Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47158 * 94.74027 * 3 2 1 5 5 H 1.48502 * 109.47008 * 214.73784 * 3 2 1 6 6 H 1.48500 * 109.47313 * 334.73792 * 3 2 1 7 7 C 1.38814 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 19.59746 * 7 2 1 9 9 N 1.36929 * 120.00132 * 199.59716 * 7 2 1 10 10 C 1.44470 * 118.51392 * 207.66031 * 9 7 2 11 11 C 1.54878 * 109.31949 * 268.93333 * 10 9 7 12 12 C 1.47687 * 109.68201 * 290.09595 * 11 10 9 13 13 O 1.42565 * 113.66056 * 60.80416 * 12 11 10 14 14 C 1.40528 * 113.54490 * 272.24049 * 13 12 11 15 15 H 1.08994 * 109.40094 * 335.17260 * 14 13 12 16 16 C 1.53000 * 109.40304 * 215.41198 * 14 13 12 17 17 N 1.46497 * 109.46973 * 65.00387 * 16 14 13 18 18 C 1.34775 * 119.99667 * 179.97438 * 17 16 14 19 19 O 1.21557 * 120.00361 * 359.97438 * 18 17 16 20 20 C 1.47847 * 120.00139 * 179.97438 * 18 17 16 21 21 C 1.39553 * 120.54399 * 0.02562 * 20 18 17 22 22 N 1.31657 * 120.62255 * 179.97438 * 21 20 18 23 23 C 1.31934 * 121.90907 * 359.97438 * 22 21 20 24 24 C 1.38533 * 121.04373 * 0.02562 * 23 22 21 25 25 F 1.35108 * 120.37694 * 179.97438 * 24 23 22 26 26 C 1.38620 * 119.25172 * 359.70448 * 24 23 22 27 27 C 1.48184 * 118.51526 * 27.38833 * 9 7 2 28 28 H 0.97005 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.49148 * 28.88509 * 10 9 7 30 30 H 1.08997 * 109.49649 * 148.94858 * 10 9 7 31 31 H 1.08994 * 109.43883 * 50.16710 * 11 10 9 32 32 H 1.09000 * 109.42998 * 170.03290 * 11 10 9 33 33 H 1.08992 * 108.64646 * 181.88545 * 12 11 10 34 34 H 1.08998 * 108.64396 * 299.86879 * 12 11 10 35 35 H 1.08999 * 109.46445 * 185.00105 * 16 14 13 36 36 H 1.09001 * 109.46953 * 304.99958 * 16 14 13 37 37 H 0.96995 * 120.00539 * 359.97438 * 17 16 14 38 38 H 1.08006 * 119.69446 * 359.95397 * 21 20 18 39 39 H 1.08005 * 119.48023 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.86754 * 180.27533 * 26 24 23 41 41 H 1.08995 * 109.23060 * 259.08713 * 27 9 7 42 42 H 1.08997 * 109.23015 * 18.46277 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5980 1.9885 1.3953 5 1 3.4941 1.4710 -0.7978 6 1 1.4013 2.6795 -0.5975 7 6 2.0102 -1.2022 0.0005 8 1 1.5171 -2.1105 -0.3128 9 7 3.3200 -1.2364 0.3983 10 6 4.1791 -2.2633 -0.1447 11 6 4.1456 -3.5028 0.7832 12 6 4.8357 -3.1934 2.0517 13 8 4.2400 -2.1229 2.7808 14 6 4.7263 -0.8560 2.4158 15 1 5.7265 -0.9595 1.9953 16 6 4.7872 0.0411 3.6537 17 7 5.7709 -0.4952 4.5975 18 6 5.9959 0.1354 5.7671 19 8 5.3830 1.1494 6.0388 20 6 6.9883 -0.4061 6.7200 21 6 7.6988 -1.5690 6.4196 22 7 8.5832 -2.0523 7.2667 23 6 8.8347 -1.4668 8.4219 24 6 8.1722 -0.3088 8.7952 25 9 8.4400 0.2794 9.9816 26 6 7.2355 0.2429 7.9350 27 6 3.7938 -0.2148 1.3615 28 1 -0.4850 0.8401 0.0004 29 1 3.8285 -2.5429 -1.1381 30 1 5.1994 -1.8860 -0.2118 31 1 3.1102 -3.7732 0.9902 32 1 4.6463 -4.3371 0.2920 33 1 4.8317 -4.0858 2.6774 34 1 5.8696 -2.9286 1.8303 35 1 5.0792 1.0488 3.3579 36 1 3.8067 0.0716 4.1288 37 1 6.2603 -1.3041 4.3806 38 1 7.5213 -2.0777 5.4835 39 1 9.5688 -1.8970 9.0872 40 1 6.7070 1.1473 8.1977 41 1 4.3358 0.5624 0.8229 42 1 2.9351 0.2299 1.8644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073568473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -76.090833 kcal Electronic energy + Delta-G solvation = -27297.113550 eV Core-core repulsion = 23192.126105 eV Total energy + Delta-G solvation = -4104.987445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.11177 -41.77710 -40.67877 -39.90678 -37.07333 -36.20594 -34.27160 -33.80728 -33.46855 -32.23340 -30.47731 -27.75103 -27.29546 -25.61902 -24.78940 -24.00872 -22.60254 -21.94286 -21.66178 -19.60878 -19.03689 -18.52739 -18.04923 -17.84327 -17.45738 -17.26580 -16.99716 -16.83655 -16.32192 -16.24234 -15.96185 -15.38580 -15.14089 -15.00169 -14.74424 -14.59643 -14.35470 -14.21720 -14.08118 -13.98465 -13.53796 -13.47974 -13.46676 -12.84157 -12.39160 -12.34503 -11.92391 -11.77250 -11.61910 -11.48330 -11.37451 -11.16817 -10.76681 -10.73020 -10.38710 -10.34654 -10.13438 -8.87829 -8.16262 -5.49520 -0.68129 -0.20470 1.30014 1.39545 1.48512 1.59013 1.80521 2.41634 2.53148 2.80425 2.84648 3.00879 3.12527 3.33927 3.47186 3.55651 3.60644 3.91570 3.93291 3.97688 4.07158 4.15645 4.33467 4.37133 4.46730 4.54622 4.60676 4.62449 4.69249 4.73451 4.84791 4.89792 4.92529 5.13694 5.19986 5.22519 5.33298 5.52411 5.90242 6.14096 6.31424 6.51218 6.52629 6.97703 6.98578 7.67334 7.97453 9.04073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.003019 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.977599 B = 9273.201962 C =10314.690741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.038 4.038 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.316 1.316 7 C -0.248 4.248 8 H 0.046 0.954 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.173 4.173 12 C 0.065 3.935 13 O -0.377 6.377 14 C 0.082 3.918 15 H 0.098 0.902 16 C 0.126 3.874 17 N -0.695 5.695 18 C 0.562 3.438 19 O -0.574 6.574 20 C -0.163 4.163 21 C 0.137 3.863 22 N -0.468 5.468 23 C 0.110 3.890 24 C 0.040 3.960 25 F -0.127 7.127 26 C -0.060 4.060 27 C 0.098 3.902 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.417 0.583 38 H 0.195 0.805 39 H 0.204 0.796 40 H 0.153 0.847 41 H 0.041 0.959 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.884 -5.431 14.018 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.232 4.232 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.245 1.245 7 C -0.378 4.378 8 H 0.063 0.937 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.295 6.295 14 C 0.022 3.978 15 H 0.116 0.884 16 C 0.001 3.999 17 N -0.347 5.347 18 C 0.349 3.651 19 O -0.454 6.454 20 C -0.169 4.169 21 C -0.021 4.021 22 N -0.176 5.176 23 C -0.048 4.048 24 C 0.018 3.982 25 F -0.106 7.106 26 C -0.087 4.087 27 C -0.028 4.028 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.255 0.745 38 H 0.211 0.789 39 H 0.221 0.779 40 H 0.171 0.829 41 H 0.058 0.942 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.676 -5.432 14.128 28.101 hybrid contribution -1.007 1.635 -0.113 1.923 sum 22.669 -3.797 14.015 26.921 Atomic orbital electron populations 1.69988 1.07649 1.27123 1.55963 1.25974 0.95809 1.01191 1.00269 0.86034 0.78222 0.79841 0.78342 1.19470 1.18324 1.24499 1.18836 0.87282 0.93041 1.38625 0.93669 1.44002 1.07734 1.33848 1.47515 1.21033 0.93701 0.87971 0.95310 1.22141 1.00898 0.99939 0.98289 1.21660 0.96104 0.90104 0.93195 1.87502 1.67601 1.14073 1.60329 1.22643 0.97660 0.84909 0.92602 0.88419 1.21418 0.92468 0.97223 0.88767 1.45567 1.41743 1.29836 1.17600 1.18229 0.82015 0.83297 0.81601 1.90810 1.51228 1.26410 1.76972 1.20707 1.00871 0.99239 0.96048 1.23468 0.88880 0.90546 0.99176 1.67907 1.15720 1.31052 1.02872 1.23660 0.97219 0.89984 0.93958 1.18680 0.99809 0.95953 0.83710 1.91562 1.92726 1.83347 1.42963 1.21868 0.94819 1.00022 0.91974 1.22503 0.97612 0.91850 0.90831 0.93145 0.93569 0.91418 0.94801 0.88175 0.88497 0.90438 0.89513 0.92623 0.74453 0.78866 0.77889 0.82897 0.94180 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.68 13.97 21.65 0.30 -61.37 16 2 C -0.04 -2.25 5.17 84.86 0.44 -1.81 16 3 Si 0.95 46.41 23.97 68.60 1.64 48.05 16 4 H -0.27 -12.35 6.36 99.48 0.63 -11.72 16 5 H -0.26 -11.79 6.81 99.48 0.68 -11.11 16 6 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 7 C -0.25 -13.99 9.86 84.04 0.83 -13.16 16 8 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 9 N -0.61 -27.14 2.36 -695.70 -1.64 -28.78 16 10 C 0.15 5.00 5.68 87.40 0.50 5.50 16 11 C -0.17 -4.92 6.03 29.57 0.18 -4.74 16 12 C 0.07 1.49 6.05 70.32 0.43 1.92 16 13 O -0.38 -11.49 9.78 -144.93 -1.42 -12.91 16 14 C 0.08 2.35 2.35 31.16 0.07 2.42 16 15 H 0.10 2.03 7.20 -2.39 -0.02 2.02 16 16 C 0.13 3.48 5.24 86.38 0.45 3.93 16 17 N -0.70 -14.42 5.45 -465.98 -2.54 -16.96 16 18 C 0.56 13.50 7.78 86.79 0.68 14.18 16 19 O -0.57 -18.95 16.42 -3.90 -0.06 -19.01 16 20 C -0.16 -2.93 5.89 -20.00 -0.12 -3.05 16 21 C 0.14 1.81 10.71 85.04 0.91 2.72 16 22 N -0.47 -6.45 10.34 -194.60 -2.01 -8.46 16 23 C 0.11 1.28 11.16 84.75 0.95 2.22 16 24 C 0.04 0.59 7.33 22.43 0.16 0.75 16 25 F -0.13 -1.99 17.28 44.97 0.78 -1.22 16 26 C -0.06 -1.07 9.70 22.78 0.22 -0.85 16 27 C 0.10 3.88 3.79 86.62 0.33 4.21 16 28 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 29 H 0.05 1.69 7.97 -2.39 -0.02 1.67 16 30 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.21 7.27 -2.39 -0.02 1.19 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.42 5.62 6.53 -92.71 -0.61 5.01 16 38 H 0.19 1.34 6.42 -2.91 -0.02 1.32 16 39 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.15 2.94 7.73 -2.91 -0.02 2.91 16 41 H 0.04 1.53 6.01 -2.39 -0.01 1.52 16 42 H 0.05 2.20 5.06 -2.39 -0.01 2.19 16 Total: -1.00 -78.03 344.02 1.43 -76.60 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.36 Total: 9.83 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.02 Total: 14.22 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -5.89 Total: -115.57 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.48 Total: -31.92 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.64 Total: 48.05 kcal Total: -78.03 1.43 -76.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073568473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.508 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds