Wall clock time and date at job start Tue Mar 31 2020 14:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48500 * 109.47281 * 270.00479 * 3 2 1 5 5 H 1.48510 * 109.46742 * 29.99917 * 3 2 1 6 6 H 1.48498 * 109.47283 * 150.00027 * 3 2 1 7 7 C 1.38812 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99778 * 195.46457 * 7 2 1 9 9 N 1.36935 * 120.00074 * 15.46637 * 7 2 1 10 10 C 1.47509 * 118.75956 * 26.09762 * 9 7 2 11 11 C 1.53573 * 111.03035 * 138.37295 * 10 9 7 12 12 C 1.51536 * 109.57956 * 320.02185 * 11 10 9 13 13 O 1.42155 * 108.76299 * 91.39755 * 12 11 10 14 14 C 1.38013 * 119.43882 * 272.77809 * 13 12 11 15 15 H 1.08997 * 109.47121 * 303.42138 * 14 13 12 16 16 C 1.53009 * 109.47028 * 183.42785 * 14 13 12 17 17 N 1.46500 * 109.46848 * 64.99775 * 16 14 13 18 18 C 1.34776 * 119.99555 * 179.97438 * 17 16 14 19 19 O 1.21535 * 120.00135 * 0.02562 * 18 17 16 20 20 C 1.47998 * 119.99905 * 180.02562 * 18 17 16 21 21 C 1.39899 * 120.93947 * 359.97438 * 20 18 17 22 22 C 1.38040 * 119.03386 * 179.97438 * 21 20 18 23 23 N 1.31865 * 120.98296 * 359.97438 * 22 21 20 24 24 C 1.31730 * 122.09230 * 0.02562 * 23 22 21 25 25 C 1.38534 * 120.84427 * 0.02562 * 24 23 22 26 26 F 1.35105 * 120.53405 * 180.02562 * 25 24 23 27 27 C 1.45120 * 118.75623 * 206.09322 * 9 7 2 28 28 H 0.97003 * 119.99938 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.16344 * 17.97411 * 10 9 7 30 30 H 1.08999 * 109.12223 * 258.74852 * 10 9 7 31 31 H 1.09002 * 109.45448 * 199.98805 * 11 10 9 32 32 H 1.08999 * 109.44854 * 80.05581 * 11 10 9 33 33 H 1.08998 * 109.58948 * 331.61632 * 12 11 10 34 34 H 1.08998 * 109.58934 * 211.17975 * 12 11 10 35 35 H 1.09005 * 109.46751 * 304.99998 * 16 14 13 36 36 H 1.08998 * 109.46795 * 184.99793 * 16 14 13 37 37 H 0.96996 * 119.99910 * 0.02562 * 17 16 14 38 38 H 1.07997 * 120.48464 * 0.25665 * 21 20 18 39 39 H 1.08001 * 119.51440 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.56993 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.46110 * 149.26738 * 27 9 7 42 42 H 1.09004 * 109.46098 * 29.31370 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2192 0.2488 9 7 1.3626 -2.3664 -0.3173 10 6 0.1709 -2.3025 -1.1843 11 6 0.1765 -3.4422 -2.2136 12 6 1.5840 -3.6477 -2.7361 13 8 2.2336 -4.6214 -1.9294 14 6 2.8925 -4.2231 -0.7839 15 1 3.6426 -3.4742 -1.0380 16 6 3.5761 -5.4322 -0.1422 17 7 4.6223 -5.9334 -1.0368 18 6 5.3623 -7.0008 -0.6768 19 8 5.1613 -7.5478 0.3897 20 6 6.4197 -7.5068 -1.5803 21 6 6.6674 -6.8926 -2.8126 22 6 7.6637 -7.3968 -3.6242 23 7 8.3778 -8.4414 -3.2532 24 6 8.1800 -9.0514 -2.1025 25 6 7.2006 -8.6139 -1.2258 26 9 7.0034 -9.2439 -0.0470 27 6 1.8749 -3.6166 0.2126 28 1 -0.4850 0.8401 0.0004 29 1 0.1606 -1.3469 -1.7084 30 1 -0.7241 -2.3818 -0.5673 31 1 -0.4844 -3.1866 -3.0419 32 1 -0.1728 -4.3600 -1.7408 33 1 2.1330 -2.7073 -2.6870 34 1 1.5435 -3.9963 -3.7680 35 1 2.8393 -6.2168 0.0307 36 1 4.0213 -5.1361 0.8077 37 1 4.7830 -5.4966 -1.8878 38 1 6.0908 -6.0336 -3.1224 39 1 7.8618 -6.9284 -4.5770 40 1 8.7886 -9.9040 -1.8397 41 1 1.0500 -4.3141 0.3589 42 1 2.3674 -3.4317 1.1672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073558722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:04 Heat of formation + Delta-G solvation = -57.344548 kcal Electronic energy + Delta-G solvation = -27292.713122 eV Core-core repulsion = 23188.538578 eV Total energy + Delta-G solvation = -4104.174545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.20547 -40.75607 -39.50454 -38.74979 -35.38228 -34.80966 -33.28298 -32.04384 -31.53893 -31.29946 -28.71270 -26.09537 -25.51737 -24.80366 -23.81675 -22.71152 -21.09902 -20.77264 -19.63534 -18.61584 -17.68869 -17.55708 -17.04506 -16.33445 -16.11970 -15.98527 -15.82191 -15.22967 -14.86898 -14.83152 -14.75915 -14.27929 -13.94241 -13.81036 -13.75297 -13.39743 -13.07854 -12.81046 -12.54341 -12.35102 -12.15932 -11.48892 -11.26754 -11.05828 -10.95001 -10.73152 -10.58961 -10.35267 -10.28990 -9.95120 -9.89478 -9.83983 -9.76490 -9.42931 -9.12347 -8.91136 -8.50315 -6.83361 -5.90511 -3.35948 0.16627 0.44921 2.60688 2.86098 3.28806 3.31434 3.36543 3.37549 3.54602 3.95551 4.04306 4.15966 4.25526 4.35333 4.39053 4.87981 5.08356 5.17838 5.27535 5.30724 5.32911 5.44696 5.52028 5.61792 5.78280 5.88138 5.92401 6.06583 6.08562 6.15531 6.27108 6.35797 6.47247 6.63258 6.67279 6.74629 7.28252 7.28540 7.32548 7.56873 7.70237 7.98624 8.11159 8.32359 9.10236 9.74724 10.20684 11.16989 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.002760 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.918891 B =10143.313531 C =10297.806324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.397 6.397 14 C 0.066 3.934 15 H 0.053 0.947 16 C 0.132 3.868 17 N -0.707 5.707 18 C 0.552 3.448 19 O -0.521 6.521 20 C -0.122 4.122 21 C -0.110 4.110 22 C 0.083 3.917 23 N -0.443 5.443 24 C 0.069 3.931 25 C 0.105 3.895 26 F -0.105 7.105 27 C 0.128 3.872 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.174 0.826 41 H 0.044 0.956 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.788 -13.399 -8.404 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.316 6.316 14 C 0.004 3.996 15 H 0.071 0.929 16 C 0.008 3.992 17 N -0.359 5.359 18 C 0.337 3.663 19 O -0.398 6.398 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.073 4.073 23 N -0.152 5.152 24 C -0.090 4.090 25 C 0.082 3.918 26 F -0.083 7.083 27 C -0.001 4.001 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.238 0.762 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.073 -14.105 -8.148 20.276 hybrid contribution -0.346 1.741 0.401 1.820 sum 11.726 -12.365 -7.747 18.719 Atomic orbital electron populations 1.70067 1.05267 1.25652 1.53528 1.25054 0.95298 0.98460 1.00332 0.86290 0.79159 0.83586 0.77718 1.21373 1.21652 1.20369 1.19224 0.92407 0.84845 1.43260 0.91537 1.43838 1.31480 1.01521 1.54385 1.21008 0.88455 0.95467 0.89920 1.22770 0.97041 1.01344 1.00435 1.22025 0.92843 0.92165 0.91764 1.86069 1.70721 1.38069 1.36752 1.22644 0.94988 0.93675 0.88302 0.92935 1.21539 0.88651 0.96335 0.92641 1.45863 1.35995 1.30862 1.23133 1.17892 0.81493 0.81010 0.85946 1.90855 1.68525 1.57548 1.22840 1.20697 0.98715 0.97090 0.96918 1.22406 0.98138 1.00105 0.92437 1.22839 0.91706 0.92602 1.00138 1.67602 1.24936 1.07575 1.15061 1.23000 0.95983 1.00545 0.89465 1.18916 0.96637 0.92336 0.83912 1.91629 1.93753 1.79873 1.43069 1.21398 0.95111 0.89041 0.94597 0.93494 0.90593 0.95414 0.92057 0.92357 0.91992 0.91180 0.90511 0.89768 0.76183 0.83130 0.81159 0.80848 0.93726 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 10.99 55.49 0.61 -24.48 16 2 C 0.01 0.21 4.89 -17.43 -0.09 0.12 16 3 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.27 -6.89 9.46 -15.06 -0.14 -7.03 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.79 2.23 -172.02 -0.38 -14.17 16 10 C 0.18 3.99 4.70 -3.19 -0.02 3.98 16 11 C -0.18 -3.16 5.79 -27.17 -0.16 -3.32 16 12 C 0.09 1.45 6.37 36.42 0.23 1.68 16 13 O -0.40 -6.51 9.38 -26.53 -0.25 -6.76 16 14 C 0.07 1.08 2.68 -25.78 -0.07 1.01 16 15 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.13 1.90 5.34 -4.04 -0.02 1.87 16 17 N -0.71 -8.86 5.45 -61.20 -0.33 -9.19 16 18 C 0.55 7.62 7.79 -12.26 -0.10 7.53 16 19 O -0.52 -9.14 15.48 5.33 0.08 -9.06 16 20 C -0.12 -1.35 5.91 -104.60 -0.62 -1.97 16 21 C -0.11 -0.86 9.61 -39.03 -0.38 -1.24 16 22 C 0.08 0.60 11.17 -17.61 -0.20 0.41 16 23 N -0.44 -3.98 10.33 -13.24 -0.14 -4.11 16 24 C 0.07 0.61 11.17 -17.49 -0.20 0.41 16 25 C 0.10 1.16 7.33 -38.80 -0.28 0.87 16 26 F -0.11 -1.38 15.72 2.25 0.04 -1.34 16 27 C 0.13 2.51 5.12 -3.83 -0.02 2.49 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.08 1.90 6.37 -51.93 -0.33 1.57 16 30 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 33 H 0.06 1.14 7.40 -51.93 -0.38 0.75 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.40 4.13 6.60 -40.82 -0.27 3.86 16 38 H 0.15 0.82 6.54 -52.49 -0.34 0.48 16 39 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.04 0.87 8.11 -51.92 -0.42 0.45 16 42 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -31.52 349.88 -7.68 -39.20 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.50 Total: 2.08 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.04 Total: 6.81 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.24 Total: -51.96 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.17 Total: -15.82 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.52 -7.68 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073558722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.149 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds