Wall clock time and date at job start Tue Mar 31 2020 14:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00198 * 2 1 4 4 H 1.48500 * 109.47036 * 239.99965 * 3 2 1 5 5 H 1.48494 * 109.46752 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47071 * 119.99962 * 3 2 1 7 7 C 1.38814 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00034 * 160.61514 * 7 2 1 9 9 N 1.36937 * 119.99905 * 340.62113 * 7 2 1 10 10 C 1.43426 * 120.63367 * 155.68808 * 9 7 2 11 11 C 1.55330 * 116.23764 * 269.37652 * 10 9 7 12 12 C 1.55187 * 108.87475 * 319.46550 * 11 10 9 13 13 O 1.39648 * 110.57092 * 322.14479 * 12 11 10 14 14 C 1.42381 * 108.63250 * 101.16978 * 13 12 11 15 15 H 1.08990 * 108.61886 * 28.57029 * 14 13 12 16 16 C 1.53003 * 108.61628 * 146.34601 * 14 13 12 17 17 N 1.46508 * 109.46719 * 299.99771 * 16 14 13 18 18 C 1.34773 * 119.99702 * 180.02562 * 17 16 14 19 19 O 1.21554 * 119.99959 * 0.02562 * 18 17 16 20 20 C 1.47849 * 119.99860 * 179.97438 * 18 17 16 21 21 C 1.39551 * 120.54747 * 0.02562 * 20 18 17 22 22 N 1.31660 * 120.62341 * 179.97438 * 21 20 18 23 23 C 1.31934 * 121.90496 * 359.97438 * 22 21 20 24 24 C 1.38534 * 121.04877 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.37929 * 179.97438 * 24 23 22 26 26 C 1.38620 * 119.24993 * 359.74414 * 24 23 22 27 27 C 1.46919 * 113.78764 * 267.45150 * 14 13 12 28 28 H 0.97002 * 119.99425 * 0.02562 * 1 2 3 29 29 H 1.08997 * 108.12215 * 147.62191 * 10 9 7 30 30 H 1.08995 * 107.96429 * 31.01353 * 10 9 7 31 31 H 1.09005 * 109.56953 * 199.65181 * 11 10 9 32 32 H 1.08997 * 109.57332 * 79.28609 * 11 10 9 33 33 H 1.09002 * 109.26025 * 201.86331 * 12 11 10 34 34 H 1.09000 * 109.25866 * 82.42339 * 12 11 10 35 35 H 1.08991 * 109.47183 * 59.99296 * 16 14 13 36 36 H 1.08994 * 109.46675 * 179.97438 * 16 14 13 37 37 H 0.96996 * 120.00042 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.69188 * 359.94740 * 21 20 18 39 39 H 1.08001 * 119.47603 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.86604 * 180.25769 * 26 24 23 41 41 H 1.08999 * 109.98502 * 176.12411 * 27 14 13 42 42 H 1.08998 * 109.99236 * 297.49421 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0444 -1.2288 -0.3099 9 7 1.3838 -2.3543 0.3946 10 6 1.8498 -3.6320 -0.0607 11 6 1.2144 -4.1668 -1.3734 12 6 -0.3049 -3.8509 -1.3608 13 8 -0.8281 -4.0079 -0.0756 14 6 -0.9689 -2.7217 0.5185 15 1 -1.1328 -1.9894 -0.2719 16 6 -2.1989 -2.7359 1.4283 17 7 -3.3894 -3.0517 0.6350 18 6 -4.5970 -3.1190 1.2296 19 8 -4.6985 -2.9172 2.4240 20 6 -5.7985 -3.4372 0.4289 21 6 -5.6953 -3.6704 -0.9431 22 7 -6.7641 -3.9543 -1.6574 23 6 -7.9647 -4.0307 -1.1158 24 6 -8.1524 -3.8128 0.2394 25 9 -9.3880 -3.8940 0.7798 26 6 -7.0574 -3.5153 1.0356 27 6 0.1958 -2.3041 1.3109 28 1 -0.4849 0.8401 -0.0004 29 1 1.6639 -4.3613 0.7277 30 1 2.9274 -3.5636 -0.2089 31 1 1.3626 -5.2448 -1.4380 32 1 1.6814 -3.6804 -2.2297 33 1 -0.8186 -4.5281 -2.0432 34 1 -0.4612 -2.8235 -1.6894 35 1 -2.0685 -3.4905 2.2039 36 1 -2.3196 -1.7565 1.8913 37 1 -3.3086 -3.2116 -0.3183 38 1 -4.7295 -3.6170 -1.4236 39 1 -8.8149 -4.2660 -1.7389 40 1 -7.1731 -3.3448 2.0957 41 1 0.0514 -1.2882 1.6785 42 1 0.3415 -2.9873 2.1476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073568474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:41 Heat of formation + Delta-G solvation = -70.608216 kcal Electronic energy + Delta-G solvation = -27559.961314 eV Core-core repulsion = 23455.211613 eV Total energy + Delta-G solvation = -4104.749701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.10394 -41.75010 -40.74023 -39.86138 -36.79531 -36.10866 -34.01362 -33.69555 -33.07779 -32.04284 -30.23547 -27.52555 -27.04679 -25.61648 -24.78639 -24.08226 -22.43462 -21.81418 -21.28178 -19.55960 -18.91709 -18.50555 -18.03601 -17.68413 -17.34155 -16.99915 -16.88663 -16.57445 -16.32282 -16.02682 -15.74390 -15.50520 -14.99409 -14.85988 -14.63568 -14.53716 -14.31309 -14.17193 -13.87077 -13.62560 -13.43536 -13.26453 -12.94769 -12.60420 -12.50542 -12.30036 -11.91390 -11.80340 -11.60546 -11.35887 -11.16682 -11.15569 -10.74444 -10.54046 -10.31044 -10.25422 -10.08002 -8.70313 -7.88677 -5.28480 -0.66366 -0.20038 1.49258 1.53341 1.57831 1.63282 1.93571 2.53380 2.54434 2.83178 3.10061 3.15500 3.28898 3.47696 3.53898 3.56630 3.62974 3.95097 4.13184 4.28639 4.36661 4.41203 4.43057 4.57643 4.63457 4.74171 4.75992 4.77934 4.82261 4.94948 5.09542 5.20512 5.21383 5.30316 5.34810 5.37449 5.43202 5.51360 5.69870 6.36227 6.39995 6.52908 6.53556 7.02104 7.12765 7.84839 8.37330 9.17143 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.003061 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.249407 B = 9143.704333 C = 9719.797194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.034 4.034 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.264 4.264 8 H 0.062 0.938 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.066 3.934 13 O -0.366 6.366 14 C 0.079 3.921 15 H 0.087 0.913 16 C 0.132 3.868 17 N -0.696 5.696 18 C 0.560 3.440 19 O -0.574 6.574 20 C -0.163 4.163 21 C 0.133 3.867 22 N -0.469 5.469 23 C 0.109 3.891 24 C 0.043 3.957 25 F -0.125 7.125 26 C -0.058 4.058 27 C 0.144 3.856 28 H 0.251 0.749 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.185 0.815 39 H 0.206 0.794 40 H 0.157 0.843 41 H 0.079 0.921 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -8.902 -3.788 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.230 4.230 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.394 4.394 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.011 4.011 13 O -0.285 6.285 14 C 0.020 3.980 15 H 0.105 0.895 16 C 0.007 3.993 17 N -0.346 5.346 18 C 0.346 3.654 19 O -0.455 6.455 20 C -0.168 4.168 21 C -0.025 4.025 22 N -0.176 5.176 23 C -0.050 4.050 24 C 0.021 3.979 25 F -0.104 7.104 26 C -0.085 4.085 27 C 0.019 3.981 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.248 0.752 38 H 0.201 0.799 39 H 0.223 0.777 40 H 0.175 0.825 41 H 0.097 0.903 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.530 -8.941 -3.722 16.639 hybrid contribution 0.527 1.435 0.676 1.672 sum -13.003 -7.506 -3.046 15.320 Atomic orbital electron populations 1.69965 1.05713 1.25764 1.54662 1.25421 0.96045 1.00331 1.01212 0.85516 0.77785 0.80296 0.77786 1.20779 1.22020 1.21350 1.19353 0.93695 0.86406 1.39940 0.92049 1.44223 1.34657 1.01863 1.51563 1.20500 0.95965 0.86726 0.94266 1.23491 0.96802 1.00582 0.99730 1.22428 0.93765 1.00369 0.84567 1.87522 1.83338 1.28125 1.29507 1.21771 0.93433 0.84850 0.97991 0.89502 1.21480 0.83141 1.00612 0.94055 1.45697 1.06088 1.69698 1.13101 1.18224 0.83424 0.76912 0.86791 1.90767 1.86578 1.51845 1.16343 1.20738 0.93620 1.06671 0.95748 1.23362 0.98912 0.91206 0.88973 1.67894 0.98647 1.12576 1.38517 1.23682 0.96881 0.93466 0.90931 1.18636 0.80467 1.05203 0.93585 1.91560 1.38703 1.93830 1.86282 1.21855 0.90418 0.93936 1.02262 1.20674 0.86213 1.00172 0.91039 0.93933 0.94651 0.95257 0.90395 0.92825 0.89289 0.94284 0.91699 0.91396 0.75159 0.79864 0.77702 0.82539 0.90288 0.95682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.88 9.57 21.65 0.21 -46.68 16 2 C -0.03 -1.71 4.92 84.86 0.42 -1.29 16 3 Si 0.96 42.34 29.60 68.60 2.03 44.37 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.26 -13.51 9.61 84.03 0.81 -12.71 16 8 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 9 N -0.60 -28.02 2.61 -706.00 -1.84 -29.87 16 10 C 0.15 6.14 5.33 87.75 0.47 6.60 16 11 C -0.17 -5.57 6.75 32.14 0.22 -5.35 16 12 C 0.07 2.20 6.38 72.73 0.46 2.66 16 13 O -0.37 -12.87 9.54 -137.27 -1.31 -14.18 16 14 C 0.08 3.00 1.95 28.71 0.06 3.05 16 15 H 0.09 3.76 5.24 -2.39 -0.01 3.75 16 16 C 0.13 4.55 5.24 86.38 0.45 5.01 16 17 N -0.70 -20.07 5.39 -465.97 -2.51 -22.58 16 18 C 0.56 16.60 7.78 86.79 0.68 17.27 16 19 O -0.57 -21.15 16.42 -3.89 -0.06 -21.21 16 20 C -0.16 -3.76 5.89 -20.00 -0.12 -3.87 16 21 C 0.13 2.59 10.71 85.04 0.91 3.50 16 22 N -0.47 -8.78 10.34 -194.61 -2.01 -10.79 16 23 C 0.11 1.65 11.16 84.75 0.95 2.60 16 24 C 0.04 0.75 7.33 22.43 0.16 0.92 16 25 F -0.13 -2.22 17.28 44.97 0.78 -1.44 16 26 C -0.06 -1.23 9.70 22.78 0.22 -1.01 16 27 C 0.14 6.31 4.71 83.79 0.39 6.71 16 28 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 29 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.03 1.17 7.95 -2.39 -0.02 1.15 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.51 6.66 -2.39 -0.02 1.49 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.41 10.01 6.39 -92.71 -0.59 9.42 16 38 H 0.18 2.85 6.42 -2.91 -0.02 2.83 16 39 H 0.21 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.16 3.40 7.73 -2.91 -0.02 3.38 16 41 H 0.08 3.88 6.03 -2.39 -0.01 3.87 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -59.94 347.03 1.82 -58.11 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.47 Total: 20.17 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.08 Total: 24.09 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -6.16 Total: -109.91 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.37 Total: -35.39 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.94 1.82 -58.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073568474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.494 kcal (2) G-P(sol) polarization free energy of solvation -59.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds