Wall clock time and date at job start Tue Mar 31 2020 14:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47014 * 90.00034 * 3 2 1 5 5 H 1.48503 * 109.47203 * 209.99933 * 3 2 1 6 6 H 1.48497 * 109.46972 * 329.99611 * 3 2 1 7 7 C 1.38814 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 196.65790 * 7 2 1 9 9 N 1.36932 * 119.99858 * 16.66131 * 7 2 1 10 10 C 1.47499 * 118.76194 * 26.39169 * 9 7 2 11 11 C 1.53949 * 110.82317 * 138.25223 * 10 9 7 12 12 C 1.51537 * 109.72755 * 320.31040 * 11 10 9 13 13 O 1.42157 * 108.76552 * 91.29255 * 12 11 10 14 14 C 1.38016 * 119.43350 * 272.78716 * 13 12 11 15 15 H 1.09005 * 109.46410 * 303.41762 * 14 13 12 16 16 C 1.52999 * 109.46599 * 183.43096 * 14 13 12 17 17 N 1.46507 * 109.47202 * 64.98326 * 16 14 13 18 18 C 1.34780 * 119.99731 * 179.97438 * 17 16 14 19 19 O 1.21528 * 120.00172 * 0.02562 * 18 17 16 20 20 C 1.48048 * 119.99440 * 179.97438 * 18 17 16 21 21 C 1.39390 * 119.68757 * 179.72819 * 20 18 17 22 22 C 1.38474 * 119.08880 * 179.77337 * 21 20 18 23 23 C 1.38898 * 118.46890 * 0.49017 * 22 21 20 24 24 F 1.35102 * 120.35137 * 179.72524 * 23 22 21 25 25 C 1.38881 * 119.29974 * 359.75160 * 23 22 21 26 26 N 1.31452 * 120.85404 * 0.02562 * 25 23 22 27 27 C 1.45126 * 118.75419 * 206.66111 * 9 7 2 28 28 H 0.96995 * 120.00444 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.17529 * 258.77713 * 10 9 7 30 30 H 1.09007 * 109.16444 * 17.97408 * 10 9 7 31 31 H 1.08996 * 109.46056 * 200.18150 * 11 10 9 32 32 H 1.09000 * 109.29615 * 80.33895 * 11 10 9 33 33 H 1.09003 * 109.58550 * 331.50860 * 12 11 10 34 34 H 1.09000 * 109.58890 * 211.07311 * 12 11 10 35 35 H 1.09005 * 109.47357 * 184.98089 * 16 14 13 36 36 H 1.09004 * 109.47225 * 304.98491 * 16 14 13 37 37 H 0.96992 * 119.99923 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.45575 * 359.97438 * 21 20 18 39 39 H 1.07996 * 120.75991 * 180.23996 * 22 21 20 40 40 H 1.07993 * 119.56808 * 180.02562 * 25 23 22 41 41 H 1.09005 * 109.46042 * 29.31210 * 27 9 7 42 42 H 1.08999 * 109.46280 * 149.27331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0562 -1.2216 0.2687 9 7 1.3687 -2.3633 -0.3390 10 6 0.1969 -2.2917 -1.2319 11 6 0.2307 -3.4269 -2.2712 12 6 1.6511 -3.6332 -2.7574 13 8 2.2770 -4.6123 -1.9386 14 6 2.9061 -4.2210 -0.7741 15 1 3.6643 -3.4726 -1.0047 16 6 3.5700 -5.4348 -0.1206 17 7 4.6384 -5.9341 -0.9899 18 6 5.3664 -7.0049 -0.6159 19 8 5.1362 -7.5565 0.4423 20 6 6.4456 -7.5097 -1.4946 21 6 7.1983 -8.6142 -1.0988 22 6 8.2015 -9.0789 -1.9325 23 6 8.4258 -8.4156 -3.1321 24 9 9.3985 -8.8332 -3.9716 25 6 7.6399 -7.3183 -3.4592 26 7 6.6915 -6.9028 -2.6493 27 6 1.8639 -3.6172 0.1982 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7124 -2.3737 -0.6365 30 1 0.1993 -1.3323 -1.7494 31 1 -0.4075 -3.1656 -3.1152 32 1 -0.1331 -4.3463 -1.8124 33 1 2.2006 -2.6943 -2.6892 34 1 1.6370 -3.9767 -3.7917 35 1 3.9908 -5.1443 0.8420 36 1 2.8273 -6.2185 0.0290 37 1 4.8223 -5.4936 -1.8343 38 1 6.9995 -9.1028 -0.1564 39 1 8.7985 -9.9348 -1.6544 40 1 7.8102 -6.7996 -4.3910 41 1 2.3315 -3.4381 1.1664 42 1 1.0340 -4.3135 0.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073582846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:45 Heat of formation + Delta-G solvation = -60.681814 kcal Electronic energy + Delta-G solvation = -26969.466539 eV Core-core repulsion = 22865.147280 eV Total energy + Delta-G solvation = -4104.319260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.49424 -40.85252 -39.30743 -38.57221 -35.29961 -34.71344 -33.07836 -32.18731 -31.56984 -31.32257 -28.57343 -25.91257 -25.41088 -24.62523 -24.11463 -22.64708 -20.95819 -20.71620 -19.58606 -18.50501 -17.93109 -17.71383 -16.97759 -16.34703 -16.14878 -15.85099 -15.60580 -15.21494 -15.02412 -14.83168 -14.43311 -14.26677 -13.95990 -13.74126 -13.62367 -13.38154 -12.98983 -12.92050 -12.68841 -12.24913 -12.10073 -11.40789 -11.22279 -10.97398 -10.89451 -10.65906 -10.51572 -10.48094 -10.26782 -9.96641 -9.87933 -9.75891 -9.69334 -9.48172 -8.96096 -8.82342 -8.44326 -6.76868 -5.86052 -3.30522 0.08529 0.59538 2.44450 3.01042 3.32637 3.40237 3.41925 3.44243 3.46444 3.79806 4.15993 4.21298 4.28495 4.42589 4.48378 4.88256 5.17304 5.20966 5.32757 5.35410 5.39853 5.53522 5.60871 5.69965 5.85829 5.97094 6.01169 6.04321 6.16015 6.25229 6.34038 6.47319 6.55736 6.70445 6.73235 6.81412 7.11980 7.32648 7.57058 7.60890 7.75303 8.12674 8.21943 8.37644 9.15207 9.80167 10.26589 11.21592 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002609 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.666937 B =10731.281696 C =10992.114509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.176 4.176 12 C 0.089 3.911 13 O -0.395 6.395 14 C 0.067 3.933 15 H 0.053 0.947 16 C 0.129 3.871 17 N -0.695 5.695 18 C 0.567 3.433 19 O -0.537 6.537 20 C 0.074 3.926 21 C -0.083 4.083 22 C -0.116 4.116 23 C 0.066 3.934 24 F -0.125 7.125 25 C 0.077 3.923 26 N -0.428 5.428 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.414 0.586 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.176 0.824 41 H 0.056 0.944 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 -15.939 -7.083 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.013 3.987 13 O -0.314 6.314 14 C 0.005 3.995 15 H 0.071 0.929 16 C 0.006 3.994 17 N -0.345 5.345 18 C 0.351 3.649 19 O -0.414 6.414 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.142 4.142 23 C 0.044 3.956 24 F -0.104 7.104 25 C -0.084 4.084 26 N -0.139 5.139 27 C -0.001 4.001 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.193 0.807 41 H 0.074 0.926 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.615 -15.601 -6.588 21.117 hybrid contribution 1.170 0.660 -0.334 1.384 sum 13.785 -14.941 -6.922 21.475 Atomic orbital electron populations 1.70070 1.05287 1.25628 1.53490 1.25041 0.95243 0.98453 1.00406 0.86334 0.79193 0.83652 0.77812 1.21299 1.20443 1.21523 1.19192 0.92745 0.85022 1.42662 0.91619 1.43833 1.33371 1.01489 1.52524 1.21057 0.88827 0.95459 0.89438 1.22828 0.97063 1.01289 1.00387 1.22004 0.92950 0.92114 0.91674 1.86077 1.72590 1.37903 1.34879 1.22627 0.95407 0.93783 0.87731 0.92919 1.21550 0.88399 0.96325 0.93131 1.45868 1.34106 1.30073 1.24427 1.17705 0.81233 0.80918 0.85082 1.90799 1.69012 1.58459 1.23173 1.21383 0.97554 0.94772 0.92750 1.22085 0.92713 0.94902 1.00694 1.21699 0.98851 1.00953 0.92731 1.19086 0.89609 0.96813 0.90067 1.91553 1.59765 1.89328 1.69753 1.22976 0.91498 0.93799 1.00152 1.67641 1.15200 1.28328 1.02715 1.21407 0.95027 0.88953 0.94735 0.93547 0.95371 0.90841 0.92124 0.92378 0.92015 0.91208 0.89831 0.90573 0.74981 0.82225 0.82718 0.80745 0.92579 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.10 55.49 0.62 -24.85 16 2 C 0.01 0.21 4.85 -17.43 -0.08 0.12 16 3 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.27 -7.01 9.45 -15.06 -0.14 -7.15 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.14 2.21 -171.80 -0.38 -14.52 16 10 C 0.18 4.10 4.75 -3.00 -0.01 4.09 16 11 C -0.18 -3.27 5.79 -26.98 -0.16 -3.43 16 12 C 0.09 1.55 6.38 36.42 0.23 1.78 16 13 O -0.40 -6.97 9.38 -26.54 -0.25 -7.22 16 14 C 0.07 1.15 2.68 -25.79 -0.07 1.09 16 15 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.13 1.96 5.34 -4.04 -0.02 1.94 16 17 N -0.69 -9.77 5.48 -61.18 -0.34 -10.11 16 18 C 0.57 7.98 7.81 -12.24 -0.10 7.88 16 19 O -0.54 -8.80 16.32 5.34 0.09 -8.71 16 20 C 0.07 0.85 6.75 -83.02 -0.56 0.29 16 21 C -0.08 -0.75 9.63 -39.07 -0.38 -1.13 16 22 C -0.12 -0.83 10.15 -39.25 -0.40 -1.23 16 23 C 0.07 0.52 7.36 -39.10 -0.29 0.23 16 24 F -0.13 -0.99 17.28 2.25 0.04 -0.95 16 25 C 0.08 0.65 11.17 -17.48 -0.20 0.46 16 26 N -0.43 -4.65 9.53 -9.74 -0.09 -4.74 16 27 C 0.13 2.59 5.12 -3.83 -0.02 2.57 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 30 H 0.07 1.88 6.43 -51.92 -0.33 1.54 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 33 H 0.06 1.20 7.41 -51.93 -0.38 0.82 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.41 5.58 7.78 -40.82 -0.32 5.27 16 38 H 0.16 1.30 7.64 -52.49 -0.40 0.90 16 39 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 42 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -30.39 353.84 -7.82 -38.20 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.61 Total: 3.95 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.19 Total: 7.52 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.19 Total: -54.22 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.16 Total: -15.93 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.39 -7.82 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073582846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.479 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds