Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47158 * 94.74027 * 3 2 1 5 5 H 1.48502 * 109.47008 * 214.73784 * 3 2 1 6 6 H 1.48500 * 109.47313 * 334.73792 * 3 2 1 7 7 C 1.38814 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 19.59746 * 7 2 1 9 9 N 1.36929 * 120.00132 * 199.59716 * 7 2 1 10 10 C 1.44470 * 118.51392 * 207.66031 * 9 7 2 11 11 C 1.54878 * 109.31949 * 268.93333 * 10 9 7 12 12 C 1.47687 * 109.68201 * 290.09595 * 11 10 9 13 13 O 1.42565 * 113.66056 * 60.80416 * 12 11 10 14 14 C 1.40528 * 113.54490 * 272.24049 * 13 12 11 15 15 H 1.08994 * 109.40094 * 335.17260 * 14 13 12 16 16 C 1.53000 * 109.40304 * 215.41198 * 14 13 12 17 17 N 1.46497 * 109.46973 * 65.00387 * 16 14 13 18 18 C 1.34775 * 119.99667 * 179.97438 * 17 16 14 19 19 O 1.21557 * 120.00361 * 359.97438 * 18 17 16 20 20 C 1.47847 * 120.00139 * 179.97438 * 18 17 16 21 21 C 1.39553 * 120.54399 * 0.02562 * 20 18 17 22 22 N 1.31657 * 120.62255 * 179.97438 * 21 20 18 23 23 C 1.31934 * 121.90907 * 359.97438 * 22 21 20 24 24 C 1.38533 * 121.04373 * 0.02562 * 23 22 21 25 25 F 1.35108 * 120.37694 * 179.97438 * 24 23 22 26 26 C 1.38620 * 119.25172 * 359.70448 * 24 23 22 27 27 C 1.48184 * 118.51526 * 27.38833 * 9 7 2 28 28 H 0.97005 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.49148 * 28.88509 * 10 9 7 30 30 H 1.08997 * 109.49649 * 148.94858 * 10 9 7 31 31 H 1.08994 * 109.43883 * 50.16710 * 11 10 9 32 32 H 1.09000 * 109.42998 * 170.03290 * 11 10 9 33 33 H 1.08992 * 108.64646 * 181.88545 * 12 11 10 34 34 H 1.08998 * 108.64396 * 299.86879 * 12 11 10 35 35 H 1.08999 * 109.46445 * 185.00105 * 16 14 13 36 36 H 1.09001 * 109.46953 * 304.99958 * 16 14 13 37 37 H 0.96995 * 120.00539 * 359.97438 * 17 16 14 38 38 H 1.08006 * 119.69446 * 359.95397 * 21 20 18 39 39 H 1.08005 * 119.48023 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.86754 * 180.27533 * 26 24 23 41 41 H 1.08995 * 109.23060 * 259.08713 * 27 9 7 42 42 H 1.08997 * 109.23015 * 18.46277 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5980 1.9885 1.3953 5 1 3.4941 1.4710 -0.7978 6 1 1.4013 2.6795 -0.5975 7 6 2.0102 -1.2022 0.0005 8 1 1.5171 -2.1105 -0.3128 9 7 3.3200 -1.2364 0.3983 10 6 4.1791 -2.2633 -0.1447 11 6 4.1456 -3.5028 0.7832 12 6 4.8357 -3.1934 2.0517 13 8 4.2400 -2.1229 2.7808 14 6 4.7263 -0.8560 2.4158 15 1 5.7265 -0.9595 1.9953 16 6 4.7872 0.0411 3.6537 17 7 5.7709 -0.4952 4.5975 18 6 5.9959 0.1354 5.7671 19 8 5.3830 1.1494 6.0388 20 6 6.9883 -0.4061 6.7200 21 6 7.6988 -1.5690 6.4196 22 7 8.5832 -2.0523 7.2667 23 6 8.8347 -1.4668 8.4219 24 6 8.1722 -0.3088 8.7952 25 9 8.4400 0.2794 9.9816 26 6 7.2355 0.2429 7.9350 27 6 3.7938 -0.2148 1.3615 28 1 -0.4850 0.8401 0.0004 29 1 3.8285 -2.5429 -1.1381 30 1 5.1994 -1.8860 -0.2118 31 1 3.1102 -3.7732 0.9902 32 1 4.6463 -4.3371 0.2920 33 1 4.8317 -4.0858 2.6774 34 1 5.8696 -2.9286 1.8303 35 1 5.0792 1.0488 3.3579 36 1 3.8067 0.0716 4.1288 37 1 6.2603 -1.3041 4.3806 38 1 7.5213 -2.0777 5.4835 39 1 9.5688 -1.8970 9.0872 40 1 6.7070 1.1473 8.1977 41 1 4.3358 0.5624 0.8229 42 1 2.9351 0.2299 1.8644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073568473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -50.609226 kcal Electronic energy + Delta-G solvation = -27296.008585 eV Core-core repulsion = 23192.126105 eV Total energy + Delta-G solvation = -4103.882479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.46513 -40.97689 -39.56725 -38.82672 -35.50821 -34.99446 -33.15360 -32.79979 -31.79234 -31.30965 -29.11349 -26.45543 -25.79822 -24.51912 -24.11525 -22.57093 -21.39246 -20.95365 -20.09464 -18.75291 -17.88537 -17.43065 -17.23107 -16.62717 -16.42584 -16.31975 -15.96871 -15.45490 -15.18208 -14.98583 -14.48832 -14.36243 -13.98153 -13.87531 -13.70347 -13.54516 -13.36760 -12.92911 -12.80895 -12.63237 -12.42264 -12.07842 -11.78984 -11.22708 -11.03330 -10.78328 -10.47553 -10.43856 -10.33584 -10.14694 -9.99424 -9.94857 -9.59618 -9.59307 -9.22882 -9.05271 -8.62584 -6.99806 -5.96894 -3.35315 0.00284 0.45872 2.44523 2.75733 3.26051 3.28609 3.44000 3.46216 3.47593 3.74828 3.98844 4.15932 4.20035 4.28105 4.49261 4.59248 4.67180 4.98463 5.12859 5.20247 5.23983 5.31099 5.33447 5.38825 5.42388 5.64811 5.67824 5.73586 5.92353 5.94555 5.98060 6.14566 6.19721 6.25329 6.37446 6.56715 6.60335 6.85361 7.14077 7.21978 7.66199 7.90418 7.97478 8.32939 8.94062 9.70184 9.99543 11.19191 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.003019 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.977599 B = 9273.201962 C =10314.690741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.026 3.974 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.303 1.303 7 C -0.265 4.265 8 H 0.085 0.915 9 N -0.595 5.595 10 C 0.157 3.843 11 C -0.183 4.183 12 C 0.075 3.925 13 O -0.354 6.354 14 C 0.067 3.933 15 H 0.057 0.943 16 C 0.119 3.881 17 N -0.711 5.711 18 C 0.559 3.441 19 O -0.528 6.528 20 C -0.151 4.151 21 C 0.125 3.875 22 N -0.457 5.457 23 C 0.095 3.905 24 C 0.044 3.956 25 F -0.125 7.125 26 C -0.052 4.052 27 C 0.107 3.893 28 H 0.263 0.737 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.400 0.600 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.032 0.968 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.450 -4.215 13.178 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.231 1.231 7 C -0.394 4.394 8 H 0.102 0.898 9 N -0.317 5.317 10 C 0.030 3.970 11 C -0.223 4.223 12 C -0.001 4.001 13 O -0.272 6.272 14 C 0.006 3.994 15 H 0.075 0.925 16 C -0.004 4.004 17 N -0.362 5.362 18 C 0.344 3.656 19 O -0.405 6.405 20 C -0.156 4.156 21 C -0.034 4.034 22 N -0.164 5.164 23 C -0.063 4.063 24 C 0.023 3.977 25 F -0.103 7.103 26 C -0.079 4.079 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.235 0.765 38 H 0.185 0.815 39 H 0.191 0.809 40 H 0.180 0.820 41 H 0.049 0.951 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.157 -4.155 13.284 23.680 hybrid contribution 0.338 1.422 0.128 1.467 sum 19.495 -2.732 13.412 23.820 Atomic orbital electron populations 1.69837 1.05768 1.26622 1.52619 1.25305 0.95203 0.97583 0.99253 0.87078 0.79370 0.84635 0.77540 1.21121 1.20128 1.23136 1.18907 0.85178 0.94628 1.40656 0.89775 1.43876 1.08985 1.32471 1.46362 1.20741 0.92915 0.87927 0.95447 1.22247 1.02562 1.00213 0.97287 1.21394 0.94689 0.89939 0.94082 1.87490 1.66499 1.13328 1.59875 1.22875 0.97391 0.85377 0.93722 0.92498 1.21705 0.93021 0.96982 0.88719 1.45831 1.42541 1.29437 1.18362 1.17872 0.82252 0.84026 0.81416 1.90829 1.49346 1.24277 1.76043 1.20967 1.00333 0.97995 0.96330 1.23113 0.90129 0.91658 0.98495 1.67773 1.15414 1.30869 1.02386 1.23166 0.97902 0.91060 0.94185 1.18674 0.99695 0.95496 0.83881 1.91566 1.92714 1.83192 1.42858 1.21820 0.94482 1.00061 0.91576 1.22461 0.97733 0.91759 0.89983 0.92699 0.92122 0.95048 0.90547 0.91871 0.90933 0.94536 0.89782 0.89601 0.76467 0.81493 0.80919 0.82047 0.95066 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.65 13.97 55.49 0.78 -26.88 16 2 C 0.03 0.73 5.17 -17.43 -0.09 0.64 16 3 Si 0.88 21.95 23.97 -169.99 -4.07 17.87 16 4 H -0.28 -6.71 6.36 56.52 0.36 -6.35 16 5 H -0.28 -6.67 6.81 56.52 0.39 -6.29 16 6 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 7 C -0.27 -7.24 9.86 -15.06 -0.15 -7.39 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 9 N -0.60 -13.48 2.36 -171.25 -0.40 -13.88 16 10 C 0.16 2.88 5.68 -4.13 -0.02 2.86 16 11 C -0.18 -2.85 6.03 -28.31 -0.17 -3.02 16 12 C 0.08 1.04 6.05 34.59 0.21 1.25 16 13 O -0.35 -5.91 9.78 -34.10 -0.33 -6.24 16 14 C 0.07 1.06 2.35 -25.86 -0.06 1.00 16 15 H 0.06 0.76 7.20 -51.93 -0.37 0.39 16 16 C 0.12 1.75 5.24 -4.04 -0.02 1.73 16 17 N -0.71 -8.31 5.45 -61.25 -0.33 -8.64 16 18 C 0.56 7.10 7.78 -12.33 -0.10 7.01 16 19 O -0.53 -8.68 16.42 5.32 0.09 -8.60 16 20 C -0.15 -1.51 5.89 -104.83 -0.62 -2.12 16 21 C 0.12 1.04 10.71 -17.14 -0.18 0.86 16 22 N -0.46 -4.00 10.34 -12.86 -0.13 -4.13 16 23 C 0.10 0.71 11.16 -17.40 -0.19 0.52 16 24 C 0.04 0.37 7.33 -39.33 -0.29 0.08 16 25 F -0.12 -1.08 17.28 2.25 0.04 -1.04 16 26 C -0.05 -0.50 9.70 -38.80 -0.38 -0.87 16 27 C 0.11 2.20 3.79 -2.24 -0.01 2.20 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.06 1.14 7.97 -51.93 -0.41 0.72 16 30 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.42 7.27 -51.93 -0.38 0.04 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.40 3.56 6.53 -40.82 -0.27 3.30 16 38 H 0.17 0.98 6.42 -52.48 -0.34 0.65 16 39 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.16 1.53 7.73 -52.49 -0.41 1.12 16 41 H 0.03 0.65 6.01 -51.93 -0.31 0.33 16 42 H 0.08 1.92 5.06 -51.93 -0.26 1.66 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -33.37 344.02 -6.59 -39.95 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.32 Total: 1.68 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.07 Total: 4.72 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.10 Total: -53.53 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.25 Total: -14.83 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.07 Total: 17.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.37 -6.59 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073568473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.658 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds