Wall clock time and date at job start Tue Mar 31 2020 14:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99947 * 2 1 4 4 H 1.48504 * 109.46670 * 275.55115 * 3 2 1 5 5 H 1.48497 * 109.47076 * 35.54880 * 3 2 1 6 6 H 1.48496 * 109.47204 * 155.55486 * 3 2 1 7 7 C 1.38806 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00175 * 336.57544 * 7 2 1 9 9 N 1.36934 * 120.00220 * 156.56396 * 7 2 1 10 10 C 1.43427 * 120.63841 * 320.52607 * 9 7 2 11 11 C 1.55327 * 116.23665 * 269.32489 * 10 9 7 12 12 C 1.55184 * 108.87845 * 319.46258 * 11 10 9 13 13 O 1.39645 * 110.56773 * 322.14708 * 12 11 10 14 14 C 1.42375 * 108.63534 * 101.16809 * 13 12 11 15 15 H 1.09000 * 108.51209 * 28.48502 * 14 13 12 16 16 C 1.53003 * 108.61929 * 146.33820 * 14 13 12 17 17 N 1.46500 * 109.47197 * 304.24321 * 16 14 13 18 18 C 1.34767 * 120.00151 * 179.97438 * 17 16 14 19 19 O 1.21513 * 120.00240 * 0.02562 * 18 17 16 20 20 C 1.48157 * 120.00249 * 180.02562 * 18 17 16 21 21 C 1.39903 * 120.90947 * 179.97438 * 20 18 17 22 22 C 1.38040 * 119.06412 * 179.97438 * 21 20 18 23 23 N 1.31881 * 120.93733 * 359.97438 * 22 21 20 24 24 C 1.31960 * 122.01091 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.58447 * 179.97438 * 24 23 22 26 26 C 1.38515 * 120.83047 * 359.97438 * 24 23 22 27 27 C 1.46925 * 113.79292 * 267.45264 * 14 13 12 28 28 H 0.97009 * 120.00309 * 0.02562 * 1 2 3 29 29 H 1.08993 * 108.12713 * 31.08083 * 10 9 7 30 30 H 1.08995 * 108.12874 * 147.78279 * 10 9 7 31 31 H 1.09009 * 109.57093 * 79.27810 * 11 10 9 32 32 H 1.08998 * 109.57477 * 199.64299 * 11 10 9 33 33 H 1.09003 * 109.25790 * 82.42242 * 12 11 10 34 34 H 1.08992 * 109.26291 * 201.89922 * 12 11 10 35 35 H 1.09004 * 109.46893 * 184.24289 * 16 14 13 36 36 H 1.08997 * 109.47048 * 64.24482 * 16 14 13 37 37 H 0.97000 * 119.99739 * 359.97438 * 17 16 14 38 38 H 1.07996 * 120.46618 * 0.25297 * 21 20 18 39 39 H 1.08000 * 119.52795 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.52113 * 180.02562 * 26 24 23 41 41 H 1.08992 * 109.99201 * 176.12257 * 27 14 13 42 42 H 1.08998 * 109.98902 * 297.49340 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3803 2.1141 -1.3936 5 1 1.5111 2.6160 0.8140 6 1 3.6014 1.4093 0.5794 7 6 2.0102 -1.2021 0.0005 8 1 1.5370 -2.0987 0.3728 9 7 3.2948 -1.2512 -0.4711 10 6 3.6763 -0.5009 -1.6324 11 6 3.5355 -1.2291 -2.9972 12 6 4.0021 -2.6999 -2.8320 13 8 5.1031 -2.7721 -1.9760 14 6 4.6549 -3.1970 -0.6932 15 1 3.7646 -3.8121 -0.8239 16 6 5.7490 -4.0534 -0.0524 17 7 6.0866 -5.1636 -0.9467 18 6 7.0324 -6.0541 -0.5879 19 8 7.6048 -5.9365 0.4775 20 6 7.3743 -7.1766 -1.4925 21 6 8.3533 -8.1115 -1.1393 22 6 8.6412 -9.1426 -2.0108 23 7 8.0078 -9.2541 -3.1621 24 6 7.0779 -8.3952 -3.5349 25 9 6.4603 -8.5559 -4.7257 26 6 6.7272 -7.3309 -2.7208 27 6 4.3311 -2.0908 0.2179 28 1 -0.4851 0.8401 -0.0004 29 1 3.0690 0.4035 -1.6664 30 1 4.7182 -0.2028 -1.5164 31 1 2.4930 -1.2104 -3.3152 32 1 4.1554 -0.7309 -3.7426 33 1 3.1857 -3.2918 -2.4182 34 1 4.2786 -3.1010 -3.8070 35 1 5.3910 -4.4485 0.8983 36 1 6.6351 -3.4422 0.1187 37 1 5.6295 -5.2577 -1.7970 38 1 8.8732 -8.0303 -0.1962 39 1 9.3959 -9.8684 -1.7459 40 1 5.9651 -6.6311 -3.0307 41 1 3.9313 -2.4831 1.1530 42 1 5.2231 -1.4957 0.4133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073550619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:00 Heat of formation + Delta-G solvation = -66.639856 kcal Electronic energy + Delta-G solvation = -27272.695005 eV Core-core repulsion = 23168.117386 eV Total energy + Delta-G solvation = -4104.577620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.13553 -41.75618 -40.92109 -39.94842 -37.07744 -36.16233 -34.37163 -33.83279 -33.33879 -31.98654 -30.53018 -27.79051 -27.21169 -25.83382 -24.74551 -23.88600 -22.57869 -22.00291 -21.68926 -19.76528 -18.85935 -18.50342 -17.81851 -17.51369 -17.47460 -17.22252 -17.08394 -16.88894 -16.25450 -16.04930 -15.96362 -15.72146 -15.40961 -14.95748 -14.68669 -14.47772 -14.41180 -14.24230 -14.07450 -13.91559 -13.71816 -13.27331 -13.17099 -12.79994 -12.64647 -12.34249 -12.03452 -11.75448 -11.65181 -11.56435 -11.32955 -11.24765 -10.86438 -10.61175 -10.46011 -10.23322 -10.16837 -8.76361 -8.24520 -5.64833 -0.58299 -0.23654 1.29083 1.39327 1.50040 1.65019 1.87216 2.39388 2.39982 2.55091 2.90145 3.00981 3.17867 3.25273 3.56669 3.72990 3.74094 3.93598 4.00999 4.20957 4.26491 4.28335 4.37089 4.41860 4.55927 4.56804 4.65471 4.66693 4.71708 4.77793 4.88669 4.97750 5.07938 5.11799 5.14851 5.23341 5.26904 5.40748 5.92049 6.13111 6.27511 6.31820 6.45780 6.95186 6.96686 7.57829 8.05230 8.94451 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002796 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.477408 B =10013.149970 C =10647.311972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.010 4.010 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.263 1.263 7 C -0.257 4.257 8 H 0.048 0.952 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.068 3.932 13 O -0.355 6.355 14 C 0.071 3.929 15 H 0.069 0.931 16 C 0.125 3.875 17 N -0.700 5.700 18 C 0.559 3.441 19 O -0.560 6.560 20 C -0.066 4.066 21 C -0.122 4.122 22 C 0.143 3.857 23 N -0.521 5.521 24 C 0.291 3.709 25 F -0.116 7.116 26 C -0.155 4.155 27 C 0.110 3.890 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.170 0.830 39 H 0.213 0.787 40 H 0.170 0.830 41 H 0.084 0.916 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.093 -15.933 -6.048 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.207 4.207 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.236 1.236 6 H -0.188 1.188 7 C -0.387 4.387 8 H 0.065 0.935 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.208 4.208 12 C -0.010 4.010 13 O -0.273 6.273 14 C 0.012 3.988 15 H 0.087 0.913 16 C 0.001 3.999 17 N -0.352 5.352 18 C 0.345 3.655 19 O -0.439 6.439 20 C -0.077 4.077 21 C -0.142 4.142 22 C -0.013 4.013 23 N -0.237 5.237 24 C 0.138 3.862 25 F -0.095 7.095 26 C -0.177 4.177 27 C -0.014 4.014 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.187 0.813 39 H 0.229 0.771 40 H 0.187 0.813 41 H 0.102 0.898 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.690 -16.340 -5.910 24.796 hybrid contribution -1.208 1.849 -0.037 2.209 sum 16.481 -14.491 -5.947 22.737 Atomic orbital electron populations 1.69985 1.07559 1.27498 1.53361 1.26052 0.95480 1.00869 0.98326 0.85941 0.79450 0.80906 0.77084 1.20696 1.23637 1.18757 1.18599 0.88123 0.93116 1.38863 0.93472 1.44201 1.06877 1.55964 1.26385 1.20721 0.97232 0.93267 0.87173 1.23453 1.00585 0.98347 0.98374 1.22476 0.88389 0.95401 0.94710 1.87608 1.30948 1.88585 1.20141 1.21765 0.95914 0.95227 0.85930 0.91334 1.21598 0.98323 0.86843 0.93125 1.45713 1.39235 1.26847 1.23356 1.18226 0.79605 0.81996 0.85635 1.90791 1.53082 1.75512 1.24538 1.20216 0.97543 0.96089 0.93889 1.22618 0.95993 0.93216 1.02404 1.23172 0.96148 0.96352 0.85653 1.66949 1.07966 1.28312 1.20441 1.18109 0.92296 0.92816 0.82969 1.91644 1.79761 1.95174 1.42894 1.22103 1.02623 0.99027 0.93923 1.21208 0.92003 0.92565 0.95592 0.92742 0.96439 0.93865 0.93125 0.90217 0.93210 0.88346 0.89272 0.90650 0.74989 0.81297 0.77082 0.81283 0.89806 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 13.97 21.65 0.30 -56.46 16 2 C -0.01 -0.54 5.27 84.86 0.45 -0.09 16 3 Si 0.94 45.42 25.24 68.60 1.73 47.16 16 4 H -0.28 -13.14 6.74 99.48 0.67 -12.47 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.26 -13.68 9.93 84.03 0.83 -12.85 16 8 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 9 N -0.61 -26.62 2.16 -706.02 -1.52 -28.15 16 10 C 0.14 5.83 4.30 87.75 0.38 6.20 16 11 C -0.17 -5.56 6.75 32.14 0.22 -5.35 16 12 C 0.07 1.85 6.38 72.73 0.46 2.32 16 13 O -0.35 -9.77 9.34 -137.24 -1.28 -11.05 16 14 C 0.07 1.95 2.16 28.71 0.06 2.01 16 15 H 0.07 1.95 6.76 -2.39 -0.02 1.93 16 16 C 0.13 2.89 5.27 86.38 0.45 3.34 16 17 N -0.70 -13.85 5.36 -465.68 -2.49 -16.34 16 18 C 0.56 12.00 7.80 86.88 0.68 12.68 16 19 O -0.56 -15.62 16.45 -3.76 -0.06 -15.68 16 20 C -0.07 -1.11 5.91 -19.89 -0.12 -1.23 16 21 C -0.12 -1.63 9.68 22.63 0.22 -1.41 16 22 C 0.14 1.66 11.17 84.64 0.95 2.60 16 23 N -0.52 -9.19 10.35 -197.09 -2.04 -11.23 16 24 C 0.29 5.22 8.41 84.74 0.71 5.94 16 25 F -0.12 -2.26 17.29 44.97 0.78 -1.48 16 26 C -0.16 -2.34 9.59 22.69 0.22 -2.12 16 27 C 0.11 3.76 5.58 83.79 0.47 4.23 16 28 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 29 H 0.02 0.81 3.45 -2.39 -0.01 0.80 16 30 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 31 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.47 6.66 -2.39 -0.02 1.45 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 6.60 6.33 -92.71 -0.59 6.01 16 38 H 0.17 1.90 7.74 -2.91 -0.02 1.87 16 39 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.17 1.83 6.53 -2.91 -0.02 1.81 16 41 H 0.08 2.81 8.00 -2.39 -0.02 2.80 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -69.56 346.00 1.83 -67.73 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.44 Total: 9.23 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.98 Total: 16.28 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -5.75 Total: -112.18 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.34 Total: -26.73 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.73 Total: 47.16 kcal Total: -69.56 1.83 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073550619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.087 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds