Wall clock time and date at job start Tue Mar 31 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48502 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47307 * 299.99855 * 3 2 1 6 6 H 1.48502 * 109.47102 * 59.99877 * 3 2 1 7 7 C 1.38809 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99757 * 160.62680 * 7 2 1 9 9 N 1.36939 * 120.00021 * 340.63156 * 7 2 1 10 10 C 1.43425 * 120.63678 * 155.69716 * 9 7 2 11 11 C 1.55329 * 116.23839 * 269.33262 * 10 9 7 12 12 C 1.55187 * 108.87397 * 319.45812 * 11 10 9 13 13 O 1.39651 * 110.56618 * 322.15084 * 12 11 10 14 14 C 1.42373 * 108.63450 * 101.17113 * 13 12 11 15 15 H 1.09003 * 108.50908 * 28.48055 * 14 13 12 16 16 C 1.53001 * 108.62211 * 146.33153 * 14 13 12 17 17 N 1.46496 * 109.47159 * 304.24492 * 16 14 13 18 18 C 1.34781 * 120.00046 * 179.97438 * 17 16 14 19 19 O 1.21539 * 119.99677 * 0.02562 * 18 17 16 20 20 C 1.47988 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.39899 * 120.94419 * 0.02562 * 20 18 17 22 22 C 1.38043 * 119.03632 * 179.97438 * 21 20 18 23 23 N 1.31857 * 120.97981 * 359.97438 * 22 21 20 24 24 C 1.31720 * 122.09632 * 0.02562 * 23 22 21 25 25 C 1.38537 * 120.84852 * 0.26000 * 24 23 22 26 26 F 1.35100 * 120.53836 * 179.71905 * 25 24 23 27 27 C 1.46924 * 113.79208 * 267.45057 * 14 13 12 28 28 H 0.96997 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.09004 * 108.12340 * 31.08477 * 10 9 7 30 30 H 1.08994 * 108.12880 * 147.78180 * 10 9 7 31 31 H 1.08994 * 109.57256 * 79.27863 * 11 10 9 32 32 H 1.08999 * 109.56754 * 199.64932 * 11 10 9 33 33 H 1.08998 * 109.25903 * 82.42517 * 12 11 10 34 34 H 1.08995 * 109.26212 * 201.90551 * 12 11 10 35 35 H 1.09001 * 109.47007 * 184.23964 * 16 14 13 36 36 H 1.09003 * 109.46868 * 64.24515 * 16 14 13 37 37 H 0.97002 * 120.00034 * 359.97438 * 17 16 14 38 38 H 1.08002 * 120.48255 * 0.02562 * 21 20 18 39 39 H 1.08001 * 119.50921 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.57448 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.99019 * 176.12541 * 27 14 13 42 42 H 1.09001 * 109.98743 * 297.48960 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0444 -1.2287 -0.3097 9 7 1.3838 -2.3543 0.3944 10 6 1.8499 -3.6320 -0.0608 11 6 1.2142 -4.1674 -1.3730 12 6 -0.3052 -3.8521 -1.3598 13 8 -0.8276 -4.0089 -0.0742 14 6 -0.9687 -2.7226 0.5195 15 1 -1.1316 -1.9918 -0.2726 16 6 -2.1984 -2.7368 1.4298 17 7 -3.3724 -3.1520 0.6581 18 6 -4.5766 -3.2380 1.2571 19 8 -4.6887 -2.9708 2.4374 20 6 -5.7627 -3.6569 0.4774 21 6 -5.6564 -3.9686 -0.8823 22 6 -6.7881 -4.3554 -1.5715 23 7 -7.9573 -4.4339 -0.9669 24 6 -8.1049 -4.1502 0.3109 25 6 -7.0243 -3.7478 1.0787 26 9 -7.1839 -3.4529 2.3874 27 6 0.1962 -2.3042 1.3112 28 1 -0.4850 0.8400 0.0004 29 1 2.9280 -3.5668 -0.2083 30 1 1.6613 -4.3620 0.7264 31 1 1.6806 -3.6809 -2.2297 32 1 1.3628 -5.2453 -1.4374 33 1 -0.4621 -2.8248 -1.6887 34 1 -0.8191 -4.5300 -2.0412 35 1 -2.3634 -1.7378 1.8332 36 1 -2.0358 -3.4372 2.2490 37 1 -3.2830 -3.3649 -0.2841 38 1 -4.7025 -3.9082 -1.3852 39 1 -6.7149 -4.5974 -2.6215 40 1 -9.0819 -4.2279 0.7648 41 1 0.0516 -1.2884 1.6787 42 1 0.3426 -2.9870 2.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073558723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:07 Heat of formation + Delta-G solvation = -69.748247 kcal Electronic energy + Delta-G solvation = -27850.105631 eV Core-core repulsion = 23745.393221 eV Total energy + Delta-G solvation = -4104.712410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.07441 -41.62193 -40.77248 -39.97127 -36.82263 -36.12475 -34.26207 -33.64135 -32.77775 -31.97043 -30.31206 -27.59987 -27.06592 -25.80556 -24.63341 -23.99970 -22.45711 -21.89178 -21.29691 -19.54911 -18.92815 -18.41058 -18.36147 -17.70498 -17.09669 -16.97989 -16.68189 -16.58323 -16.25290 -15.93879 -15.58364 -15.47299 -15.38289 -14.85665 -14.78020 -14.51801 -14.38969 -14.21240 -13.94606 -13.60555 -13.30043 -13.17170 -12.96992 -12.65176 -12.51884 -12.27040 -11.93135 -11.80521 -11.57331 -11.38459 -11.18980 -11.13390 -10.72898 -10.56630 -10.29906 -10.22377 -10.09358 -8.72665 -7.90809 -5.30765 -0.62134 -0.19670 1.46149 1.52047 1.58845 1.66620 1.87827 2.51598 2.57829 2.83083 3.08379 3.27029 3.32554 3.39813 3.49935 3.55623 3.66121 4.11970 4.26503 4.27789 4.36825 4.39223 4.49887 4.57277 4.65649 4.72221 4.74633 4.75501 4.80881 4.91504 5.07155 5.18854 5.20407 5.26911 5.35408 5.40606 5.43271 5.48917 5.68434 6.32416 6.37023 6.50221 6.64270 6.97538 7.10509 7.82691 8.35190 9.15343 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003294 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.734931 B = 8499.534715 C = 9083.905187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.034 4.034 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.066 3.934 13 O -0.367 6.367 14 C 0.081 3.919 15 H 0.087 0.913 16 C 0.132 3.868 17 N -0.691 5.691 18 C 0.548 3.452 19 O -0.569 6.569 20 C -0.139 4.139 21 C -0.100 4.100 22 C 0.096 3.904 23 N -0.453 5.453 24 C 0.079 3.921 25 C 0.079 3.921 26 F -0.126 7.126 27 C 0.144 3.856 28 H 0.251 0.749 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.174 0.826 39 H 0.211 0.789 40 H 0.199 0.801 41 H 0.078 0.922 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 -9.977 -5.931 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.012 4.012 13 O -0.285 6.285 14 C 0.022 3.978 15 H 0.105 0.895 16 C 0.007 3.993 17 N -0.342 5.342 18 C 0.335 3.665 19 O -0.449 6.449 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.060 4.060 23 N -0.162 5.162 24 C -0.080 4.080 25 C 0.056 3.944 26 F -0.104 7.104 27 C 0.019 3.981 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.192 0.808 39 H 0.227 0.773 40 H 0.215 0.785 41 H 0.096 0.904 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.052 -10.068 -5.419 17.351 hybrid contribution 1.564 1.681 0.551 2.361 sum -11.488 -8.387 -4.868 15.034 Atomic orbital electron populations 1.69978 1.05787 1.25628 1.54893 1.25426 0.96022 1.00376 1.01252 0.85386 0.78579 0.80831 0.76606 1.20035 1.22008 1.22115 1.19422 0.93696 0.86356 1.39644 0.91950 1.44222 1.34609 1.01931 1.51532 1.20502 0.96011 0.86640 0.94349 1.23490 0.96814 1.00628 0.99671 1.22452 0.93810 1.00432 0.84472 1.87516 1.83359 1.28011 1.29613 1.21751 0.93205 0.84905 0.97901 0.89484 1.21484 0.83657 0.99693 0.94468 1.45613 1.06715 1.67235 1.14622 1.18379 0.83626 0.77894 0.86619 1.90812 1.85932 1.51050 1.17144 1.20614 0.92691 1.05108 0.96643 1.22683 1.03113 0.95387 0.90882 1.23480 0.85942 0.94210 1.02403 1.67712 1.27377 1.11822 1.09250 1.23310 0.98635 0.96365 0.89644 1.19250 0.94811 1.00615 0.79746 1.91566 1.95968 1.90252 1.32619 1.20664 0.86292 1.00126 0.91040 0.93984 0.95187 0.94755 0.92733 0.90309 0.94317 0.88925 0.91654 0.92008 0.74913 0.80844 0.77290 0.78462 0.90381 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.26 9.57 21.65 0.21 -47.05 16 2 C -0.03 -1.75 4.92 84.86 0.42 -1.34 16 3 Si 0.96 42.44 29.60 68.60 2.03 44.47 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.26 -13.37 9.62 84.03 0.81 -12.56 16 8 H 0.06 3.22 7.88 -2.91 -0.02 3.19 16 9 N -0.60 -28.03 2.61 -706.02 -1.84 -29.88 16 10 C 0.15 6.08 5.33 87.75 0.47 6.55 16 11 C -0.17 -5.46 6.75 32.14 0.22 -5.24 16 12 C 0.07 2.12 6.38 72.73 0.46 2.59 16 13 O -0.37 -12.75 9.34 -137.30 -1.28 -14.03 16 14 C 0.08 3.14 2.01 28.71 0.06 3.19 16 15 H 0.09 3.79 5.24 -2.39 -0.01 3.78 16 16 C 0.13 4.72 5.27 86.38 0.45 5.17 16 17 N -0.69 -20.69 5.36 -465.83 -2.49 -23.19 16 18 C 0.55 17.66 7.79 86.83 0.68 18.34 16 19 O -0.57 -23.21 15.48 -3.84 -0.06 -23.27 16 20 C -0.14 -3.43 5.91 -19.85 -0.12 -3.55 16 21 C -0.10 -1.61 9.61 22.63 0.22 -1.39 16 22 C 0.10 1.26 11.17 84.64 0.95 2.21 16 23 N -0.45 -7.76 10.33 -195.81 -2.02 -9.78 16 24 C 0.08 1.42 11.17 84.78 0.95 2.37 16 25 C 0.08 1.92 7.33 22.78 0.17 2.09 16 26 F -0.13 -3.76 15.72 44.97 0.71 -3.05 16 27 C 0.14 6.37 4.71 83.79 0.39 6.77 16 28 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 29 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 30 H 0.03 1.33 7.98 -2.39 -0.02 1.31 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.47 6.66 -2.39 -0.02 1.45 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.41 10.06 6.33 -92.71 -0.59 9.47 16 38 H 0.17 1.89 6.54 -2.91 -0.02 1.87 16 39 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.08 3.89 6.03 -2.39 -0.01 3.88 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -64.97 345.18 1.83 -63.14 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.48 Total: 17.45 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 6.12 Total: 25.20 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -6.15 Total: -109.90 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.34 Total: -37.30 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.71 Total: -3.05 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.97 1.83 -63.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073558723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.613 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds