.05521 -9.93180 -9.84032 -9.77200 -9.50514 -9.18068 -8.91283 -8.50354 -6.83630 -5.90613 -3.36077 0.17056 0.43082 2.52855 2.83528 3.09063 3.29164 3.29857 3.36899 3.37728 3.94456 4.04210 4.27349 4.37879 4.42442 4.45311 4.92340 5.07126 5.09205 5.26556 5.29366 5.42723 5.49753 5.54803 5.61441 5.77268 5.87024 5.91003 6.05404 6.07544 6.14808 6.26727 6.33010 6.46410 6.63457 6.66975 6.73928 7.11414 7.28254 7.28566 7.56809 7.70178 7.92309 8.10772 8.32226 9.10092 9.74582 10.20443 11.16852 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002786 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.773985 B =10046.486517 C =10289.571648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.397 6.397 14 C 0.065 3.935 15 H 0.053 0.947 16 C 0.131 3.869 17 N -0.707 5.707 18 C 0.554 3.446 19 O -0.528 6.528 20 C -0.053 4.053 21 C -0.128 4.128 22 C 0.134 3.866 23 N -0.502 5.502 24 C 0.307 3.693 25 F -0.108 7.108 26 C -0.164 4.164 27 C 0.128 3.872 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.044 0.956 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.239 -14.672 -5.802 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.398 4.398 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.316 6.316 14 C 0.003 3.997 15 H 0.071 0.929 16 C 0.008 3.992 17 N -0.358 5.358 18 C 0.339 3.661 19 O -0.405 6.405 20 C -0.064 4.064 21 C -0.149 4.149 22 C -0.022 4.022 23 N -0.217 5.217 24 C 0.154 3.846 25 F -0.087 7.087 26 C -0.185 4.185 27 C -0.001 4.001 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.239 0.761 38 H 0.176 0.824 39 H 0.193 0.807 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.525 -15.313 -5.652 19.982 hybrid contribution -0.175 1.957 -0.149 1.971 sum 11.350 -13.356 -5.801 18.462 Atomic orbital electron populations 1.70067 1.05267 1.25660 1.53509 1.25052 0.95297 0.98461 1.00317 0.86293 0.79154 0.83581 0.77739 1.21364 1.21650 1.20366 1.19222 0.92408 0.84831 1.43296 0.91536 1.43836 1.31480 1.01540 1.54362 1.21009 0.88449 0.95468 0.89927 1.22771 0.97032 1.01331 1.00440 1.22032 0.92835 0.92185 0.91765 1.86064 1.70729 1.38085 1.36742 1.22656 0.95036 0.93691 0.88349 0.92923 1.21556 0.88650 0.96388 0.92642 1.45939 1.35873 1.30800 1.23141 1.18002 0.81406 0.80783 0.85913 1.90803 1.68794 1.57904 1.23001 1.20367 0.96448 0.95894 0.93735 1.22392 0.94853 0.95646 1.02009 1.22591 0.95022 0.97699 0.86893 1.66901 1.27149 1.08353 1.19323 1.17968 0.92984 0.90962 0.82702 1.91664 1.93415 1.81577 1.42030 1.22073 0.99269 1.02694 0.94507 1.21395 0.95094 0.89049 0.94571 0.93491 0.90596 0.95403 0.92051 0.92355 0.91981 0.91158 0.90421 0.89678 0.76072 0.82376 0.80688 0.82844 0.93719 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.00 55.49 0.61 -24.46 16 2 C 0.01 0.21 4.89 -17.43 -0.09 0.13 16 3 Si 0.90 20.83 29.58 -169.99 -5.03 15.80 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.27 -6.89 9.46 -15.06 -0.14 -7.03 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.75 2.23 -172.02 -0.38 -14.13 16 10 C 0.18 3.99 4.70 -3.19 -0.02 3.97 16 11 C -0.18 -3.16 5.79 -27.17 -0.16 -3.32 16 12 C 0.09 1.46 6.38 36.42 0.23 1.69 16 13 O -0.40 -6.52 9.38 -26.51 -0.25 -6.76 16 14 C 0.06 1.05 2.68 -25.78 -0.07 0.98 16 15 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.13 1.81 5.34 -4.04 -0.02 1.79 16 17 N -0.71 -8.50 5.45 -61.15 -0.33 -8.83 16 18 C 0.55 6.90 7.80 -12.19 -0.10 6.81 16 19 O -0.53 -8.14 16.45 5.35 0.09 -8.06 16 20 C -0.05 -0.53 5.91 -104.66 -0.62 -1.15 16 21 C -0.13 -1.07 9.68 -39.03 -0.38 -1.45 16 22 C 0.13 1.02 11.17 -17.60 -0.20 0.82 16 23 N -0.50 -5.13 10.35 -13.64 -0.14 -5.27 16 24 C 0.31 3.15 8.41 -17.39 -0.15 3.01 16 25 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 26 C -0.16 -1.50 9.59 -38.94 -0.37 -1.87 16 27 C 0.13 2.49 5.12 -3.82 -0.02 2.47 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 29 H 0.08 1.91 6.37 -51.93 -0.33 1.58 16 30 H 0.03 0.69 8.04 -51.93 -0.42 0.28 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 33 H 0.06 1.15 7.40 -51.93 -0.38 0.77 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 4.18 6.60 -40.82 -0.27 3.91 16 38 H 0.16 1.16 7.74 -52.49 -0.41 0.75 16 39 H 0.18 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.15 1.13 6.53 -52.49 -0.34 0.78 16 41 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 42 H 0.06 1.10 7.98 -51.93 -0.41 0.68 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -30.59 351.67 -7.67 -38.26 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.49 Total: 2.44 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.09 Total: 6.84 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.25 Total: -52.69 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.16 Total: -14.82 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.59 -7.67 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073550618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds