Wall clock time and date at job start Tue Mar 31 2020 14:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99947 * 2 1 4 4 H 1.48504 * 109.46670 * 275.55115 * 3 2 1 5 5 H 1.48497 * 109.47076 * 35.54880 * 3 2 1 6 6 H 1.48496 * 109.47204 * 155.55486 * 3 2 1 7 7 C 1.38806 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00175 * 336.57544 * 7 2 1 9 9 N 1.36934 * 120.00220 * 156.56396 * 7 2 1 10 10 C 1.43427 * 120.63841 * 320.52607 * 9 7 2 11 11 C 1.55327 * 116.23665 * 269.32489 * 10 9 7 12 12 C 1.55184 * 108.87845 * 319.46258 * 11 10 9 13 13 O 1.39645 * 110.56773 * 322.14708 * 12 11 10 14 14 C 1.42375 * 108.63534 * 101.16809 * 13 12 11 15 15 H 1.09000 * 108.51209 * 28.48502 * 14 13 12 16 16 C 1.53003 * 108.61929 * 146.33820 * 14 13 12 17 17 N 1.46500 * 109.47197 * 304.24321 * 16 14 13 18 18 C 1.34767 * 120.00151 * 179.97438 * 17 16 14 19 19 O 1.21513 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.48157 * 120.00249 * 180.02562 * 18 17 16 21 21 C 1.39903 * 120.90947 * 179.97438 * 20 18 17 22 22 C 1.38040 * 119.06412 * 179.97438 * 21 20 18 23 23 N 1.31881 * 120.93733 * 359.97438 * 22 21 20 24 24 C 1.31960 * 122.01091 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.58447 * 179.97438 * 24 23 22 26 26 C 1.38515 * 120.83047 * 359.97438 * 24 23 22 27 27 C 1.46925 * 113.79292 * 267.45264 * 14 13 12 28 28 H 0.97009 * 120.00309 * 0.02562 * 1 2 3 29 29 H 1.08993 * 108.12713 * 31.08083 * 10 9 7 30 30 H 1.08995 * 108.12874 * 147.78279 * 10 9 7 31 31 H 1.09009 * 109.57093 * 79.27810 * 11 10 9 32 32 H 1.08998 * 109.57477 * 199.64299 * 11 10 9 33 33 H 1.09003 * 109.25790 * 82.42242 * 12 11 10 34 34 H 1.08992 * 109.26291 * 201.89922 * 12 11 10 35 35 H 1.09004 * 109.46893 * 184.24289 * 16 14 13 36 36 H 1.08997 * 109.47048 * 64.24482 * 16 14 13 37 37 H 0.97000 * 119.99739 * 359.97438 * 17 16 14 38 38 H 1.07996 * 120.46618 * 0.25297 * 21 20 18 39 39 H 1.08000 * 119.52795 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.52113 * 180.02562 * 26 24 23 41 41 H 1.08992 * 109.99201 * 176.12257 * 27 14 13 42 42 H 1.08998 * 109.98902 * 297.49340 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3803 2.1141 -1.3936 5 1 1.5111 2.6160 0.8140 6 1 3.6014 1.4093 0.5794 7 6 2.0102 -1.2021 0.0005 8 1 1.5370 -2.0987 0.3728 9 7 3.2948 -1.2512 -0.4711 10 6 3.6763 -0.5009 -1.6324 11 6 3.5355 -1.2291 -2.9972 12 6 4.0021 -2.6999 -2.8320 13 8 5.1031 -2.7721 -1.9760 14 6 4.6549 -3.1970 -0.6932 15 1 3.7646 -3.8121 -0.8239 16 6 5.7490 -4.0534 -0.0524 17 7 6.0866 -5.1636 -0.9467 18 6 7.0324 -6.0541 -0.5879 19 8 7.6048 -5.9365 0.4775 20 6 7.3743 -7.1766 -1.4925 21 6 8.3533 -8.1115 -1.1393 22 6 8.6412 -9.1426 -2.0108 23 7 8.0078 -9.2541 -3.1621 24 6 7.0779 -8.3952 -3.5349 25 9 6.4603 -8.5559 -4.7257 26 6 6.7272 -7.3309 -2.7208 27 6 4.3311 -2.0908 0.2179 28 1 -0.4851 0.8401 -0.0004 29 1 3.0690 0.4035 -1.6664 30 1 4.7182 -0.2028 -1.5164 31 1 2.4930 -1.2104 -3.3152 32 1 4.1554 -0.7309 -3.7426 33 1 3.1857 -3.2918 -2.4182 34 1 4.2786 -3.1010 -3.8070 35 1 5.3910 -4.4485 0.8983 36 1 6.6351 -3.4422 0.1187 37 1 5.6295 -5.2577 -1.7970 38 1 8.8732 -8.0303 -0.1962 39 1 9.3959 -9.8684 -1.7459 40 1 5.9651 -6.6311 -3.0307 41 1 3.9313 -2.4831 1.1530 42 1 5.2231 -1.4957 0.4133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073550619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:01 Heat of formation + Delta-G solvation = -44.020585 kcal Electronic energy + Delta-G solvation = -27271.714160 eV Core-core repulsion = 23168.117386 eV Total energy + Delta-G solvation = -4103.596774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.41328 -40.96380 -39.78887 -38.96435 -35.47079 -35.05179 -33.51532 -32.24483 -31.82201 -31.32962 -29.09513 -26.56735 -25.64909 -24.84442 -23.93384 -22.53977 -21.39050 -20.95673 -20.14945 -18.93429 -17.79761 -17.17933 -16.99327 -16.52090 -16.30444 -16.16379 -15.94574 -15.68609 -15.17886 -15.04772 -14.59215 -14.55922 -14.12815 -13.92614 -13.61052 -13.52734 -13.23033 -12.95590 -12.70188 -12.51874 -12.45543 -11.98121 -11.73551 -11.33993 -10.87174 -10.67578 -10.59636 -10.52481 -10.46809 -10.30479 -10.12011 -9.80842 -9.69993 -9.55009 -9.28382 -9.12588 -8.57966 -6.91955 -6.12398 -3.57491 0.11761 0.38621 2.46536 2.75269 3.04656 3.24384 3.26431 3.41181 3.47732 3.89379 4.08925 4.22315 4.37409 4.38757 4.43457 4.64638 4.88571 5.02015 5.09609 5.22046 5.23546 5.27062 5.47138 5.50100 5.62258 5.66516 5.75742 5.85757 5.88069 6.01004 6.04512 6.17178 6.23027 6.40369 6.47912 6.52654 6.72432 6.78300 7.07205 7.18752 7.50958 7.84310 7.95734 8.22039 8.87080 9.58297 10.02295 11.02366 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002796 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.477408 B =10013.149970 C =10647.311972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.277 4.277 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.151 3.849 11 C -0.168 4.168 12 C 0.064 3.936 13 O -0.357 6.357 14 C 0.061 3.939 15 H 0.071 0.929 16 C 0.115 3.885 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.527 6.527 20 C -0.054 4.054 21 C -0.128 4.128 22 C 0.135 3.865 23 N -0.501 5.501 24 C 0.308 3.692 25 F -0.107 7.107 26 C -0.164 4.164 27 C 0.112 3.888 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.716 -14.908 -5.247 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.158 4.158 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.405 4.405 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.023 3.977 11 C -0.209 4.209 12 C -0.014 4.014 13 O -0.275 6.275 14 C 0.002 3.998 15 H 0.089 0.911 16 C -0.009 4.009 17 N -0.357 5.357 18 C 0.340 3.660 19 O -0.403 6.403 20 C -0.065 4.065 21 C -0.149 4.149 22 C -0.021 4.021 23 N -0.217 5.217 24 C 0.154 3.846 25 F -0.086 7.086 26 C -0.186 4.186 27 C -0.013 4.013 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.239 0.761 38 H 0.176 0.824 39 H 0.193 0.807 40 H 0.171 0.829 41 H 0.101 0.899 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.281 -15.302 -5.073 22.213 hybrid contribution -0.534 1.625 -0.294 1.736 sum 14.748 -13.677 -5.367 20.817 Atomic orbital electron populations 1.69878 1.06111 1.27023 1.50332 1.25516 0.95018 0.97979 0.97314 0.86889 0.80751 0.84435 0.77097 1.21300 1.22796 1.19335 1.18687 0.86507 0.94400 1.40940 0.90609 1.44094 1.07362 1.55261 1.25325 1.20632 0.97412 0.93731 0.85886 1.23495 1.00811 0.96526 1.00096 1.22456 0.88550 0.97335 0.93027 1.87594 1.31076 1.88628 1.20186 1.22038 0.95053 0.96295 0.86452 0.91148 1.21844 0.99402 0.86703 0.92973 1.45821 1.39296 1.27419 1.23205 1.17990 0.80263 0.81831 0.85895 1.90806 1.51870 1.74618 1.23052 1.20346 0.96270 0.96122 0.93774 1.22396 0.96784 0.93707 1.01987 1.22600 0.96367 0.96242 0.86926 1.66905 1.07568 1.27894 1.19292 1.17962 0.91665 0.92103 0.82823 1.91668 1.79515 1.95064 1.42399 1.22058 1.02691 0.99223 0.94595 1.21039 0.93081 0.92216 0.94938 0.92520 0.93849 0.94923 0.91491 0.92583 0.92275 0.92016 0.89736 0.90307 0.76107 0.82362 0.80651 0.82911 0.89936 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.97 55.49 0.78 -25.44 16 2 C 0.04 1.21 5.27 -17.44 -0.09 1.11 16 3 Si 0.88 21.68 25.24 -169.99 -4.29 17.39 16 4 H -0.29 -6.90 6.74 56.52 0.38 -6.52 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.28 -7.28 9.93 -15.06 -0.15 -7.42 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 9 N -0.60 -13.26 2.16 -174.51 -0.38 -13.63 16 10 C 0.15 3.18 4.30 -4.43 -0.02 3.17 16 11 C -0.17 -2.98 6.75 -24.34 -0.16 -3.14 16 12 C 0.06 0.96 6.38 38.31 0.24 1.21 16 13 O -0.36 -5.44 9.34 -31.95 -0.30 -5.74 16 14 C 0.06 0.90 2.16 -29.64 -0.06 0.84 16 15 H 0.07 1.06 6.76 -51.93 -0.35 0.71 16 16 C 0.11 1.44 5.27 -4.04 -0.02 1.42 16 17 N -0.71 -7.80 5.36 -61.15 -0.33 -8.12 16 18 C 0.56 6.50 7.80 -12.19 -0.10 6.41 16 19 O -0.53 -7.75 16.45 5.35 0.09 -7.66 16 20 C -0.05 -0.51 5.91 -104.66 -0.62 -1.13 16 21 C -0.13 -1.01 9.68 -39.03 -0.38 -1.39 16 22 C 0.14 0.97 11.17 -17.60 -0.20 0.77 16 23 N -0.50 -4.92 10.35 -13.65 -0.14 -5.06 16 24 C 0.31 3.02 8.41 -17.39 -0.15 2.87 16 25 F -0.11 -1.11 17.29 2.25 0.04 -1.07 16 26 C -0.16 -1.40 9.59 -38.94 -0.37 -1.78 16 27 C 0.11 2.00 5.58 -4.93 -0.03 1.97 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.04 1.02 3.45 -51.93 -0.18 0.84 16 30 H 0.03 0.66 7.98 -51.93 -0.41 0.25 16 31 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.93 6.66 -51.93 -0.35 0.59 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.40 3.78 6.33 -40.82 -0.26 3.52 16 38 H 0.16 1.09 7.74 -52.49 -0.41 0.68 16 39 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 1.02 6.53 -52.48 -0.34 0.68 16 41 H 0.08 1.42 8.00 -51.93 -0.42 1.01 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -31.91 346.00 -6.67 -38.58 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.25 Total: 0.64 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.10 Total: 4.90 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.07 Total: -52.25 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.21 Total: -13.40 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.29 Total: 17.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.91 -6.67 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073550619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.439 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds